Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 AL137793.2-201ENST00000632635 659 ntTSL 3 BASIC15.78■□□□□ 0.12
SMARCA1P28370 SLC35E2B-203ENST00000611123 5948 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
SMARCA1P28370 CD34-203ENST00000367036 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
SMARCA1P28370 MKRN2-203ENST00000448482 1679 ntTSL 5 BASIC15.78■□□□□ 0.12
SMARCA1P28370 AL355102.3-201ENST00000554299 1678 ntBASIC15.78■□□□□ 0.12
SMARCA1P28370 AMACR-203ENST00000382072 2919 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
SMARCA1P28370 PNPLA6-202ENST00000414982 4522 ntTSL 2 BASIC15.78■□□□□ 0.12
SMARCA1P28370 CEP128-201ENST00000216517 1606 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
SMARCA1P28370 GCM2-201ENST00000379491 2441 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
SMARCA1P28370 ENDOD1-201ENST00000278505 4687 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
SMARCA1P28370 PRSS16-203ENST00000421826 1949 ntTSL 2 BASIC15.78■□□□□ 0.12
SMARCA1P28370 MSH5-202ENST00000375740 2669 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
SMARCA1P28370 DYRK4-201ENST00000010132 1840 ntAPPRIS P2 TSL 5 BASIC15.78■□□□□ 0.12
SMARCA1P28370 HS3ST5-201ENST00000312719 3901 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.12
SMARCA1P28370 JPH4-201ENST00000356300 4278 ntAPPRIS P2 TSL 1 (best) BASIC15.77■□□□□ 0.12
SMARCA1P28370 USP19-203ENST00000398892 4622 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.12
SMARCA1P28370 OPA1-203ENST00000361715 6384 ntTSL 5 BASIC15.77■□□□□ 0.12
SMARCA1P28370 AADAT-206ENST00000509167 2113 ntAPPRIS ALT1 TSL 1 (best) BASIC15.77■□□□□ 0.12
SMARCA1P28370 TMEM200C-202ENST00000581347 10638 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.12
SMARCA1P28370 NOP14-203ENST00000416614 3538 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.12
SMARCA1P28370 DENND5B-202ENST00000389082 9470 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.12
SMARCA1P28370 DYRK1B-202ENST00000348817 2448 ntTSL 5 BASIC15.77■□□□□ 0.12
SMARCA1P28370 APOLD1-201ENST00000326765 4724 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
SMARCA1P28370 CTBP2P8-201ENST00000422584 1330 ntBASIC15.77■□□□□ 0.12
SMARCA1P28370 CSNK1E-201ENST00000359867 2642 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
SMARCA1P28370 STAMBP-204ENST00000409707 1649 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.12
SMARCA1P28370 Z82195.2-202ENST00000458525 1646 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
SMARCA1P28370 SFSWAP-201ENST00000261674 3246 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.12
SMARCA1P28370 GGA1-206ENST00000406772 3205 ntTSL 2 BASIC15.77■□□□□ 0.12
SMARCA1P28370 SLC5A11-211ENST00000569071 1919 ntTSL 5 BASIC15.77■□□□□ 0.12
SMARCA1P28370 TMEM176B-201ENST00000326442 1129 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
SMARCA1P28370 CASP8-206ENST00000392258 1060 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
SMARCA1P28370 TPRKB-203ENST00000409716 816 ntTSL 5 BASIC15.77■□□□□ 0.12
SMARCA1P28370 AL357079.1-203ENST00000412378 494 ntTSL 5 BASIC15.77■□□□□ 0.12
SMARCA1P28370 AC078852.2-201ENST00000504748 527 ntTSL 5 BASIC15.77■□□□□ 0.12
SMARCA1P28370 AC108142.1-201ENST00000505389 286 ntTSL 3 BASIC15.77■□□□□ 0.12
SMARCA1P28370 AC103736.1-201ENST00000524410 605 ntTSL 3 BASIC15.77■□□□□ 0.12
SMARCA1P28370 PIGCP1-201ENST00000527583 895 ntBASIC15.77■□□□□ 0.12
SMARCA1P28370 AC145207.8-201ENST00000580897 563 ntTSL 4 BASIC15.77■□□□□ 0.12
SMARCA1P28370 OVOL3-201ENST00000585332 695 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.12
SMARCA1P28370 ZNF790-AS1-203ENST00000588906 850 ntTSL 2 BASIC15.77■□□□□ 0.12
SMARCA1P28370 MIR7845-201ENST00000618396 99 ntBASIC15.77■□□□□ 0.12
SMARCA1P28370 Z82244.1-201ENST00000631502 840 ntBASIC15.77■□□□□ 0.12
SMARCA1P28370 OVOL3-202ENST00000633214 675 ntAPPRIS P2 TSL 5 BASIC15.77■□□□□ 0.12
SMARCA1P28370 KDM2B-201ENST00000377069 5224 ntAPPRIS ALT2 TSL 2 BASIC15.77■□□□□ 0.11
SMARCA1P28370 PDHB-201ENST00000302746 1527 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
SMARCA1P28370 EFEMP1-201ENST00000355426 1820 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
SMARCA1P28370 GDPD5-215ENST00000533805 2424 ntTSL 2 BASIC15.77■□□□□ 0.11
SMARCA1P28370 AC009133.1-201ENST00000569981 2449 ntTSL 2 BASIC15.77■□□□□ 0.11
SMARCA1P28370 CYB561D1-204ENST00000420578 3326 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.11
SMARCA1P28370 CDK17-201ENST00000261211 4157 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
SMARCA1P28370 PI4KAP2-201ENST00000360806 2080 ntBASIC15.77■□□□□ 0.11
SMARCA1P28370 SLC7A9-201ENST00000023064 1761 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
SMARCA1P28370 GFI1B-202ENST00000372122 1797 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
SMARCA1P28370 FGFR1-201ENST00000326324 3816 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
SMARCA1P28370 KCNT1-207ENST00000487664 3845 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.11
SMARCA1P28370 TRDMT1-203ENST00000377799 3527 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
SMARCA1P28370 LINC01744-201ENST00000457698 2042 ntTSL 2 BASIC15.77■□□□□ 0.11
SMARCA1P28370 COL6A2-202ENST00000310645 3446 ntTSL 5 BASIC15.77■□□□□ 0.11
SMARCA1P28370 C16orf82-201ENST00000418886 2268 ntAPPRIS ALT2 BASIC15.77■□□□□ 0.11
SMARCA1P28370 LSS-211ENST00000522411 2523 ntTSL 2 BASIC15.76■□□□□ 0.11
SMARCA1P28370 WSCD1-201ENST00000317744 5819 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
SMARCA1P28370 MROH1-207ENST00000528919 5234 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
SMARCA1P28370 ARRDC5-201ENST00000381781 1638 ntAPPRIS P1 TSL 3 BASIC15.76■□□□□ 0.11
SMARCA1P28370 PPP1R12A-AS1-201ENST00000552885 3234 ntTSL 3 BASIC15.76■□□□□ 0.11
SMARCA1P28370 ZMYM3-204ENST00000373982 1867 ntTSL 5 BASIC15.76■□□□□ 0.11
SMARCA1P28370 BAK1-202ENST00000374467 2136 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
SMARCA1P28370 AC004623.1-201ENST00000624592 2127 ntBASIC15.76■□□□□ 0.11
SMARCA1P28370 SPAG9-222ENST00000618113 8246 ntAPPRIS ALT1 TSL 5 BASIC15.76■□□□□ 0.11
SMARCA1P28370 MAEA-207ENST00000505177 1340 ntTSL 5 BASIC15.76■□□□□ 0.11
SMARCA1P28370 ZFP30-201ENST00000351218 6090 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
SMARCA1P28370 NR3C1-203ENST00000394464 6795 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
SMARCA1P28370 GPR137C-201ENST00000321662 3888 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
SMARCA1P28370 DEDD-202ENST00000368006 2345 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
SMARCA1P28370 FLAD1-202ENST00000295530 1211 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
SMARCA1P28370 GTF3C6-201ENST00000329970 952 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
SMARCA1P28370 CCDC167-201ENST00000373408 619 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
SMARCA1P28370 STX1A-202ENST00000395154 1022 ntTSL 3 BASIC15.76■□□□□ 0.11
SMARCA1P28370 AC007952.2-201ENST00000399091 1176 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
SMARCA1P28370 SERF2-204ENST00000402131 586 ntTSL 2 BASIC15.76■□□□□ 0.11
SMARCA1P28370 AC016730.1-201ENST00000420828 832 ntTSL 2 BASIC15.76■□□□□ 0.11
SMARCA1P28370 AC083949.1-201ENST00000422013 657 ntTSL 3 BASIC15.76■□□□□ 0.11
SMARCA1P28370 AC092265.1-201ENST00000422638 498 ntTSL 2 BASIC15.76■□□□□ 0.11
SMARCA1P28370 AC136604.1-202ENST00000425471 771 ntBASIC15.76■□□□□ 0.11
SMARCA1P28370 THRB-AS1-202ENST00000438096 702 ntTSL 3 BASIC15.76■□□□□ 0.11
SMARCA1P28370 RORA-AS1-201ENST00000501579 761 ntTSL 5 BASIC15.76■□□□□ 0.11
SMARCA1P28370 LINC02063-201ENST00000503415 566 ntTSL 4 BASIC15.76■□□□□ 0.11
SMARCA1P28370 AC108199.1-201ENST00000504249 508 ntTSL 3 BASIC15.76■□□□□ 0.11
SMARCA1P28370 KRT18P37-201ENST00000520711 1282 ntBASIC15.76■□□□□ 0.11
SMARCA1P28370 VDAC3-211ENST00000522572 799 ntTSL 5 BASIC15.76■□□□□ 0.11
SMARCA1P28370 RNASEK-204ENST00000552039 591 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
SMARCA1P28370 RNASEK-210ENST00000593646 566 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
SMARCA1P28370 AC137723.2-201ENST00000623540 398 ntBASIC15.76■□□□□ 0.11
SMARCA1P28370 MBOAT4-201ENST00000320542 1512 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
SMARCA1P28370 ADGRE2-208ENST00000595839 2046 ntTSL 5 BASIC15.76■□□□□ 0.11
SMARCA1P28370 FRMD8-202ENST00000355991 3514 ntTSL 2 BASIC15.76■□□□□ 0.11
SMARCA1P28370 MSI1-201ENST00000257552 2975 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
SMARCA1P28370 EFHC2-202ENST00000420999 2464 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
SMARCA1P28370 FUT3-207ENST00000589620 2239 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
SMARCA1P28370 MRPL17-201ENST00000288937 1969 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 55 ms