Protein–RNA interactions for Protein: Q61572

Foxc1, Forkhead box protein C1, mousemouse

Predictions only

Length 553 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Foxc1Q61572 Wsb2-201ENSMUST00000031309 2421 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
Foxc1Q61572 Dnttip1-202ENSMUST00000109326 476 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Foxc1Q61572 Cenpv-201ENSMUST00000018653 1032 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Foxc1Q61572 Rnf130-202ENSMUST00000102776 1502 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Foxc1Q61572 Ndufaf6-201ENSMUST00000058183 1082 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Foxc1Q61572 Sec63-201ENSMUST00000019937 6032 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Foxc1Q61572 Orai1-202ENSMUST00000121652 1875 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Foxc1Q61572 Homer3-202ENSMUST00000087467 880 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Foxc1Q61572 Ccdc9-202ENSMUST00000118976 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Foxc1Q61572 Popdc3-202ENSMUST00000161803 1369 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Foxc1Q61572 Mocs3-201ENSMUST00000099071 1973 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
Foxc1Q61572 Fxyd1-205ENSMUST00000205439 535 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
Foxc1Q61572 Zfp131-205ENSMUST00000223812 663 ntBASIC18.74■□□□□ 0.59
Foxc1Q61572 Yif1b-202ENSMUST00000108237 1086 ntTSL 5 BASIC18.73■□□□□ 0.59
Foxc1Q61572 Ppp1cc-201ENSMUST00000086294 1442 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Foxc1Q61572 Tmeff1-201ENSMUST00000030032 2461 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Foxc1Q61572 Fcho2-203ENSMUST00000109403 1523 ntTSL 5 BASIC18.7■□□□□ 0.58
Foxc1Q61572 Dapk3-209ENSMUST00000219850 1482 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Foxc1Q61572 Mkrn1-202ENSMUST00000051671 1511 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Foxc1Q61572 Rab22a-202ENSMUST00000109110 849 ntTSL 5 BASIC18.65■□□□□ 0.58
Foxc1Q61572 Gltp-203ENSMUST00000112214 944 ntTSL 3 BASIC18.65■□□□□ 0.58
Foxc1Q61572 Btf3-201ENSMUST00000022163 1091 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Foxc1Q61572 Ctbp1-206ENSMUST00000201575 2091 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Foxc1Q61572 Raly-203ENSMUST00000109701 1709 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
Foxc1Q61572 Frs3-201ENSMUST00000113296 2144 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Foxc1Q61572 Reps1-206ENSMUST00000154718 2402 ntTSL 5 BASIC18.64■□□□□ 0.57
Foxc1Q61572 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
Foxc1Q61572 E2f4-201ENSMUST00000015003 1993 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Foxc1Q61572 Vdac3-202ENSMUST00000179233 1423 ntAPPRIS ALT1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Foxc1Q61572 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC18.61■□□□□ 0.57
Foxc1Q61572 Pard6a-205ENSMUST00000212430 1261 ntAPPRIS ALT1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Foxc1Q61572 Gm42517-201ENSMUST00000197216 1850 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
Foxc1Q61572 Peli2-204ENSMUST00000226513 1320 ntBASIC18.59■□□□□ 0.57
Foxc1Q61572 Srp9-202ENSMUST00000111018 823 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Foxc1Q61572 Vstm2l-201ENSMUST00000109523 1363 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.57
Foxc1Q61572 Syt7-201ENSMUST00000073899 1605 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Foxc1Q61572 Exosc6-201ENSMUST00000210390 1326 ntAPPRIS P1 BASIC18.57■□□□□ 0.56
Foxc1Q61572 Gm16148-201ENSMUST00000119653 893 ntBASIC18.57■□□□□ 0.56
Foxc1Q61572 1700069B07Rik-202ENSMUST00000191155 939 ntBASIC18.57■□□□□ 0.56
Foxc1Q61572 Rbfox2-201ENSMUST00000048145 1720 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Foxc1Q61572 Pwwp2a-202ENSMUST00000094294 1814 ntTSL 5 BASIC18.56■□□□□ 0.56
Foxc1Q61572 Srsf9-201ENSMUST00000031513 1162 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Foxc1Q61572 Chrna5-202ENSMUST00000213960 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
Foxc1Q61572 Abhd17a-201ENSMUST00000003436 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Foxc1Q61572 Crlf1-201ENSMUST00000008032 1644 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Foxc1Q61572 Ssbp3-203ENSMUST00000097934 1742 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
Foxc1Q61572 Gm26566-201ENSMUST00000181601 1038 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
Foxc1Q61572 Gm42984-201ENSMUST00000195990 987 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Foxc1Q61572 Dlx4-201ENSMUST00000021241 2282 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Foxc1Q61572 Fndc10-201ENSMUST00000099265 2140 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
Foxc1Q61572 Mon2-207ENSMUST00000219203 1844 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Foxc1Q61572 2210008F06Rik-201ENSMUST00000180805 1082 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Foxc1Q61572 Ppp2r2d-201ENSMUST00000041097 2081 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Foxc1Q61572 Tnfsf12-202ENSMUST00000181810 1435 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Foxc1Q61572 Ankrd28-201ENSMUST00000014640 6712 ntAPPRIS P2 TSL 1 (best) BASIC18.5■□□□□ 0.55
Foxc1Q61572 Dhrs13-203ENSMUST00000122342 1791 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Foxc1Q61572 C330011M18Rik-201ENSMUST00000071067 1849 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Foxc1Q61572 Rundc3a-201ENSMUST00000006750 2046 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
Foxc1Q61572 Zxda-201ENSMUST00000117281 2621 ntBASIC18.48■□□□□ 0.55
Foxc1Q61572 Kcnmb4os2-201ENSMUST00000080943 1571 ntTSL 5 BASIC18.47■□□□□ 0.55
Foxc1Q61572 Tnfsfm13-202ENSMUST00000174159 1470 ntAPPRIS ALT2 TSL 2 BASIC18.47■□□□□ 0.55
Foxc1Q61572 Coq10a-207ENSMUST00000220227 1434 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
Foxc1Q61572 Tmco6-201ENSMUST00000007046 1817 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Foxc1Q61572 Cgref1-201ENSMUST00000031051 1442 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
Foxc1Q61572 Eif2ak3-204ENSMUST00000162950 927 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
Foxc1Q61572 Tmem59-201ENSMUST00000030361 1775 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
Foxc1Q61572 Zswim6-201ENSMUST00000105097 5456 ntTSL 5 BASIC18.42■□□□□ 0.54
Foxc1Q61572 Prelid3b-201ENSMUST00000016401 1553 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Foxc1Q61572 Gltp-201ENSMUST00000012028 1762 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Foxc1Q61572 Gm2415-204ENSMUST00000190235 2004 ntBASIC18.4■□□□□ 0.54
Foxc1Q61572 Epb41l4b-203ENSMUST00000095076 6746 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
Foxc1Q61572 Gtf2a2-203ENSMUST00000119413 1034 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Foxc1Q61572 Pradc1-201ENSMUST00000032080 1038 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Foxc1Q61572 Dennd1b-209ENSMUST00000200533 1853 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Foxc1Q61572 Gm5601-202ENSMUST00000207161 1437 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Foxc1Q61572 Sh3glb2-203ENSMUST00000113620 1694 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Foxc1Q61572 Rpl19-ps4-201ENSMUST00000167150 625 ntBASIC18.36■□□□□ 0.53
Foxc1Q61572 Mapk3-202ENSMUST00000057669 1800 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Foxc1Q61572 Trp53rkb-202ENSMUST00000065753 1375 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
Foxc1Q61572 Fam60a-203ENSMUST00000111562 906 ntAPPRIS P1 TSL 3 BASIC18.35■□□□□ 0.53
Foxc1Q61572 A530058N18Rik-201ENSMUST00000128469 646 ntTSL 2 BASIC18.34■□□□□ 0.53
Foxc1Q61572 Nectin3-203ENSMUST00000096052 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Foxc1Q61572 Gkap1-201ENSMUST00000091579 1523 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Foxc1Q61572 Gm26859-201ENSMUST00000181743 1852 ntTSL 5 BASIC18.33■□□□□ 0.53
Foxc1Q61572 Ubl4a-207ENSMUST00000178691 1038 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
Foxc1Q61572 Ildr2-207ENSMUST00000195557 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
Foxc1Q61572 Tdp2-203ENSMUST00000223804 1136 ntBASIC18.32■□□□□ 0.52
Foxc1Q61572 Ccz1-201ENSMUST00000031621 1769 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Foxc1Q61572 Rragc-201ENSMUST00000030399 2593 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Foxc1Q61572 Nrg3-202ENSMUST00000168810 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Foxc1Q61572 1700028N14Rik-201ENSMUST00000139621 747 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Foxc1Q61572 Gm6658-202ENSMUST00000209493 1885 ntBASIC18.29■□□□□ 0.52
Foxc1Q61572 E330040D14Rik-201ENSMUST00000192299 1374 ntBASIC18.29■□□□□ 0.52
Foxc1Q61572 Tgfbr1-205ENSMUST00000126171 1829 ntTSL 5 BASIC18.28■□□□□ 0.52
Foxc1Q61572 Orai1-201ENSMUST00000051016 1482 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Foxc1Q61572 CT030161.2-201ENSMUST00000218666 735 ntTSL 3 BASIC18.28■□□□□ 0.52
Foxc1Q61572 Vsig8-202ENSMUST00000177086 1519 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Foxc1Q61572 Grasp-201ENSMUST00000000543 2013 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Foxc1Q61572 Ranbp1-202ENSMUST00000115645 1085 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Foxc1Q61572 Ccdc122-202ENSMUST00000095625 1195 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Retrieved 100 of 76,532 protein–RNA pairs in 53 ms