Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 RIMS1-201ENST00000264839 7055 ntTSL 5 BASIC11.74□□□□□ -0.53
PDLIM3Q53GG5 RAVER1-206ENST00000611074 3586 ntAPPRIS P2 TSL 5 BASIC11.74□□□□□ -0.53
PDLIM3Q53GG5 C1QTNF9-201ENST00000332018 1830 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
PDLIM3Q53GG5 HOXA3-201ENST00000317201 2761 ntAPPRIS P1 TSL 5 BASIC11.74□□□□□ -0.53
PDLIM3Q53GG5 SLC6A6P1-201ENST00000413933 1850 ntBASIC11.74□□□□□ -0.53
PDLIM3Q53GG5 MFSD2B-201ENST00000338315 2850 ntAPPRIS ALT2 TSL 5 BASIC11.74□□□□□ -0.53
PDLIM3Q53GG5 TMUB2-202ENST00000357984 1921 ntAPPRIS P3 TSL 1 (best) BASIC11.74□□□□□ -0.53
PDLIM3Q53GG5 BCORL1-201ENST00000218147 6860 ntAPPRIS P1 TSL 5 BASIC11.74□□□□□ -0.53
PDLIM3Q53GG5 RAB40A-201ENST00000304236 1969 ntAPPRIS P1 TSL 2 BASIC11.74□□□□□ -0.53
PDLIM3Q53GG5 SH3BP2-203ENST00000442312 9211 ntAPPRIS ALT2 TSL 2 BASIC11.74□□□□□ -0.53
PDLIM3Q53GG5 ARSD-202ENST00000381154 5159 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
PDLIM3Q53GG5 CARD10-203ENST00000406271 3127 ntTSL 2 BASIC11.74□□□□□ -0.53
PDLIM3Q53GG5 CACNA2D2-205ENST00000429770 5304 ntAPPRIS ALT2 TSL 5 BASIC11.74□□□□□ -0.53
PDLIM3Q53GG5 LRPAP1-202ENST00000500728 7819 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
PDLIM3Q53GG5 CSNK1G3-201ENST00000345990 4635 ntAPPRIS ALT2 TSL 1 (best) BASIC11.74□□□□□ -0.53
PDLIM3Q53GG5 TLE3-211ENST00000557997 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC11.74□□□□□ -0.53
PDLIM3Q53GG5 DIAPH2-202ENST00000355827 3782 ntAPPRIS ALT2 TSL 5 BASIC11.74□□□□□ -0.53
PDLIM3Q53GG5 ANGPTL8-201ENST00000252453 872 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
PDLIM3Q53GG5 GAL-201ENST00000265643 818 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
PDLIM3Q53GG5 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
PDLIM3Q53GG5 SDCCAG3P2-201ENST00000326105 1023 ntBASIC11.74□□□□□ -0.53
PDLIM3Q53GG5 CNR1-201ENST00000362094 1252 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
PDLIM3Q53GG5 DUSP23-202ENST00000368108 694 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
PDLIM3Q53GG5 FAM177A1-202ENST00000382406 858 ntAPPRIS ALT2 TSL 1 (best) BASIC11.74□□□□□ -0.53
PDLIM3Q53GG5 NAPB-202ENST00000398425 3824 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
PDLIM3Q53GG5 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC11.74□□□□□ -0.53
PDLIM3Q53GG5 GSTK1-202ENST00000409500 888 ntTSL 2 BASIC11.74□□□□□ -0.53
PDLIM3Q53GG5 AC099552.2-201ENST00000418523 456 ntTSL 3 BASIC11.74□□□□□ -0.53
PDLIM3Q53GG5 AC097065.1-201ENST00000425737 517 ntBASIC11.74□□□□□ -0.53
PDLIM3Q53GG5 FAM197Y7-201ENST00000432892 766 ntBASIC11.74□□□□□ -0.53
PDLIM3Q53GG5 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC11.74□□□□□ -0.53
PDLIM3Q53GG5 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC11.74□□□□□ -0.53
PDLIM3Q53GG5 RAMP3-202ENST00000481345 559 ntAPPRIS P2 TSL 4 BASIC11.74□□□□□ -0.53
PDLIM3Q53GG5 AC022137.2-201ENST00000503482 481 ntBASIC11.74□□□□□ -0.53
PDLIM3Q53GG5 AC078819.1-201ENST00000547454 765 ntBASIC11.74□□□□□ -0.53
PDLIM3Q53GG5 AC012085.1-201ENST00000548270 765 ntBASIC11.74□□□□□ -0.53
PDLIM3Q53GG5 AC092139.2-201ENST00000563750 754 ntTSL 3 BASIC11.74□□□□□ -0.53
PDLIM3Q53GG5 DMAC2-208ENST00000589970 979 ntTSL 2 BASIC11.74□□□□□ -0.53
PDLIM3Q53GG5 DMAC2-215ENST00000597457 492 ntTSL 5 BASIC11.74□□□□□ -0.53
PDLIM3Q53GG5 CLEC11A-202ENST00000599973 1026 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
PDLIM3Q53GG5 MVK-217ENST00000639206 367 ntTSL 5 BASIC11.74□□□□□ -0.53
PDLIM3Q53GG5 CLUHP2-201ENST00000426660 1303 ntBASIC11.74□□□□□ -0.53
PDLIM3Q53GG5 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC11.74□□□□□ -0.53
PDLIM3Q53GG5 PBX3-201ENST00000342287 2755 ntAPPRIS ALT1 TSL 5 BASIC11.74□□□□□ -0.53
PDLIM3Q53GG5 ICOSLG-203ENST00000400379 4246 ntAPPRIS ALT2 TSL 1 (best) BASIC11.74□□□□□ -0.53
PDLIM3Q53GG5 ACSM2A-209ENST00000573854 2837 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
PDLIM3Q53GG5 CARHSP1-220ENST00000619881 2849 ntAPPRIS P1 TSL 3 BASIC11.74□□□□□ -0.53
PDLIM3Q53GG5 AC138894.1-201ENST00000635887 2824 ntTSL 5 BASIC11.74□□□□□ -0.53
PDLIM3Q53GG5 PRG2-201ENST00000311862 1424 ntAPPRIS P3 TSL 1 (best) BASIC11.74□□□□□ -0.53
PDLIM3Q53GG5 ACOT7-203ENST00000377845 1432 ntAPPRIS ALT2 TSL 1 (best) BASIC11.74□□□□□ -0.53
PDLIM3Q53GG5 AC068888.1-207ENST00000546793 2863 ntTSL 2 BASIC11.74□□□□□ -0.53
PDLIM3Q53GG5 ZDHHC8-203ENST00000405930 3112 ntTSL 2 BASIC11.74□□□□□ -0.53
PDLIM3Q53GG5 PTPRN2-203ENST00000389418 4706 ntAPPRIS P4 TSL 1 (best) BASIC11.74□□□□□ -0.53
PDLIM3Q53GG5 ARFGAP1-212ENST00000519604 3191 ntTSL 2 BASIC11.74□□□□□ -0.53
PDLIM3Q53GG5 TK1-201ENST00000301634 1628 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
PDLIM3Q53GG5 AP1G2-201ENST00000308724 3298 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
PDLIM3Q53GG5 SIGLEC9-201ENST00000250360 1690 ntAPPRIS P3 TSL 1 (best) BASIC11.74□□□□□ -0.53
PDLIM3Q53GG5 AC239799.1-201ENST00000612520 3411 ntAPPRIS P1 TSL 5 BASIC11.74□□□□□ -0.53
PDLIM3Q53GG5 KRT36-202ENST00000393986 1707 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
PDLIM3Q53GG5 TNFRSF11A-201ENST00000269485 3591 ntAPPRIS ALT2 TSL 1 (best) BASIC11.74□□□□□ -0.53
PDLIM3Q53GG5 FGFR1-211ENST00000425967 5375 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
PDLIM3Q53GG5 ARMC5-201ENST00000268314 3612 ntAPPRIS ALT2 TSL 5 BASIC11.74□□□□□ -0.53
PDLIM3Q53GG5 PDYN-AS1-201ENST00000446562 1802 ntTSL 2 BASIC11.74□□□□□ -0.53
PDLIM3Q53GG5 C1orf228-218ENST00000458657 1818 ntAPPRIS P2 TSL 5 BASIC11.74□□□□□ -0.53
PDLIM3Q53GG5 RHOH-218ENST00000613272 1865 ntAPPRIS P1 TSL 3 BASIC11.74□□□□□ -0.53
PDLIM3Q53GG5 C7orf72-201ENST00000297001 2028 ntAPPRIS P1 TSL 5 BASIC11.74□□□□□ -0.53
PDLIM3Q53GG5 GRAMD4-201ENST00000361034 4315 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
PDLIM3Q53GG5 SLC9A3P3-201ENST00000457608 2229 ntBASIC11.74□□□□□ -0.53
PDLIM3Q53GG5 TSPEAR-AS2-202ENST00000354333 2422 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
PDLIM3Q53GG5 HBP1-212ENST00000485846 2420 ntAPPRIS P1 TSL 2 BASIC11.74□□□□□ -0.53
PDLIM3Q53GG5 METTL13-203ENST00000367737 2865 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
PDLIM3Q53GG5 ASH2L-201ENST00000343823 3090 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
PDLIM3Q53GG5 ZCCHC14-201ENST00000268616 7102 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
PDLIM3Q53GG5 GRIN1-207ENST00000371560 3640 ntAPPRIS ALT1 TSL 1 (best) BASIC11.73□□□□□ -0.53
PDLIM3Q53GG5 IL13RA1-202ENST00000371666 4036 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
PDLIM3Q53GG5 GATC-203ENST00000551765 4244 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
PDLIM3Q53GG5 AC239809.3-201ENST00000599640 4266 ntTSL 5 BASIC11.73□□□□□ -0.53
PDLIM3Q53GG5 PIAS2-201ENST00000324794 4543 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
PDLIM3Q53GG5 MTMR2-201ENST00000346299 4681 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
PDLIM3Q53GG5 MTMR2-203ENST00000393223 4681 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
PDLIM3Q53GG5 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC11.73□□□□□ -0.53
PDLIM3Q53GG5 IL1RN-201ENST00000259206 1810 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
PDLIM3Q53GG5 SCARF1-201ENST00000263071 3443 ntAPPRIS P3 TSL 1 (best) BASIC11.73□□□□□ -0.53
PDLIM3Q53GG5 NLRX1-201ENST00000292199 3744 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
PDLIM3Q53GG5 SLC6A19-201ENST00000304460 5174 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
PDLIM3Q53GG5 KLK11-201ENST00000319720 1198 ntAPPRIS ALT2 TSL 1 (best) BASIC11.73□□□□□ -0.53
PDLIM3Q53GG5 FCRL6-201ENST00000321935 1997 ntAPPRIS ALT2 TSL 2 BASIC11.73□□□□□ -0.53
PDLIM3Q53GG5 ODF4-201ENST00000328248 1156 ntAPPRIS P3 TSL 1 (best) BASIC11.73□□□□□ -0.53
PDLIM3Q53GG5 FXYD3-202ENST00000346446 1320 ntTSL 2 BASIC11.73□□□□□ -0.53
PDLIM3Q53GG5 SLC23A1-201ENST00000348729 2299 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
PDLIM3Q53GG5 OPRL1-203ENST00000355631 3147 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
PDLIM3Q53GG5 SLC35G1-201ENST00000371408 3490 ntAPPRIS P3 TSL 2 BASIC11.73□□□□□ -0.53
PDLIM3Q53GG5 COL5A1-AS1-201ENST00000371813 336 ntTSL 2 BASIC11.73□□□□□ -0.53
PDLIM3Q53GG5 CITED1-202ENST00000373619 886 ntAPPRIS P3 TSL 1 (best) BASIC11.73□□□□□ -0.53
PDLIM3Q53GG5 LYPLA2-202ENST00000374502 1072 ntTSL 2 BASIC11.73□□□□□ -0.53
PDLIM3Q53GG5 DEK-202ENST00000397239 3427 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
PDLIM3Q53GG5 ICAM2-201ENST00000412356 1334 ntAPPRIS P1 TSL 5 BASIC11.73□□□□□ -0.53
PDLIM3Q53GG5 POM121L8P-201ENST00000417732 1281 ntBASIC11.73□□□□□ -0.53
PDLIM3Q53GG5 AL109767.1-201ENST00000429450 564 ntTSL 4 BASIC11.73□□□□□ -0.53
PDLIM3Q53GG5 LINC01762-204ENST00000434879 436 ntTSL 2 BASIC11.73□□□□□ -0.53
Retrieved 100 of 98,524 protein–RNA pairs in 68.9 ms