Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC28.73■■■□□ 2.19
USP42Q9H9J4 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC28.73■■■□□ 2.19
USP42Q9H9J4 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC28.73■■■□□ 2.19
USP42Q9H9J4 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC28.73■■■□□ 2.19
USP42Q9H9J4 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC28.73■■■□□ 2.19
USP42Q9H9J4 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC28.73■■■□□ 2.19
USP42Q9H9J4 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC28.73■■■□□ 2.19
USP42Q9H9J4 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC28.73■■■□□ 2.19
USP42Q9H9J4 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC28.72■■■□□ 2.19
USP42Q9H9J4 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC28.72■■■□□ 2.19
USP42Q9H9J4 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC28.72■■■□□ 2.19
USP42Q9H9J4 MIR572-201ENST00000384983 95 ntBASIC28.72■■■□□ 2.19
USP42Q9H9J4 AC004911.1-201ENST00000416316 871 ntBASIC28.72■■■□□ 2.19
USP42Q9H9J4 DLX3-202ENST00000512495 834 ntTSL 2 BASIC28.72■■■□□ 2.19
USP42Q9H9J4 AC012414.1-201ENST00000556676 535 ntBASIC28.72■■■□□ 2.19
USP42Q9H9J4 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC28.72■■■□□ 2.19
USP42Q9H9J4 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC28.71■■■□□ 2.19
USP42Q9H9J4 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC28.71■■■□□ 2.19
USP42Q9H9J4 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC28.71■■■□□ 2.19
USP42Q9H9J4 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC28.71■■■□□ 2.19
USP42Q9H9J4 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC28.71■■■□□ 2.19
USP42Q9H9J4 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC28.71■■■□□ 2.19
USP42Q9H9J4 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC28.71■■■□□ 2.19
USP42Q9H9J4 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC28.71■■■□□ 2.19
USP42Q9H9J4 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC28.7■■■□□ 2.19
USP42Q9H9J4 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC28.7■■■□□ 2.19
USP42Q9H9J4 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC28.7■■■□□ 2.19
USP42Q9H9J4 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC28.7■■■□□ 2.18
USP42Q9H9J4 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC28.7■■■□□ 2.18
USP42Q9H9J4 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC28.7■■■□□ 2.18
USP42Q9H9J4 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC28.7■■■□□ 2.18
USP42Q9H9J4 AL161729.1-201ENST00000604104 1402 ntBASIC28.7■■■□□ 2.18
USP42Q9H9J4 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC28.7■■■□□ 2.18
USP42Q9H9J4 CCDC92B-201ENST00000575506 885 ntBASIC28.69■■■□□ 2.18
USP42Q9H9J4 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC28.69■■■□□ 2.18
USP42Q9H9J4 AC141586.4-201ENST00000624558 1573 ntBASIC28.69■■■□□ 2.18
USP42Q9H9J4 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC28.69■■■□□ 2.18
USP42Q9H9J4 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC28.69■■■□□ 2.18
USP42Q9H9J4 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC28.69■■■□□ 2.18
USP42Q9H9J4 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC28.69■■■□□ 2.18
USP42Q9H9J4 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC28.69■■■□□ 2.18
USP42Q9H9J4 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC28.69■■■□□ 2.18
USP42Q9H9J4 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC28.69■■■□□ 2.18
USP42Q9H9J4 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC28.69■■■□□ 2.18
USP42Q9H9J4 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC28.69■■■□□ 2.18
USP42Q9H9J4 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC28.69■■■□□ 2.18
USP42Q9H9J4 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC28.68■■■□□ 2.18
USP42Q9H9J4 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC28.68■■■□□ 2.18
USP42Q9H9J4 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC28.68■■■□□ 2.18
USP42Q9H9J4 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC28.68■■■□□ 2.18
USP42Q9H9J4 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC28.68■■■□□ 2.18
USP42Q9H9J4 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC28.68■■■□□ 2.18
USP42Q9H9J4 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC28.68■■■□□ 2.18
USP42Q9H9J4 EED-207ENST00000528180 1745 ntTSL 5 BASIC28.67■■■□□ 2.18
USP42Q9H9J4 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC28.67■■■□□ 2.18
USP42Q9H9J4 ID1-201ENST00000376105 1233 ntBASIC28.67■■■□□ 2.18
USP42Q9H9J4 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC28.67■■■□□ 2.18
USP42Q9H9J4 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC28.67■■■□□ 2.18
USP42Q9H9J4 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC28.67■■■□□ 2.18
USP42Q9H9J4 AL354811.1-201ENST00000610286 706 ntBASIC28.67■■■□□ 2.18
USP42Q9H9J4 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC28.67■■■□□ 2.18
USP42Q9H9J4 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC28.67■■■□□ 2.18
USP42Q9H9J4 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC28.66■■■□□ 2.18
USP42Q9H9J4 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC28.66■■■□□ 2.18
USP42Q9H9J4 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC28.66■■■□□ 2.18
USP42Q9H9J4 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC28.66■■■□□ 2.18
USP42Q9H9J4 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC28.66■■■□□ 2.18
USP42Q9H9J4 AL139125.2-201ENST00000623134 1869 ntBASIC28.66■■■□□ 2.18
USP42Q9H9J4 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC28.66■■■□□ 2.18
USP42Q9H9J4 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC28.66■■■□□ 2.18
USP42Q9H9J4 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC28.66■■■□□ 2.18
USP42Q9H9J4 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC28.66■■■□□ 2.18
USP42Q9H9J4 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC28.65■■■□□ 2.18
USP42Q9H9J4 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC28.65■■■□□ 2.18
USP42Q9H9J4 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC28.65■■■□□ 2.18
USP42Q9H9J4 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC28.65■■■□□ 2.18
USP42Q9H9J4 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC28.65■■■□□ 2.18
USP42Q9H9J4 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC28.65■■■□□ 2.18
USP42Q9H9J4 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC28.64■■■□□ 2.18
USP42Q9H9J4 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC28.64■■■□□ 2.18
USP42Q9H9J4 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC28.64■■■□□ 2.18
USP42Q9H9J4 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC28.64■■■□□ 2.18
USP42Q9H9J4 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC28.64■■■□□ 2.17
USP42Q9H9J4 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC28.64■■■□□ 2.17
USP42Q9H9J4 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC28.64■■■□□ 2.17
USP42Q9H9J4 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC28.64■■■□□ 2.17
USP42Q9H9J4 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC28.64■■■□□ 2.17
USP42Q9H9J4 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC28.64■■■□□ 2.17
USP42Q9H9J4 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC28.64■■■□□ 2.17
USP42Q9H9J4 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC28.64■■■□□ 2.17
USP42Q9H9J4 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC28.64■■■□□ 2.17
USP42Q9H9J4 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC28.63■■■□□ 2.17
USP42Q9H9J4 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC28.63■■■□□ 2.17
USP42Q9H9J4 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC28.63■■■□□ 2.17
USP42Q9H9J4 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC28.63■■■□□ 2.17
USP42Q9H9J4 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC28.63■■■□□ 2.17
USP42Q9H9J4 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC28.63■■■□□ 2.17
USP42Q9H9J4 VPS53-216ENST00000574029 585 ntTSL 4 BASIC28.63■■■□□ 2.17
USP42Q9H9J4 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
USP42Q9H9J4 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
Retrieved 100 of 98,524 protein–RNA pairs in 55 ms