Protein–RNA interactions for Protein: P32958

Rom1, Rod outer segment membrane protein 1, mousemouse

Predictions only

Length 351 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rom1P32958 Mogs-201ENSMUST00000032114 2780 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Rom1P32958 Tpst1-201ENSMUST00000040721 2050 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Rom1P32958 Irf2bp2-201ENSMUST00000054960 5080 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
Rom1P32958 Rab2a-201ENSMUST00000060232 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Rom1P32958 Nectin3-203ENSMUST00000096052 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
Rom1P32958 Ywhah-201ENSMUST00000019109 1764 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Rom1P32958 Slc25a28-201ENSMUST00000046038 1514 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Rom1P32958 Galnt10-202ENSMUST00000108846 1745 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Rom1P32958 Traf4-201ENSMUST00000017530 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Rom1P32958 Raly-204ENSMUST00000116389 1759 ntAPPRIS ALT2 TSL 5 BASIC20.44■□□□□ 0.86
Rom1P32958 Gm45716-202ENSMUST00000134929 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Rom1P32958 Gltp-201ENSMUST00000012028 1762 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Rom1P32958 Nrep-202ENSMUST00000168890 2185 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Rom1P32958 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC20.4■□□□□ 0.86
Rom1P32958 Zfp131-206ENSMUST00000223813 2561 ntAPPRIS P3 BASIC20.4■□□□□ 0.86
Rom1P32958 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Rom1P32958 Ankrd28-201ENSMUST00000014640 6712 ntAPPRIS P2 TSL 1 (best) BASIC20.4■□□□□ 0.86
Rom1P32958 Fam120a-201ENSMUST00000060805 5105 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Rom1P32958 Ppp1r14c-202ENSMUST00000217573 2013 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
Rom1P32958 Shf-201ENSMUST00000048635 1431 ntAPPRIS P2 TSL 1 (best) BASIC20.39■□□□□ 0.85
Rom1P32958 Smad7-202ENSMUST00000168918 1882 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Rom1P32958 Phf10-201ENSMUST00000024657 1663 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Rom1P32958 Grasp-201ENSMUST00000000543 2013 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Rom1P32958 Micu3-201ENSMUST00000068999 2219 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
Rom1P32958 En1-201ENSMUST00000079721 2624 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Rom1P32958 Gm43445-201ENSMUST00000198564 2091 ntBASIC20.35■□□□□ 0.85
Rom1P32958 Ctbp1-201ENSMUST00000079746 2279 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
Rom1P32958 Zfp787-201ENSMUST00000094870 1897 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Rom1P32958 Ebag9-203ENSMUST00000227691 1945 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
Rom1P32958 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC20.33■□□□□ 0.85
Rom1P32958 Pfdn2-202ENSMUST00000135941 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Rom1P32958 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Rom1P32958 Carnmt1-201ENSMUST00000025632 2090 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Rom1P32958 Arl2bp-201ENSMUST00000034228 2063 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Rom1P32958 Gm25238-201ENSMUST00000174914 89 ntBASIC20.32■□□□□ 0.84
Rom1P32958 Tmem189-201ENSMUST00000006587 2329 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Rom1P32958 Foxc1-201ENSMUST00000062292 5844 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
Rom1P32958 Tspan3-201ENSMUST00000034876 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Rom1P32958 Ube2q2-202ENSMUST00000121677 1680 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
Rom1P32958 Ring1-201ENSMUST00000025183 2034 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Rom1P32958 Gnaq-201ENSMUST00000025541 5644 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Rom1P32958 Kdm2a-203ENSMUST00000116571 2413 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Rom1P32958 Htra4-201ENSMUST00000084031 2180 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Rom1P32958 Ric1-206ENSMUST00000162184 2157 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Rom1P32958 Rhobtb3-202ENSMUST00000109606 1676 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Rom1P32958 Ssbp3-203ENSMUST00000097934 1742 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.83
Rom1P32958 Fcnaos-201ENSMUST00000127642 1351 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Rom1P32958 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC20.26■□□□□ 0.83
Rom1P32958 Zfp91-201ENSMUST00000038627 5531 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Rom1P32958 Rnf220-212ENSMUST00000221654 1949 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Rom1P32958 Tgfbr1-205ENSMUST00000126171 1829 ntTSL 5 BASIC20.25■□□□□ 0.83
Rom1P32958 Raly-201ENSMUST00000029120 1802 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
Rom1P32958 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC20.25■□□□□ 0.83
Rom1P32958 Cldn10-203ENSMUST00000100314 2128 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Rom1P32958 Mef2a-201ENSMUST00000032776 2476 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Rom1P32958 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC20.24■□□□□ 0.83
Rom1P32958 Ino80b-201ENSMUST00000032109 1038 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Rom1P32958 Gsk3a-201ENSMUST00000071739 2260 ntAPPRIS P2 TSL 2 BASIC20.24■□□□□ 0.83
Rom1P32958 Raly-202ENSMUST00000058089 1747 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
Rom1P32958 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Rom1P32958 Prelid3b-201ENSMUST00000016401 1553 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Rom1P32958 Ccz1-201ENSMUST00000031621 1769 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Rom1P32958 Jag2-201ENSMUST00000075827 5106 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Rom1P32958 Hoxa13-203ENSMUST00000147595 2395 ntAPPRIS P5 TSL 5 BASIC20.18■□□□□ 0.82
Rom1P32958 Plekha3-201ENSMUST00000111920 2534 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Rom1P32958 Aes-201ENSMUST00000002518 1411 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Rom1P32958 Mipep-204ENSMUST00000225043 1548 ntBASIC20.17■□□□□ 0.82
Rom1P32958 Hnrnpd-203ENSMUST00000112939 1670 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
Rom1P32958 Ssx2ip-202ENSMUST00000106149 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.82
Rom1P32958 Plin1-206ENSMUST00000205915 2817 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Rom1P32958 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC20.13■□□□□ 0.81
Rom1P32958 Fam168b-201ENSMUST00000047534 5030 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Rom1P32958 Rab21-202ENSMUST00000218831 843 ntBASIC20.12■□□□□ 0.81
Rom1P32958 Uhrf2-202ENSMUST00000112552 1464 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Rom1P32958 Ttc19-202ENSMUST00000101075 2193 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
Rom1P32958 Ildr2-205ENSMUST00000193860 2320 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Rom1P32958 Chrna5-204ENSMUST00000217408 2446 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Rom1P32958 Arhgap22-201ENSMUST00000111955 2148 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
Rom1P32958 Mapk3-202ENSMUST00000057669 1800 ntAPPRIS P2 TSL 1 (best) BASIC20.07■□□□□ 0.8
Rom1P32958 Clk2-203ENSMUST00000121931 2112 ntAPPRIS ALT1 TSL 5 BASIC20.06■□□□□ 0.8
Rom1P32958 Fezf2-202ENSMUST00000224023 1917 ntBASIC20.06■□□□□ 0.8
Rom1P32958 Mbd3-204ENSMUST00000105349 1566 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Rom1P32958 Igfbp3-202ENSMUST00000135887 1709 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Rom1P32958 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC20.04■□□□□ 0.8
Rom1P32958 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC20.04■□□□□ 0.8
Rom1P32958 Tnfsfm13-202ENSMUST00000174159 1470 ntAPPRIS ALT2 TSL 2 BASIC20.03■□□□□ 0.8
Rom1P32958 Gm6345-201ENSMUST00000180378 1691 ntBASIC20.03■□□□□ 0.8
Rom1P32958 Mypop-203ENSMUST00000131087 1951 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
Rom1P32958 Mafa-201ENSMUST00000062002 1080 ntAPPRIS P1 BASIC20.01■□□□□ 0.79
Rom1P32958 Cbln1-201ENSMUST00000034076 2800 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Rom1P32958 4921531C22Rik-201ENSMUST00000150145 1905 ntTSL 1 (best) BASIC20■□□□□ 0.79
Rom1P32958 Mpp6-203ENSMUST00000166318 2222 ntTSL 1 (best) BASIC20■□□□□ 0.79
Rom1P32958 Gm960-202ENSMUST00000177696 2262 ntAPPRIS P2 TSL 5 BASIC19.99■□□□□ 0.79
Rom1P32958 Cetn4-201ENSMUST00000071400 1808 ntTSL 5 BASIC19.98■□□□□ 0.79
Rom1P32958 AL845457.1-201ENSMUST00000197244 68 ntBASIC19.98■□□□□ 0.79
Rom1P32958 Amer2-203ENSMUST00000225247 2662 ntBASIC19.97■□□□□ 0.79
Rom1P32958 Smurf1-201ENSMUST00000085684 5343 ntAPPRIS P4 TSL 1 (best) BASIC19.97■□□□□ 0.79
Rom1P32958 Suds3-202ENSMUST00000166397 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
Rom1P32958 Epb41l4b-203ENSMUST00000095076 6746 ntAPPRIS ALT2 TSL 5 BASIC19.94■□□□□ 0.78
Rom1P32958 Rundc3a-204ENSMUST00000107105 1861 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
Retrieved 100 of 76,532 protein–RNA pairs in 14.1 ms