Protein–RNA interactions for Protein: A0A0B4J1J9

Trav11, T cell receptor alpha variable 11 (Fragment), mousemouse

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav11A0A0B4J1J9 Mogs-201ENSMUST00000032114 2780 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trav11A0A0B4J1J9 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC17.66■□□□□ 0.42
Trav11A0A0B4J1J9 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trav11A0A0B4J1J9 Terf2-203ENSMUST00000116425 2471 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Trav11A0A0B4J1J9 Adap1-201ENSMUST00000110865 2557 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
Trav11A0A0B4J1J9 Noxo1-201ENSMUST00000019464 2238 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trav11A0A0B4J1J9 Rab21-202ENSMUST00000218831 843 ntBASIC17.65■□□□□ 0.42
Trav11A0A0B4J1J9 Cyp26a1-201ENSMUST00000025946 1773 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trav11A0A0B4J1J9 Dmwd-201ENSMUST00000032570 2494 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.42
Trav11A0A0B4J1J9 Mtch1-201ENSMUST00000095427 1922 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
Trav11A0A0B4J1J9 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC17.62■□□□□ 0.41
Trav11A0A0B4J1J9 Nucks1-203ENSMUST00000189946 2375 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
Trav11A0A0B4J1J9 Pfn2-202ENSMUST00000119344 1879 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Trav11A0A0B4J1J9 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Trav11A0A0B4J1J9 Uhrf2-202ENSMUST00000112552 1464 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Trav11A0A0B4J1J9 Hexdc-202ENSMUST00000106117 2149 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Trav11A0A0B4J1J9 Hnrnpd-203ENSMUST00000112939 1670 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.41
Trav11A0A0B4J1J9 Zfp131-206ENSMUST00000223813 2561 ntAPPRIS P3 BASIC17.58■□□□□ 0.4
Trav11A0A0B4J1J9 Rragc-201ENSMUST00000030399 2593 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Trav11A0A0B4J1J9 Ube2q2-202ENSMUST00000121677 1680 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.4
Trav11A0A0B4J1J9 Chrna5-204ENSMUST00000217408 2446 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
Trav11A0A0B4J1J9 Dazap1-203ENSMUST00000105362 2081 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
Trav11A0A0B4J1J9 Aes-201ENSMUST00000002518 1411 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Trav11A0A0B4J1J9 Galnt12-201ENSMUST00000045041 2288 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Trav11A0A0B4J1J9 Zfp91-201ENSMUST00000038627 5531 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Trav11A0A0B4J1J9 Slc25a28-201ENSMUST00000046038 1514 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Trav11A0A0B4J1J9 Rtn2-201ENSMUST00000032559 1990 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
Trav11A0A0B4J1J9 Epb41l4b-203ENSMUST00000095076 6746 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
Trav11A0A0B4J1J9 Lactb-201ENSMUST00000034929 2031 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Trav11A0A0B4J1J9 Gltp-201ENSMUST00000012028 1762 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Trav11A0A0B4J1J9 Nectin3-203ENSMUST00000096052 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Trav11A0A0B4J1J9 Tpst1-201ENSMUST00000040721 2050 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Trav11A0A0B4J1J9 Gm9905-201ENSMUST00000065740 1845 ntBASIC17.52■□□□□ 0.4
Trav11A0A0B4J1J9 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC17.52■□□□□ 0.4
Trav11A0A0B4J1J9 Raly-204ENSMUST00000116389 1759 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
Trav11A0A0B4J1J9 Ssbp3-203ENSMUST00000097934 1742 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
Trav11A0A0B4J1J9 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC17.5■□□□□ 0.39
Trav11A0A0B4J1J9 Traf4-201ENSMUST00000017530 2078 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Trav11A0A0B4J1J9 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
Trav11A0A0B4J1J9 Gm6206-201ENSMUST00000133472 2199 ntBASIC17.49■□□□□ 0.39
Trav11A0A0B4J1J9 Nrep-202ENSMUST00000168890 2185 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Trav11A0A0B4J1J9 Fam168b-201ENSMUST00000047534 5030 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Trav11A0A0B4J1J9 Shf-201ENSMUST00000048635 1431 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
Trav11A0A0B4J1J9 Tspan3-201ENSMUST00000034876 1716 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Trav11A0A0B4J1J9 Mbd3-204ENSMUST00000105349 1566 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Trav11A0A0B4J1J9 Gm45716-202ENSMUST00000134929 2031 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Trav11A0A0B4J1J9 Ric1-206ENSMUST00000162184 2157 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Trav11A0A0B4J1J9 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Trav11A0A0B4J1J9 Ppp1r3e-202ENSMUST00000177403 1957 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
Trav11A0A0B4J1J9 Mipep-204ENSMUST00000225043 1548 ntBASIC17.44■□□□□ 0.38
Trav11A0A0B4J1J9 Fam120a-201ENSMUST00000060805 5105 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Trav11A0A0B4J1J9 Ywhah-201ENSMUST00000019109 1764 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Trav11A0A0B4J1J9 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Trav11A0A0B4J1J9 Fcho2-203ENSMUST00000109403 1523 ntTSL 5 BASIC17.42■□□□□ 0.38
Trav11A0A0B4J1J9 Heca-201ENSMUST00000037879 5098 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Trav11A0A0B4J1J9 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Trav11A0A0B4J1J9 Xkr7-201ENSMUST00000037235 2711 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Trav11A0A0B4J1J9 Ebag9-203ENSMUST00000227691 1945 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
Trav11A0A0B4J1J9 Micu3-201ENSMUST00000068999 2219 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
Trav11A0A0B4J1J9 Ring1-201ENSMUST00000025183 2034 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Trav11A0A0B4J1J9 Galnt10-202ENSMUST00000108846 1745 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Trav11A0A0B4J1J9 En1-201ENSMUST00000079721 2624 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trav11A0A0B4J1J9 AL845457.1-201ENSMUST00000197244 68 ntBASIC17.38■□□□□ 0.37
Trav11A0A0B4J1J9 Phf10-201ENSMUST00000024657 1663 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trav11A0A0B4J1J9 Mef2a-201ENSMUST00000032776 2476 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Trav11A0A0B4J1J9 Smad7-202ENSMUST00000168918 1882 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Trav11A0A0B4J1J9 Prelid3b-201ENSMUST00000016401 1553 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Trav11A0A0B4J1J9 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC17.37■□□□□ 0.37
Trav11A0A0B4J1J9 Ebf4-203ENSMUST00000110288 2982 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
Trav11A0A0B4J1J9 Cldnd1-201ENSMUST00000023426 2147 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Trav11A0A0B4J1J9 Mafa-201ENSMUST00000062002 1080 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
Trav11A0A0B4J1J9 Rhobtb3-202ENSMUST00000109606 1676 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Trav11A0A0B4J1J9 Tgfbr1-205ENSMUST00000126171 1829 ntTSL 5 BASIC17.35■□□□□ 0.37
Trav11A0A0B4J1J9 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Trav11A0A0B4J1J9 Ino80b-201ENSMUST00000032109 1038 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
Trav11A0A0B4J1J9 Tmem189-201ENSMUST00000006587 2329 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Trav11A0A0B4J1J9 Rab2a-201ENSMUST00000060232 2133 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Trav11A0A0B4J1J9 Mapk3-202ENSMUST00000057669 1800 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
Trav11A0A0B4J1J9 Ctbp1-201ENSMUST00000079746 2279 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
Trav11A0A0B4J1J9 Gm43445-201ENSMUST00000198564 2091 ntBASIC17.32■□□□□ 0.36
Trav11A0A0B4J1J9 Ccz1-201ENSMUST00000031621 1769 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trav11A0A0B4J1J9 Raly-202ENSMUST00000058089 1747 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trav11A0A0B4J1J9 Hoxa13-203ENSMUST00000147595 2395 ntAPPRIS P5 TSL 5 BASIC17.29■□□□□ 0.36
Trav11A0A0B4J1J9 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
Trav11A0A0B4J1J9 Htra4-201ENSMUST00000084031 2180 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Trav11A0A0B4J1J9 Dennd5a-202ENSMUST00000106722 4862 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
Trav11A0A0B4J1J9 Raly-201ENSMUST00000029120 1802 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
Trav11A0A0B4J1J9 Gsk3a-201ENSMUST00000071739 2260 ntAPPRIS P2 TSL 2 BASIC17.26■□□□□ 0.35
Trav11A0A0B4J1J9 Rnf220-212ENSMUST00000221654 1949 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Trav11A0A0B4J1J9 Ppp1r14c-202ENSMUST00000217573 2013 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Trav11A0A0B4J1J9 Zfp787-201ENSMUST00000094870 1897 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Trav11A0A0B4J1J9 Ttc19-202ENSMUST00000101075 2193 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Trav11A0A0B4J1J9 Kdm2a-203ENSMUST00000116571 2413 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Trav11A0A0B4J1J9 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Trav11A0A0B4J1J9 Arl2bp-201ENSMUST00000034228 2063 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Trav11A0A0B4J1J9 Znrf2-201ENSMUST00000079869 5886 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Trav11A0A0B4J1J9 Pfdn2-202ENSMUST00000135941 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Trav11A0A0B4J1J9 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Trav11A0A0B4J1J9 Ildr2-205ENSMUST00000193860 2320 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Trav11A0A0B4J1J9 Ilk-201ENSMUST00000033182 1795 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Retrieved 100 of 76,532 protein–RNA pairs in 13.9 ms