Protein–RNA interactions for Protein: A0A5B6

TCRBV3S1, T-cell receptor beta variable 28 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV3S1A0A5B6 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
TCRBV3S1A0A5B6 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
TCRBV3S1A0A5B6 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC21.07■□□□□ 0.96
TCRBV3S1A0A5B6 SLC25A24-204ENST00000569674 2357 ntBASIC21.07■□□□□ 0.96
TCRBV3S1A0A5B6 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
TCRBV3S1A0A5B6 AC131274.2-201ENST00000580697 1507 ntBASIC21.06■□□□□ 0.96
TCRBV3S1A0A5B6 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC21.06■□□□□ 0.96
TCRBV3S1A0A5B6 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
TCRBV3S1A0A5B6 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
TCRBV3S1A0A5B6 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
TCRBV3S1A0A5B6 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
TCRBV3S1A0A5B6 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
TCRBV3S1A0A5B6 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
TCRBV3S1A0A5B6 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
TCRBV3S1A0A5B6 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
TCRBV3S1A0A5B6 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC21.05■□□□□ 0.96
TCRBV3S1A0A5B6 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC21.05■□□□□ 0.96
TCRBV3S1A0A5B6 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
TCRBV3S1A0A5B6 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
TCRBV3S1A0A5B6 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC21.05■□□□□ 0.96
TCRBV3S1A0A5B6 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC21.05■□□□□ 0.96
TCRBV3S1A0A5B6 AC026310.3-201ENST00000625186 2373 ntBASIC21.04■□□□□ 0.96
TCRBV3S1A0A5B6 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
TCRBV3S1A0A5B6 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
TCRBV3S1A0A5B6 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC21.04■□□□□ 0.96
TCRBV3S1A0A5B6 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC21.04■□□□□ 0.96
TCRBV3S1A0A5B6 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
TCRBV3S1A0A5B6 AL592295.1-201ENST00000400984 884 ntBASIC21.04■□□□□ 0.96
TCRBV3S1A0A5B6 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
TCRBV3S1A0A5B6 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC21.04■□□□□ 0.96
TCRBV3S1A0A5B6 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
TCRBV3S1A0A5B6 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC21.04■□□□□ 0.96
TCRBV3S1A0A5B6 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
TCRBV3S1A0A5B6 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
TCRBV3S1A0A5B6 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
TCRBV3S1A0A5B6 TPT1-202ENST00000379055 948 ntTSL 2 BASIC21.03■□□□□ 0.96
TCRBV3S1A0A5B6 RPS2P7-201ENST00000447334 885 ntBASIC21.03■□□□□ 0.96
TCRBV3S1A0A5B6 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC21.03■□□□□ 0.96
TCRBV3S1A0A5B6 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
TCRBV3S1A0A5B6 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC21.03■□□□□ 0.96
TCRBV3S1A0A5B6 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC21.03■□□□□ 0.96
TCRBV3S1A0A5B6 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC21.03■□□□□ 0.96
TCRBV3S1A0A5B6 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
TCRBV3S1A0A5B6 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
TCRBV3S1A0A5B6 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC21.02■□□□□ 0.96
TCRBV3S1A0A5B6 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC21.02■□□□□ 0.96
TCRBV3S1A0A5B6 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC21.02■□□□□ 0.96
TCRBV3S1A0A5B6 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
TCRBV3S1A0A5B6 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC21.02■□□□□ 0.96
TCRBV3S1A0A5B6 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.95
TCRBV3S1A0A5B6 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC21.02■□□□□ 0.95
TCRBV3S1A0A5B6 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
TCRBV3S1A0A5B6 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
TCRBV3S1A0A5B6 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
TCRBV3S1A0A5B6 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
TCRBV3S1A0A5B6 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC21.01■□□□□ 0.95
TCRBV3S1A0A5B6 AC022413.1-201ENST00000624602 984 ntBASIC21.01■□□□□ 0.95
TCRBV3S1A0A5B6 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC21.01■□□□□ 0.95
TCRBV3S1A0A5B6 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
TCRBV3S1A0A5B6 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC21.01■□□□□ 0.95
TCRBV3S1A0A5B6 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC21.01■□□□□ 0.95
TCRBV3S1A0A5B6 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
TCRBV3S1A0A5B6 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
TCRBV3S1A0A5B6 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
TCRBV3S1A0A5B6 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC21■□□□□ 0.95
TCRBV3S1A0A5B6 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC21■□□□□ 0.95
TCRBV3S1A0A5B6 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC21■□□□□ 0.95
TCRBV3S1A0A5B6 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
TCRBV3S1A0A5B6 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC21■□□□□ 0.95
TCRBV3S1A0A5B6 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC21■□□□□ 0.95
TCRBV3S1A0A5B6 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
TCRBV3S1A0A5B6 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
TCRBV3S1A0A5B6 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC21■□□□□ 0.95
TCRBV3S1A0A5B6 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
TCRBV3S1A0A5B6 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
TCRBV3S1A0A5B6 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
TCRBV3S1A0A5B6 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
TCRBV3S1A0A5B6 STK32C-205ENST00000456004 607 ntTSL 2 BASIC20.99■□□□□ 0.95
TCRBV3S1A0A5B6 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC20.99■□□□□ 0.95
TCRBV3S1A0A5B6 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC20.99■□□□□ 0.95
TCRBV3S1A0A5B6 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
TCRBV3S1A0A5B6 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
TCRBV3S1A0A5B6 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
TCRBV3S1A0A5B6 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
TCRBV3S1A0A5B6 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC20.98■□□□□ 0.95
TCRBV3S1A0A5B6 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC20.98■□□□□ 0.95
TCRBV3S1A0A5B6 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC20.98■□□□□ 0.95
TCRBV3S1A0A5B6 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
TCRBV3S1A0A5B6 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
TCRBV3S1A0A5B6 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
TCRBV3S1A0A5B6 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC20.98■□□□□ 0.95
TCRBV3S1A0A5B6 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
TCRBV3S1A0A5B6 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC20.98■□□□□ 0.95
TCRBV3S1A0A5B6 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC20.98■□□□□ 0.95
TCRBV3S1A0A5B6 AC087742.1-201ENST00000575880 1738 ntBASIC20.98■□□□□ 0.95
TCRBV3S1A0A5B6 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
TCRBV3S1A0A5B6 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC20.98■□□□□ 0.95
TCRBV3S1A0A5B6 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
TCRBV3S1A0A5B6 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
TCRBV3S1A0A5B6 PALM-208ENST00000592155 2272 ntTSL 4 BASIC20.97■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 18.8 ms