Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Smurf1-202ENSMUST00000100461 2725 ntAPPRIS ALT1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Cdx1P18111 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Cdx1P18111 Tmem189-201ENSMUST00000006587 2329 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Cdx1P18111 Ryk-201ENSMUST00000035142 2852 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
Cdx1P18111 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC20.59■□□□□ 0.89
Cdx1P18111 Dlg1-203ENSMUST00000100001 4711 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.88
Cdx1P18111 Lemd2-201ENSMUST00000055117 2595 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Cdx1P18111 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Cdx1P18111 Ppp2r2d-201ENSMUST00000041097 2081 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Cdx1P18111 Gm960-204ENSMUST00000225896 2202 ntAPPRIS ALT2 BASIC20.55■□□□□ 0.88
Cdx1P18111 Apcdd1-202ENSMUST00000163716 1888 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Cdx1P18111 Rnf149-201ENSMUST00000062525 2492 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Cdx1P18111 Gpr27-201ENSMUST00000101122 2388 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
Cdx1P18111 9230104M06Rik-201ENSMUST00000180971 1963 ntBASIC20.5■□□□□ 0.87
Cdx1P18111 C530008M17Rik-201ENSMUST00000086909 1844 ntBASIC20.5■□□□□ 0.87
Cdx1P18111 Atoh7-201ENSMUST00000044059 1629 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
Cdx1P18111 Reep6-202ENSMUST00000105354 2208 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
Cdx1P18111 Reep6-205ENSMUST00000105358 2208 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Cdx1P18111 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Cdx1P18111 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC20.48■□□□□ 0.87
Cdx1P18111 Gsk3a-201ENSMUST00000071739 2260 ntAPPRIS P2 TSL 2 BASIC20.48■□□□□ 0.87
Cdx1P18111 Efna3-201ENSMUST00000029673 2363 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
Cdx1P18111 Dazap1-203ENSMUST00000105362 2081 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
Cdx1P18111 Zswim6-201ENSMUST00000105097 5456 ntTSL 5 BASIC20.46■□□□□ 0.87
Cdx1P18111 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
Cdx1P18111 Cldnd1-201ENSMUST00000023426 2147 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Cdx1P18111 Mta3-202ENSMUST00000112349 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
Cdx1P18111 Kdm2a-203ENSMUST00000116571 2413 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
Cdx1P18111 Arhgap22-201ENSMUST00000111955 2148 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
Cdx1P18111 Dyrk1a-202ENSMUST00000119878 5759 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.86
Cdx1P18111 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC20.38■□□□□ 0.85
Cdx1P18111 Ssx2ip-202ENSMUST00000106149 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
Cdx1P18111 Azin2-201ENSMUST00000030581 2063 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Cdx1P18111 Fam220a-205ENSMUST00000169329 2331 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Cdx1P18111 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC20.36■□□□□ 0.85
Cdx1P18111 Rab7-204ENSMUST00000113598 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Cdx1P18111 Arhgdia-201ENSMUST00000067936 2150 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Cdx1P18111 Snx24-202ENSMUST00000165032 1880 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Cdx1P18111 Sh3rf1-201ENSMUST00000034060 5479 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Cdx1P18111 Adgrb1-203ENSMUST00000185682 2744 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Cdx1P18111 Enho-201ENSMUST00000127306 1269 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Cdx1P18111 Dmwd-201ENSMUST00000032570 2494 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
Cdx1P18111 Trabd-203ENSMUST00000165690 1941 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
Cdx1P18111 Clk2-202ENSMUST00000121212 2154 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
Cdx1P18111 Pon2-201ENSMUST00000057792 2409 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Cdx1P18111 Mocs3-201ENSMUST00000099071 1973 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
Cdx1P18111 Gm17082-201ENSMUST00000166043 1091 ntBASIC20.3■□□□□ 0.84
Cdx1P18111 Arl2bp-201ENSMUST00000034228 2063 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Cdx1P18111 Calm3-201ENSMUST00000019514 2290 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Cdx1P18111 Igfbp3-202ENSMUST00000135887 1709 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Cdx1P18111 Hnrnpd-203ENSMUST00000112939 1670 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
Cdx1P18111 Gm6658-202ENSMUST00000209493 1885 ntBASIC20.28■□□□□ 0.84
Cdx1P18111 Arx-202ENSMUST00000113947 2454 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Cdx1P18111 Lrrc4b-201ENSMUST00000058667 2728 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Cdx1P18111 Cnnm3-202ENSMUST00000097776 5292 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Cdx1P18111 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC20.25■□□□□ 0.83
Cdx1P18111 Ppp1r3e-202ENSMUST00000177403 1957 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
Cdx1P18111 Emx1-201ENSMUST00000045942 1561 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Cdx1P18111 Ubtd2-201ENSMUST00000051053 1012 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Cdx1P18111 Kcnq5-206ENSMUST00000173404 2775 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
Cdx1P18111 Noxo1-201ENSMUST00000019464 2238 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Cdx1P18111 Zfp787-201ENSMUST00000094870 1897 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Cdx1P18111 Kansl2-201ENSMUST00000023727 2311 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
Cdx1P18111 Cnnm3-201ENSMUST00000001166 5193 ntAPPRIS P4 TSL 1 (best) BASIC20.19■□□□□ 0.82
Cdx1P18111 Gm27322-201ENSMUST00000184007 104 ntBASIC20.17■□□□□ 0.82
Cdx1P18111 Clec2l-201ENSMUST00000114874 1428 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
Cdx1P18111 Fam220a-206ENSMUST00000196487 2278 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Cdx1P18111 Lpcat4-201ENSMUST00000028554 2275 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Cdx1P18111 Stard10-201ENSMUST00000032927 1400 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Cdx1P18111 Mpp6-203ENSMUST00000166318 2222 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Cdx1P18111 Chrna5-202ENSMUST00000213960 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
Cdx1P18111 Gm43445-201ENSMUST00000198564 2091 ntBASIC20.14■□□□□ 0.81
Cdx1P18111 Agap3-201ENSMUST00000024123 3207 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Cdx1P18111 Tmed7-203ENSMUST00000151189 1348 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Cdx1P18111 Ctbp1-201ENSMUST00000079746 2279 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
Cdx1P18111 Traf4-201ENSMUST00000017530 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Cdx1P18111 Agpat2-201ENSMUST00000028286 1489 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Cdx1P18111 C330011M18Rik-201ENSMUST00000071067 1849 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Cdx1P18111 Jdp2-203ENSMUST00000177587 1645 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Cdx1P18111 Uhrf2-202ENSMUST00000112552 1464 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Cdx1P18111 Ccm2-201ENSMUST00000000388 1858 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Cdx1P18111 Hexdc-201ENSMUST00000038831 2378 ntAPPRIS ALT2 TSL 5 BASIC20.11■□□□□ 0.81
Cdx1P18111 Egln2-201ENSMUST00000080058 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Cdx1P18111 Maz-202ENSMUST00000205461 796 ntTSL 5 BASIC20.09■□□□□ 0.81
Cdx1P18111 Rab40c-209ENSMUST00000179998 2456 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
Cdx1P18111 Tpst1-201ENSMUST00000040721 2050 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Cdx1P18111 Bzw1-202ENSMUST00000186949 1492 ntTSL 5 BASIC20.08■□□□□ 0.81
Cdx1P18111 Nkx1-1-201ENSMUST00000173348 1209 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.81
Cdx1P18111 G6pc3-202ENSMUST00000078975 1573 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Cdx1P18111 Mtch1-201ENSMUST00000095427 1922 ntAPPRIS P3 TSL 1 (best) BASIC20.08■□□□□ 0.8
Cdx1P18111 Atp5a1-202ENSMUST00000114748 2674 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Cdx1P18111 E2f4-201ENSMUST00000015003 1993 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Cdx1P18111 Fam168b-201ENSMUST00000047534 5030 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Cdx1P18111 Gpr12-201ENSMUST00000036211 2219 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Cdx1P18111 Jag2-201ENSMUST00000075827 5106 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Cdx1P18111 Cyp26a1-201ENSMUST00000025946 1773 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Cdx1P18111 Irf2bp2-201ENSMUST00000054960 5080 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
Cdx1P18111 Fezf2-202ENSMUST00000224023 1917 ntBASIC20.03■□□□□ 0.8
Cdx1P18111 Aes-201ENSMUST00000002518 1411 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Cdx1P18111 Mon2-207ENSMUST00000219203 1844 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Retrieved 100 of 76,532 protein–RNA pairs in 8.9 ms