Protein–RNA interactions for Protein: A0A0B4J1K1

Trav4-3, T cell receptor alpha variable 4-3 (Fragment), mousemouse

Predictions only

Length 110 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav4-3A0A0B4J1K1 Cldn10-203ENSMUST00000100314 2128 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Trav4-3A0A0B4J1K1 Carnmt1-201ENSMUST00000025632 2090 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Trav4-3A0A0B4J1K1 Casp9-202ENSMUST00000097805 1498 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Trav4-3A0A0B4J1K1 Ildr2-207ENSMUST00000195557 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trav4-3A0A0B4J1K1 Pwwp2a-202ENSMUST00000094294 1814 ntTSL 5 BASIC17.72■□□□□ 0.43
Trav4-3A0A0B4J1K1 Pfn2-202ENSMUST00000119344 1879 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Trav4-3A0A0B4J1K1 Zfp91-201ENSMUST00000038627 5531 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Trav4-3A0A0B4J1K1 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Trav4-3A0A0B4J1K1 Tmem189-201ENSMUST00000006587 2329 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Trav4-3A0A0B4J1K1 Traf4-201ENSMUST00000017530 2078 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trav4-3A0A0B4J1K1 Tpst1-201ENSMUST00000040721 2050 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trav4-3A0A0B4J1K1 Fam168b-201ENSMUST00000047534 5030 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trav4-3A0A0B4J1K1 Micu3-201ENSMUST00000068999 2219 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
Trav4-3A0A0B4J1K1 Gm27325-201ENSMUST00000175467 74 ntBASIC17.66■□□□□ 0.42
Trav4-3A0A0B4J1K1 Zfp787-201ENSMUST00000094870 1897 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trav4-3A0A0B4J1K1 Galnt10-202ENSMUST00000108846 1745 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Trav4-3A0A0B4J1K1 Arl2bp-201ENSMUST00000034228 2063 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trav4-3A0A0B4J1K1 Gm43445-201ENSMUST00000198564 2091 ntBASIC17.64■□□□□ 0.41
Trav4-3A0A0B4J1K1 Plekha3-201ENSMUST00000111920 2534 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Trav4-3A0A0B4J1K1 Kdm2a-203ENSMUST00000116571 2413 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Trav4-3A0A0B4J1K1 Ctbp1-201ENSMUST00000079746 2279 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
Trav4-3A0A0B4J1K1 Bzw1-202ENSMUST00000186949 1492 ntTSL 5 BASIC17.62■□□□□ 0.41
Trav4-3A0A0B4J1K1 Agpat2-201ENSMUST00000028286 1489 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Trav4-3A0A0B4J1K1 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Trav4-3A0A0B4J1K1 Ywhah-201ENSMUST00000019109 1764 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Trav4-3A0A0B4J1K1 Gsk3a-201ENSMUST00000071739 2260 ntAPPRIS P2 TSL 2 BASIC17.61■□□□□ 0.41
Trav4-3A0A0B4J1K1 Hoxa13-203ENSMUST00000147595 2395 ntAPPRIS P5 TSL 5 BASIC17.61■□□□□ 0.41
Trav4-3A0A0B4J1K1 Fcho2-203ENSMUST00000109403 1523 ntTSL 5 BASIC17.6■□□□□ 0.41
Trav4-3A0A0B4J1K1 Lactb-201ENSMUST00000034929 2031 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Trav4-3A0A0B4J1K1 Gm45716-202ENSMUST00000134929 2031 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trav4-3A0A0B4J1K1 Rragc-201ENSMUST00000030399 2593 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Trav4-3A0A0B4J1K1 Pfdn2-202ENSMUST00000135941 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Trav4-3A0A0B4J1K1 Epb41l4b-203ENSMUST00000095076 6746 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
Trav4-3A0A0B4J1K1 Smad7-202ENSMUST00000168918 1882 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Trav4-3A0A0B4J1K1 Raly-204ENSMUST00000116389 1759 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
Trav4-3A0A0B4J1K1 Ebag9-203ENSMUST00000227691 1945 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
Trav4-3A0A0B4J1K1 Ssx2ip-202ENSMUST00000106149 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
Trav4-3A0A0B4J1K1 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC17.52■□□□□ 0.4
Trav4-3A0A0B4J1K1 Igfbp3-202ENSMUST00000135887 1709 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Trav4-3A0A0B4J1K1 Phf10-201ENSMUST00000024657 1663 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Trav4-3A0A0B4J1K1 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Trav4-3A0A0B4J1K1 Nectin3-203ENSMUST00000096052 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
Trav4-3A0A0B4J1K1 Arhgap22-201ENSMUST00000111955 2148 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Trav4-3A0A0B4J1K1 Rnf220-212ENSMUST00000221654 1949 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Trav4-3A0A0B4J1K1 Cbln1-201ENSMUST00000034076 2800 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Trav4-3A0A0B4J1K1 Ric1-206ENSMUST00000162184 2157 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Trav4-3A0A0B4J1K1 Raly-201ENSMUST00000029120 1802 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
Trav4-3A0A0B4J1K1 Smurf1-201ENSMUST00000085684 5343 ntAPPRIS P4 TSL 1 (best) BASIC17.47■□□□□ 0.39
Trav4-3A0A0B4J1K1 Gltp-201ENSMUST00000012028 1762 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Trav4-3A0A0B4J1K1 Fezf2-202ENSMUST00000224023 1917 ntBASIC17.45■□□□□ 0.38
Trav4-3A0A0B4J1K1 Fkbp8-204ENSMUST00000119698 1799 ntAPPRIS P4 TSL 1 (best) BASIC17.43■□□□□ 0.38
Trav4-3A0A0B4J1K1 Gm960-202ENSMUST00000177696 2262 ntAPPRIS P2 TSL 5 BASIC17.43■□□□□ 0.38
Trav4-3A0A0B4J1K1 Ring1-201ENSMUST00000025183 2034 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Trav4-3A0A0B4J1K1 Reep6-202ENSMUST00000105354 2208 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
Trav4-3A0A0B4J1K1 Reep6-205ENSMUST00000105358 2208 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Trav4-3A0A0B4J1K1 Ildr2-205ENSMUST00000193860 2320 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Trav4-3A0A0B4J1K1 Tspan3-201ENSMUST00000034876 1716 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Trav4-3A0A0B4J1K1 Amigo1-201ENSMUST00000050909 5030 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Trav4-3A0A0B4J1K1 Ttc19-202ENSMUST00000101075 2193 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
Trav4-3A0A0B4J1K1 Slc25a28-201ENSMUST00000046038 1514 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trav4-3A0A0B4J1K1 Rhobtb3-202ENSMUST00000109606 1676 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Trav4-3A0A0B4J1K1 Mypop-203ENSMUST00000131087 1951 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
Trav4-3A0A0B4J1K1 Clk2-203ENSMUST00000121931 2112 ntAPPRIS ALT1 TSL 5 BASIC17.37■□□□□ 0.37
Trav4-3A0A0B4J1K1 Fcnaos-201ENSMUST00000127642 1351 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Trav4-3A0A0B4J1K1 Lemd2-201ENSMUST00000055117 2595 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Trav4-3A0A0B4J1K1 Agap3-206ENSMUST00000212381 1191 ntTSL 5 BASIC17.35■□□□□ 0.37
Trav4-3A0A0B4J1K1 Bin1-202ENSMUST00000091967 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Trav4-3A0A0B4J1K1 Bod1-201ENSMUST00000058060 1394 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Trav4-3A0A0B4J1K1 Xkr7-201ENSMUST00000037235 2711 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Trav4-3A0A0B4J1K1 Mast2-203ENSMUST00000106485 5705 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Trav4-3A0A0B4J1K1 Mast2-204ENSMUST00000106486 5723 ntAPPRIS P4 TSL 1 (best) BASIC17.32■□□□□ 0.36
Trav4-3A0A0B4J1K1 Amer2-203ENSMUST00000225247 2662 ntBASIC17.31■□□□□ 0.36
Trav4-3A0A0B4J1K1 Mpp6-203ENSMUST00000166318 2222 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Trav4-3A0A0B4J1K1 Zswim5-201ENSMUST00000044823 5582 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trav4-3A0A0B4J1K1 Maz-201ENSMUST00000032916 2347 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Trav4-3A0A0B4J1K1 Znrf2-201ENSMUST00000079869 5886 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trav4-3A0A0B4J1K1 Tgfbr1-205ENSMUST00000126171 1829 ntTSL 5 BASIC17.3■□□□□ 0.36
Trav4-3A0A0B4J1K1 Raly-202ENSMUST00000058089 1747 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trav4-3A0A0B4J1K1 Shf-201ENSMUST00000048635 1431 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trav4-3A0A0B4J1K1 4921531C22Rik-201ENSMUST00000150145 1905 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Trav4-3A0A0B4J1K1 2410017I17Rik-202ENSMUST00000090537 2053 ntTSL 2 BASIC17.28■□□□□ 0.36
Trav4-3A0A0B4J1K1 Marveld2-202ENSMUST00000163163 2187 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Trav4-3A0A0B4J1K1 Ssbp3-203ENSMUST00000097934 1742 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.35
Trav4-3A0A0B4J1K1 Suds3-202ENSMUST00000166397 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trav4-3A0A0B4J1K1 Ccz1-201ENSMUST00000031621 1769 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trav4-3A0A0B4J1K1 Dennd5a-202ENSMUST00000106722 4862 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Trav4-3A0A0B4J1K1 Cetn4-201ENSMUST00000071400 1808 ntTSL 5 BASIC17.25■□□□□ 0.35
Trav4-3A0A0B4J1K1 Zfp513-202ENSMUST00000114590 2228 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trav4-3A0A0B4J1K1 Hdgf-201ENSMUST00000005017 2245 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trav4-3A0A0B4J1K1 Heca-201ENSMUST00000037879 5098 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Trav4-3A0A0B4J1K1 Ebf4-203ENSMUST00000110288 2982 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
Trav4-3A0A0B4J1K1 Prelid3b-201ENSMUST00000016401 1553 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Trav4-3A0A0B4J1K1 Terf2-201ENSMUST00000068388 1915 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Trav4-3A0A0B4J1K1 Ube2q2-202ENSMUST00000121677 1680 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
Trav4-3A0A0B4J1K1 Rgs7-206ENSMUST00000194555 2431 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Trav4-3A0A0B4J1K1 Gpr27-201ENSMUST00000101122 2388 ntAPPRIS P1 BASIC17.21■□□□□ 0.34
Trav4-3A0A0B4J1K1 Arhgdia-201ENSMUST00000067936 2150 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
Trav4-3A0A0B4J1K1 Gsk3a-202ENSMUST00000108411 2248 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
Trav4-3A0A0B4J1K1 Ubp1-203ENSMUST00000116492 2111 ntAPPRIS ALT1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trav4-3A0A0B4J1K1 Klhl25-205ENSMUST00000206019 2299 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Retrieved 100 of 76,532 protein–RNA pairs in 15.5 ms