Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 C330011M18Rik-201ENSMUST00000071067 1849 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
Hmgb3O54879 E2f4-201ENSMUST00000015003 1993 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
Hmgb3O54879 Man1a-201ENSMUST00000003843 5137 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
Hmgb3O54879 Zxda-201ENSMUST00000117281 2621 ntBASIC21.37■■□□□ 1.01
Hmgb3O54879 Raly-203ENSMUST00000109701 1709 ntAPPRIS P3 TSL 1 (best) BASIC21.37■■□□□ 1.01
Hmgb3O54879 Lactb-202ENSMUST00000215172 1806 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
Hmgb3O54879 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Hmgb3O54879 Trp53i13-201ENSMUST00000060417 1463 ntAPPRIS P2 TSL 1 (best) BASIC21.35■■□□□ 1.01
Hmgb3O54879 Terf2-203ENSMUST00000116425 2471 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
Hmgb3O54879 Zfp131-207ENSMUST00000224946 1783 ntBASIC21.34■■□□□ 1.01
Hmgb3O54879 Dyrk2-201ENSMUST00000004281 6129 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Hmgb3O54879 Rab7-204ENSMUST00000113598 2031 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Hmgb3O54879 Ccm2-201ENSMUST00000000388 1858 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Hmgb3O54879 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC21.29■■□□□ 1
Hmgb3O54879 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC21.29■■□□□ 1
Hmgb3O54879 Ccdc177-201ENSMUST00000073251 5775 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Hmgb3O54879 Smarcc1-201ENSMUST00000088716 5717 ntAPPRIS P2 TSL 1 (best) BASIC21.28■■□□□ 1
Hmgb3O54879 Dmwd-201ENSMUST00000032570 2494 ntAPPRIS P2 TSL 1 (best) BASIC21.27■■□□□ 1
Hmgb3O54879 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Hmgb3O54879 Cic-202ENSMUST00000163320 6096 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Hmgb3O54879 Cic-201ENSMUST00000005578 6099 ntTSL 5 BASIC21.24■□□□□ 0.99
Hmgb3O54879 Hook1-201ENSMUST00000030306 5517 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Hmgb3O54879 Phlpp1-201ENSMUST00000061047 6226 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Hmgb3O54879 Pds5a-209ENSMUST00000201948 8934 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
Hmgb3O54879 Rbfox2-201ENSMUST00000048145 1720 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Hmgb3O54879 Grin2d-203ENSMUST00000211713 5244 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
Hmgb3O54879 Tlx1-201ENSMUST00000026236 2065 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.99
Hmgb3O54879 Lrrc1-204ENSMUST00000183734 2113 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Hmgb3O54879 Chrna5-202ENSMUST00000213960 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
Hmgb3O54879 Tsc22d1-204ENSMUST00000110888 4999 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Hmgb3O54879 Noxo1-201ENSMUST00000019464 2238 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Hmgb3O54879 C530008M17Rik-201ENSMUST00000086909 1844 ntBASIC21.2■□□□□ 0.98
Hmgb3O54879 Agpat2-201ENSMUST00000028286 1489 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Hmgb3O54879 6330403L08Rik-202ENSMUST00000187923 5522 ntBASIC21.16■□□□□ 0.98
Hmgb3O54879 Slc30a1-201ENSMUST00000044954 5244 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Hmgb3O54879 Fam117a-201ENSMUST00000037502 2317 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Hmgb3O54879 Fkbp8-204ENSMUST00000119698 1799 ntAPPRIS P4 TSL 1 (best) BASIC21.14■□□□□ 0.97
Hmgb3O54879 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Hmgb3O54879 Phf2-201ENSMUST00000035540 5494 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Hmgb3O54879 Tmem59-201ENSMUST00000030361 1775 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Hmgb3O54879 Apcdd1-202ENSMUST00000163716 1888 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Hmgb3O54879 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC21.12■□□□□ 0.97
Hmgb3O54879 Pwwp2a-202ENSMUST00000094294 1814 ntTSL 5 BASIC21.12■□□□□ 0.97
Hmgb3O54879 Cdc42bpb-201ENSMUST00000041965 6714 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Hmgb3O54879 Hexdc-202ENSMUST00000106117 2149 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
Hmgb3O54879 Galnt12-201ENSMUST00000045041 2288 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Hmgb3O54879 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC21.1■□□□□ 0.97
Hmgb3O54879 Klhdc10-202ENSMUST00000068259 5901 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Hmgb3O54879 Ildr2-207ENSMUST00000195557 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
Hmgb3O54879 Dazap1-203ENSMUST00000105362 2081 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.97
Hmgb3O54879 Gm6206-201ENSMUST00000133472 2199 ntBASIC21.08■□□□□ 0.97
Hmgb3O54879 Gm25238-201ENSMUST00000174914 89 ntBASIC21.08■□□□□ 0.97
Hmgb3O54879 Nucks1-203ENSMUST00000189946 2375 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.96
Hmgb3O54879 Tpm1-216ENSMUST00000113707 1898 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Hmgb3O54879 Cyp26a1-201ENSMUST00000025946 1773 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Hmgb3O54879 Mtch1-201ENSMUST00000095427 1922 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
Hmgb3O54879 Tpst1-201ENSMUST00000040721 2050 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Hmgb3O54879 Kcnc3-201ENSMUST00000107906 5062 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
Hmgb3O54879 Mef2a-201ENSMUST00000032776 2476 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Hmgb3O54879 Traf4-201ENSMUST00000017530 2078 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Hmgb3O54879 Bzw1-202ENSMUST00000186949 1492 ntTSL 5 BASIC21.03■□□□□ 0.96
Hmgb3O54879 Ebf4-203ENSMUST00000110288 2982 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
Hmgb3O54879 Gm9905-201ENSMUST00000065740 1845 ntBASIC21.02■□□□□ 0.96
Hmgb3O54879 Pfn2-202ENSMUST00000119344 1879 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
Hmgb3O54879 Rmnd5a-201ENSMUST00000002292 6165 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Hmgb3O54879 Lgi2-201ENSMUST00000039750 6456 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
Hmgb3O54879 Heca-201ENSMUST00000037879 5098 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Hmgb3O54879 Bod1-201ENSMUST00000058060 1394 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Hmgb3O54879 Carnmt1-201ENSMUST00000025632 2090 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Hmgb3O54879 Cacna2d2-205ENSMUST00000168532 5807 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
Hmgb3O54879 Ric1-206ENSMUST00000162184 2157 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
Hmgb3O54879 Grin2d-201ENSMUST00000002848 5431 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Hmgb3O54879 Micu3-201ENSMUST00000068999 2219 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
Hmgb3O54879 Casp9-202ENSMUST00000097805 1498 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Hmgb3O54879 Pou3f3-201ENSMUST00000054883 7409 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
Hmgb3O54879 Tmem189-201ENSMUST00000006587 2329 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Hmgb3O54879 Sptbn4-207ENSMUST00000172269 8737 ntAPPRIS ALT2 TSL 2 BASIC20.92■□□□□ 0.94
Hmgb3O54879 Cbln1-201ENSMUST00000034076 2800 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Hmgb3O54879 Yy1-201ENSMUST00000021692 6178 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Hmgb3O54879 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC20.91■□□□□ 0.94
Hmgb3O54879 Lactb-201ENSMUST00000034929 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Hmgb3O54879 Ppp1r3e-202ENSMUST00000177403 1957 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
Hmgb3O54879 Rab2a-201ENSMUST00000060232 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
Hmgb3O54879 Fam193a-202ENSMUST00000180376 5536 ntAPPRIS P5 TSL 5 BASIC20.88■□□□□ 0.93
Hmgb3O54879 Nrep-202ENSMUST00000168890 2185 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Hmgb3O54879 Rtn2-201ENSMUST00000032559 1990 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
Hmgb3O54879 En1-201ENSMUST00000079721 2624 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Hmgb3O54879 Ksr1-201ENSMUST00000018478 5495 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
Hmgb3O54879 Plekha3-201ENSMUST00000111920 2534 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Hmgb3O54879 Gm45716-202ENSMUST00000134929 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Hmgb3O54879 Ppp1r14c-202ENSMUST00000217573 2013 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Hmgb3O54879 Maf-201ENSMUST00000069009 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
Hmgb3O54879 Zcchc14-201ENSMUST00000046386 7444 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Hmgb3O54879 Raly-204ENSMUST00000116389 1759 ntAPPRIS ALT2 TSL 5 BASIC20.84■□□□□ 0.93
Hmgb3O54879 Gsk3a-201ENSMUST00000071739 2260 ntAPPRIS P2 TSL 2 BASIC20.84■□□□□ 0.93
Hmgb3O54879 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC20.83■□□□□ 0.93
Hmgb3O54879 Nectin3-203ENSMUST00000096052 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.92
Hmgb3O54879 Gltp-201ENSMUST00000012028 1762 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Hmgb3O54879 Arhgef26-201ENSMUST00000079300 5638 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Hmgb3O54879 Cldnd1-201ENSMUST00000023426 2147 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Retrieved 100 of 76,532 protein–RNA pairs in 14.1 ms