Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC21.45■■□□□ 1.03
CLHC1Q8NHS4 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC21.45■■□□□ 1.03
CLHC1Q8NHS4 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC21.45■■□□□ 1.02
CLHC1Q8NHS4 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
CLHC1Q8NHS4 SNX5-217ENST00000606557 1087 ntBASIC21.45■■□□□ 1.02
CLHC1Q8NHS4 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC21.45■■□□□ 1.02
CLHC1Q8NHS4 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
CLHC1Q8NHS4 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
CLHC1Q8NHS4 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
CLHC1Q8NHS4 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC21.44■■□□□ 1.02
CLHC1Q8NHS4 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC21.44■■□□□ 1.02
CLHC1Q8NHS4 LSM7-203ENST00000585409 512 ntTSL 2 BASIC21.44■■□□□ 1.02
CLHC1Q8NHS4 AL031848.2-201ENST00000607670 837 ntBASIC21.44■■□□□ 1.02
CLHC1Q8NHS4 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC21.44■■□□□ 1.02
CLHC1Q8NHS4 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
CLHC1Q8NHS4 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
CLHC1Q8NHS4 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC21.44■■□□□ 1.02
CLHC1Q8NHS4 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC21.44■■□□□ 1.02
CLHC1Q8NHS4 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC21.44■■□□□ 1.02
CLHC1Q8NHS4 STK25-234ENST00000535007 2459 ntTSL 2 BASIC21.44■■□□□ 1.02
CLHC1Q8NHS4 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC21.44■■□□□ 1.02
CLHC1Q8NHS4 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC21.43■■□□□ 1.02
CLHC1Q8NHS4 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
CLHC1Q8NHS4 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC21.43■■□□□ 1.02
CLHC1Q8NHS4 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC21.43■■□□□ 1.02
CLHC1Q8NHS4 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC21.43■■□□□ 1.02
CLHC1Q8NHS4 TK2-216ENST00000564917 1156 ntTSL 3 BASIC21.43■■□□□ 1.02
CLHC1Q8NHS4 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
CLHC1Q8NHS4 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
CLHC1Q8NHS4 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC21.43■■□□□ 1.02
CLHC1Q8NHS4 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC21.43■■□□□ 1.02
CLHC1Q8NHS4 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
CLHC1Q8NHS4 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC21.43■■□□□ 1.02
CLHC1Q8NHS4 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC21.43■■□□□ 1.02
CLHC1Q8NHS4 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC21.43■■□□□ 1.02
CLHC1Q8NHS4 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
CLHC1Q8NHS4 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
CLHC1Q8NHS4 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
CLHC1Q8NHS4 TK2-202ENST00000417693 1046 ntTSL 2 BASIC21.42■■□□□ 1.02
CLHC1Q8NHS4 SENP5-202ENST00000419026 973 ntTSL 3 BASIC21.42■■□□□ 1.02
CLHC1Q8NHS4 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
CLHC1Q8NHS4 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC21.42■■□□□ 1.02
CLHC1Q8NHS4 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC21.42■■□□□ 1.02
CLHC1Q8NHS4 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
CLHC1Q8NHS4 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC21.41■■□□□ 1.02
CLHC1Q8NHS4 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC21.41■■□□□ 1.02
CLHC1Q8NHS4 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC21.41■■□□□ 1.02
CLHC1Q8NHS4 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC21.41■■□□□ 1.02
CLHC1Q8NHS4 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC21.41■■□□□ 1.02
CLHC1Q8NHS4 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC21.41■■□□□ 1.02
CLHC1Q8NHS4 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC21.41■■□□□ 1.02
CLHC1Q8NHS4 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
CLHC1Q8NHS4 REST-206ENST00000612429 1376 ntTSL 5 BASIC21.4■■□□□ 1.02
CLHC1Q8NHS4 REST-207ENST00000616975 1370 ntTSL 5 BASIC21.4■■□□□ 1.02
CLHC1Q8NHS4 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
CLHC1Q8NHS4 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC21.4■■□□□ 1.02
CLHC1Q8NHS4 AL353803.4-201ENST00000565882 1934 ntBASIC21.4■■□□□ 1.02
CLHC1Q8NHS4 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC21.4■■□□□ 1.02
CLHC1Q8NHS4 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC21.4■■□□□ 1.02
CLHC1Q8NHS4 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
CLHC1Q8NHS4 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC21.4■■□□□ 1.02
CLHC1Q8NHS4 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC21.4■■□□□ 1.02
CLHC1Q8NHS4 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC21.4■■□□□ 1.02
CLHC1Q8NHS4 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC21.4■■□□□ 1.02
CLHC1Q8NHS4 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
CLHC1Q8NHS4 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
CLHC1Q8NHS4 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC21.4■■□□□ 1.02
CLHC1Q8NHS4 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
CLHC1Q8NHS4 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
CLHC1Q8NHS4 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
CLHC1Q8NHS4 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
CLHC1Q8NHS4 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC21.39■■□□□ 1.01
CLHC1Q8NHS4 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
CLHC1Q8NHS4 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC21.39■■□□□ 1.01
CLHC1Q8NHS4 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC21.39■■□□□ 1.01
CLHC1Q8NHS4 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC21.39■■□□□ 1.01
CLHC1Q8NHS4 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC21.38■■□□□ 1.01
CLHC1Q8NHS4 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
CLHC1Q8NHS4 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
CLHC1Q8NHS4 GUSBP5-202ENST00000510805 1989 ntBASIC21.38■■□□□ 1.01
CLHC1Q8NHS4 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC21.38■■□□□ 1.01
CLHC1Q8NHS4 AC137630.3-201ENST00000607245 391 ntBASIC21.38■■□□□ 1.01
CLHC1Q8NHS4 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC21.38■■□□□ 1.01
CLHC1Q8NHS4 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC21.38■■□□□ 1.01
CLHC1Q8NHS4 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
CLHC1Q8NHS4 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
CLHC1Q8NHS4 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC21.37■■□□□ 1.01
CLHC1Q8NHS4 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
CLHC1Q8NHS4 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC21.37■■□□□ 1.01
CLHC1Q8NHS4 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC21.37■■□□□ 1.01
CLHC1Q8NHS4 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC21.37■■□□□ 1.01
CLHC1Q8NHS4 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC21.37■■□□□ 1.01
CLHC1Q8NHS4 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC21.37■■□□□ 1.01
CLHC1Q8NHS4 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
CLHC1Q8NHS4 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
CLHC1Q8NHS4 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
CLHC1Q8NHS4 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC21.36■■□□□ 1.01
CLHC1Q8NHS4 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC21.36■■□□□ 1.01
CLHC1Q8NHS4 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC21.36■■□□□ 1.01
CLHC1Q8NHS4 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 19.2 ms