Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Vwa7-201ENSMUST00000007245 4313 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
Usp40Q8BWR4 Gm45041-201ENSMUST00000207366 3108 ntBASIC14.57□□□□□ -0.08
Usp40Q8BWR4 Sdc1-201ENSMUST00000020911 3157 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Usp40Q8BWR4 Ncdn-201ENSMUST00000030637 3681 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Usp40Q8BWR4 E2f8-201ENSMUST00000058745 3691 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Usp40Q8BWR4 Atp8a1-202ENSMUST00000072971 7154 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Usp40Q8BWR4 Gm42849-201ENSMUST00000202834 1584 ntTSL 5 BASIC14.56□□□□□ -0.08
Usp40Q8BWR4 Hmbox1-202ENSMUST00000067843 2931 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
Usp40Q8BWR4 Mkrn1-204ENSMUST00000114823 2992 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
Usp40Q8BWR4 Ldb2-204ENSMUST00000199256 2596 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Usp40Q8BWR4 Sp6-201ENSMUST00000047997 3546 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Usp40Q8BWR4 Adcy9-201ENSMUST00000005719 4457 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
Usp40Q8BWR4 Nrros-202ENSMUST00000115163 3559 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
Usp40Q8BWR4 Prl8a1-202ENSMUST00000095926 1682 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Usp40Q8BWR4 Egfem1-202ENSMUST00000119598 2687 ntAPPRIS P4 TSL 1 (best) BASIC14.56□□□□□ -0.08
Usp40Q8BWR4 Plcd4-204ENSMUST00000113747 2720 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
Usp40Q8BWR4 Gm15032-201ENSMUST00000118547 411 ntBASIC14.56□□□□□ -0.08
Usp40Q8BWR4 Gm15815-201ENSMUST00000120569 255 ntBASIC14.56□□□□□ -0.08
Usp40Q8BWR4 Gm11701-201ENSMUST00000121277 1142 ntBASIC14.56□□□□□ -0.08
Usp40Q8BWR4 Junos-202ENSMUST00000125438 559 ntTSL 2 BASIC14.56□□□□□ -0.08
Usp40Q8BWR4 Gm15015-201ENSMUST00000135491 636 ntTSL 3 BASIC14.56□□□□□ -0.08
Usp40Q8BWR4 Gm15020-201ENSMUST00000147142 636 ntTSL 3 BASIC14.56□□□□□ -0.08
Usp40Q8BWR4 Gm14341-201ENSMUST00000154616 667 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Usp40Q8BWR4 Gm26174-201ENSMUST00000158415 219 ntBASIC14.56□□□□□ -0.08
Usp40Q8BWR4 Gm8226-201ENSMUST00000190511 798 ntBASIC14.56□□□□□ -0.08
Usp40Q8BWR4 Gm42511-201ENSMUST00000196160 234 ntBASIC14.56□□□□□ -0.08
Usp40Q8BWR4 AC122824.1-201ENSMUST00000221705 828 ntTSL 3 BASIC14.56□□□□□ -0.08
Usp40Q8BWR4 AC163638.2-201ENSMUST00000224920 827 ntBASIC14.56□□□□□ -0.08
Usp40Q8BWR4 AC154477.1-201ENSMUST00000226515 773 ntBASIC14.56□□□□□ -0.08
Usp40Q8BWR4 AC137842.2-201ENSMUST00000227734 797 ntBASIC14.56□□□□□ -0.08
Usp40Q8BWR4 Sun5-201ENSMUST00000028982 1157 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Usp40Q8BWR4 Pebp1-201ENSMUST00000036951 1240 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Usp40Q8BWR4 Ankrd45-201ENSMUST00000052245 849 ntAPPRIS P2 TSL 5 BASIC14.56□□□□□ -0.08
Usp40Q8BWR4 Tceanc2-203ENSMUST00000058585 766 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
Usp40Q8BWR4 Gm9701-201ENSMUST00000077976 427 ntBASIC14.56□□□□□ -0.08
Usp40Q8BWR4 Ccdc30-203ENSMUST00000084307 989 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Usp40Q8BWR4 Vmn1r212-201ENSMUST00000095960 1164 ntAPPRIS P1 BASIC14.56□□□□□ -0.08
Usp40Q8BWR4 Gm5148-202ENSMUST00000099128 1098 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Usp40Q8BWR4 Trim9-202ENSMUST00000110522 4405 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Usp40Q8BWR4 Nxpe5-203ENSMUST00000159964 3585 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
Usp40Q8BWR4 Ldb3-202ENSMUST00000022328 2468 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
Usp40Q8BWR4 S1pr2-201ENSMUST00000054197 6394 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Usp40Q8BWR4 Slc10a4-202ENSMUST00000201304 1419 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
Usp40Q8BWR4 Fkbp6-201ENSMUST00000044972 1447 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
Usp40Q8BWR4 Mei4-203ENSMUST00000189832 2578 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
Usp40Q8BWR4 Galntl5-202ENSMUST00000114965 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
Usp40Q8BWR4 Chmp3-201ENSMUST00000059462 2654 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Usp40Q8BWR4 Fam120b-201ENSMUST00000055352 4518 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Usp40Q8BWR4 Src-204ENSMUST00000109531 3586 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
Usp40Q8BWR4 Cd40-201ENSMUST00000017799 2986 ntAPPRIS P4 TSL 1 (best) BASIC14.55□□□□□ -0.08
Usp40Q8BWR4 Gm5475-202ENSMUST00000148928 2320 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
Usp40Q8BWR4 Lig1-211ENSMUST00000177588 3174 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
Usp40Q8BWR4 Gm37031-201ENSMUST00000195487 2530 ntBASIC14.55□□□□□ -0.08
Usp40Q8BWR4 Fn1-201ENSMUST00000055226 8315 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
Usp40Q8BWR4 Hk2-201ENSMUST00000000642 5513 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Usp40Q8BWR4 Pbrm1-207ENSMUST00000112095 7907 ntTSL 5 BASIC14.55□□□□□ -0.08
Usp40Q8BWR4 Slc38a5-202ENSMUST00000115590 1983 ntAPPRIS ALT2 TSL 2 BASIC14.55□□□□□ -0.08
Usp40Q8BWR4 Nr1h4-201ENSMUST00000058126 1964 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
Usp40Q8BWR4 Igfbp5-201ENSMUST00000027377 6006 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Usp40Q8BWR4 Zfp109-202ENSMUST00000206362 2932 ntAPPRIS P2 TSL 1 (best) BASIC14.55□□□□□ -0.08
Usp40Q8BWR4 Ncan-201ENSMUST00000002412 7195 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Usp40Q8BWR4 Polr2j-203ENSMUST00000111129 474 ntTSL 3 BASIC14.55□□□□□ -0.08
Usp40Q8BWR4 Acox3-203ENSMUST00000114237 2956 ntAPPRIS P2 TSL 1 (best) BASIC14.55□□□□□ -0.08
Usp40Q8BWR4 6430531B16Rik-202ENSMUST00000121412 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
Usp40Q8BWR4 Gm12246-201ENSMUST00000129126 503 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Usp40Q8BWR4 Gm16305-201ENSMUST00000140747 556 ntBASIC14.55□□□□□ -0.08
Usp40Q8BWR4 Gm3298-202ENSMUST00000172110 615 ntTSL 5 BASIC14.55□□□□□ -0.08
Usp40Q8BWR4 Gm26750-201ENSMUST00000181718 711 ntTSL 5 BASIC14.55□□□□□ -0.08
Usp40Q8BWR4 Vmn1r206-201ENSMUST00000187140 1135 ntAPPRIS P1 BASIC14.55□□□□□ -0.08
Usp40Q8BWR4 Marc1-203ENSMUST00000189492 1239 ntTSL 5 BASIC14.55□□□□□ -0.08
Usp40Q8BWR4 Gm6069-201ENSMUST00000196501 463 ntBASIC14.55□□□□□ -0.08
Usp40Q8BWR4 Gm42208-201ENSMUST00000198215 670 ntTSL 3 BASIC14.55□□□□□ -0.08
Usp40Q8BWR4 Gm33570-201ENSMUST00000207608 1254 ntTSL 5 BASIC14.55□□□□□ -0.08
Usp40Q8BWR4 Gm34868-201ENSMUST00000218341 530 ntTSL 3 BASIC14.55□□□□□ -0.08
Usp40Q8BWR4 AC118639.1-202ENSMUST00000226957 653 ntBASIC14.55□□□□□ -0.08
Usp40Q8BWR4 Srp19-201ENSMUST00000072576 876 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Usp40Q8BWR4 Ly6e-202ENSMUST00000169343 2154 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
Usp40Q8BWR4 Gm38048-201ENSMUST00000193778 2174 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
Usp40Q8BWR4 Slc1a4-202ENSMUST00000109594 3926 ntAPPRIS P2 TSL 1 (best) BASIC14.55□□□□□ -0.08
Usp40Q8BWR4 A930003O13Rik-202ENSMUST00000197486 3098 ntBASIC14.55□□□□□ -0.08
Usp40Q8BWR4 Dmbt1-206ENSMUST00000213064 5779 ntTSL 5 BASIC14.55□□□□□ -0.08
Usp40Q8BWR4 Ugt1a8-201ENSMUST00000113139 2227 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
Usp40Q8BWR4 Inf2-201ENSMUST00000101029 4001 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Usp40Q8BWR4 C030014I23Rik-204ENSMUST00000217463 1370 ntTSL 5 BASIC14.55□□□□□ -0.08
Usp40Q8BWR4 Cfap74-204ENSMUST00000123952 2365 ntAPPRIS P2 TSL 1 (best) BASIC14.55□□□□□ -0.08
Usp40Q8BWR4 Arhgap31-201ENSMUST00000023487 7964 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Usp40Q8BWR4 Exoc3l4-201ENSMUST00000072646 2778 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
Usp40Q8BWR4 U2af1l4-237ENSMUST00000167042 3007 ntAPPRIS P5 TSL 2 BASIC14.55□□□□□ -0.08
Usp40Q8BWR4 Gtf2ird1-207ENSMUST00000111245 3299 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Usp40Q8BWR4 Qsox1-201ENSMUST00000035325 3348 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
Usp40Q8BWR4 Miga2-201ENSMUST00000077977 3381 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Usp40Q8BWR4 Cd163l1-201ENSMUST00000084460 3454 ntAPPRIS P2 TSL 5 BASIC14.54□□□□□ -0.08
Usp40Q8BWR4 Txndc16-203ENSMUST00000123879 4069 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Usp40Q8BWR4 2900026A02Rik-203ENSMUST00000212276 5864 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
Usp40Q8BWR4 Fermt3-201ENSMUST00000040772 2587 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Usp40Q8BWR4 Sez6l-206ENSMUST00000212758 2664 ntTSL 5 BASIC14.54□□□□□ -0.08
Usp40Q8BWR4 Dcun1d2-201ENSMUST00000045366 2748 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Usp40Q8BWR4 Nhlrc3-201ENSMUST00000056749 5047 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Usp40Q8BWR4 Pcdhb9-201ENSMUST00000057228 3055 ntAPPRIS P1 BASIC14.54□□□□□ -0.08
Usp40Q8BWR4 Fn1-216ENSMUST00000189821 7410 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Retrieved 100 of 76,532 protein–RNA pairs in 80.9 ms