Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 SRRM2-AS1-204ENST00000573802 818 ntTSL 2 BASIC12.24□□□□□ -0.45
COL8A1P27658 MIR4265-201ENST00000582152 99 ntBASIC12.24□□□□□ -0.45
COL8A1P27658 RN7SL478P-201ENST00000584358 298 ntBASIC12.24□□□□□ -0.45
COL8A1P27658 OVOL3-201ENST00000585332 695 ntAPPRIS ALT2 TSL 5 BASIC12.24□□□□□ -0.45
COL8A1P27658 AC011444.1-201ENST00000587836 639 ntTSL 3 BASIC12.24□□□□□ -0.45
COL8A1P27658 KANK2-207ENST00000589894 2703 ntAPPRIS ALT2 TSL 5 BASIC12.24□□□□□ -0.45
COL8A1P27658 BIRC5-211ENST00000592734 386 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
COL8A1P27658 AL136982.5-201ENST00000605222 294 ntBASIC12.24□□□□□ -0.45
COL8A1P27658 CBR3-AS1-207ENST00000608641 777 ntTSL 5 BASIC12.24□□□□□ -0.45
COL8A1P27658 AP006248.1-201ENST00000610471 67 ntBASIC12.24□□□□□ -0.45
COL8A1P27658 Metazoa_SRP.83-201ENST00000611762 320 ntBASIC12.24□□□□□ -0.45
COL8A1P27658 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC12.24□□□□□ -0.45
COL8A1P27658 Metazoa_SRP.37-201ENST00000617743 320 ntBASIC12.24□□□□□ -0.45
COL8A1P27658 HIST1H3B-201ENST00000621411 411 ntAPPRIS P1 BASIC12.24□□□□□ -0.45
COL8A1P27658 AC126755.5-201ENST00000622756 267 ntBASIC12.24□□□□□ -0.45
COL8A1P27658 AC090386.2-201ENST00000623010 1039 ntBASIC12.24□□□□□ -0.45
COL8A1P27658 AC010531.8-201ENST00000623341 685 ntBASIC12.24□□□□□ -0.45
COL8A1P27658 OVOL3-202ENST00000633214 675 ntAPPRIS P2 TSL 5 BASIC12.24□□□□□ -0.45
COL8A1P27658 PRPF8-205ENST00000572621 7445 ntAPPRIS P1 TSL 5 BASIC12.24□□□□□ -0.45
COL8A1P27658 PLIN4-201ENST00000301286 6353 ntAPPRIS P2 TSL 5 BASIC12.24□□□□□ -0.45
COL8A1P27658 PPIL6-202ENST00000424445 4031 ntTSL 5 BASIC12.24□□□□□ -0.45
COL8A1P27658 FKBP5-203ENST00000539068 3827 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
COL8A1P27658 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC12.24□□□□□ -0.45
COL8A1P27658 TRPV4-201ENST00000261740 3233 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
COL8A1P27658 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
COL8A1P27658 GSN-203ENST00000373808 2664 ntTSL 2 BASIC12.24□□□□□ -0.45
COL8A1P27658 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
COL8A1P27658 C20orf203-202ENST00000608990 5076 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
COL8A1P27658 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
COL8A1P27658 MECR-202ENST00000373791 2416 ntTSL 2 BASIC12.23□□□□□ -0.45
COL8A1P27658 LINC00910-206ENST00000592135 2438 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
COL8A1P27658 BLMH-201ENST00000261714 2365 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
COL8A1P27658 RABL2B-202ENST00000395590 2380 ntTSL 2 BASIC12.23□□□□□ -0.45
COL8A1P27658 ZNF664-202ENST00000392404 4262 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
COL8A1P27658 C7orf57-201ENST00000348904 2125 ntAPPRIS P3 TSL 1 (best) BASIC12.23□□□□□ -0.45
COL8A1P27658 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
COL8A1P27658 ZNF691-201ENST00000372502 1910 ntAPPRIS ALT2 TSL 2 BASIC12.23□□□□□ -0.45
COL8A1P27658 FAM30A-205ENST00000630242 9612 ntTSL 2 BASIC12.23□□□□□ -0.45
COL8A1P27658 CXCL12-201ENST00000343575 1857 ntAPPRIS P3 TSL 1 (best) BASIC12.23□□□□□ -0.45
COL8A1P27658 LINC01101-201ENST00000622953 1884 ntBASIC12.23□□□□□ -0.45
COL8A1P27658 CYP1B1-AS1-201ENST00000413828 1781 ntTSL 5 BASIC12.23□□□□□ -0.45
COL8A1P27658 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC12.23□□□□□ -0.45
COL8A1P27658 PHF14-215ENST00000634607 3407 ntAPPRIS P1 TSL 5 BASIC12.23□□□□□ -0.45
COL8A1P27658 CLUAP1-201ENST00000341633 1643 ntTSL 5 BASIC12.23□□□□□ -0.45
COL8A1P27658 SIPA1L3-201ENST00000222345 7987 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
COL8A1P27658 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
COL8A1P27658 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC12.23□□□□□ -0.45
COL8A1P27658 SYBU-206ENST00000424158 3007 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
COL8A1P27658 ZBED1-202ENST00000381222 4507 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
COL8A1P27658 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
COL8A1P27658 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
COL8A1P27658 CELF4-217ENST00000591282 1461 ntAPPRIS P3 TSL 1 (best) BASIC12.23□□□□□ -0.45
COL8A1P27658 PCCB-215ENST00000482086 1436 ntTSL 3 BASIC12.23□□□□□ -0.45
COL8A1P27658 TMEM9B-202ENST00000525069 1433 ntTSL 2 BASIC12.23□□□□□ -0.45
COL8A1P27658 STRC-205ENST00000450892 5680 ntAPPRIS P2 TSL 5 BASIC12.23□□□□□ -0.45
COL8A1P27658 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
COL8A1P27658 BPIFB6-201ENST00000349552 1362 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
COL8A1P27658 FAM9B-201ENST00000327220 1340 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
COL8A1P27658 SIRPB3P-201ENST00000340424 1216 ntBASIC12.23□□□□□ -0.45
COL8A1P27658 OLFML2B-202ENST00000367938 1153 ntTSL 2 BASIC12.23□□□□□ -0.45
COL8A1P27658 TPM3-211ENST00000368531 1115 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
COL8A1P27658 IFNLR1-203ENST00000374418 674 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
COL8A1P27658 LYPLA2-203ENST00000374503 868 ntTSL 2 BASIC12.23□□□□□ -0.45
COL8A1P27658 PCLAF-202ENST00000380258 911 ntTSL 2 BASIC12.23□□□□□ -0.45
COL8A1P27658 TRBV7-3-201ENST00000390361 397 ntAPPRIS P1 BASIC12.23□□□□□ -0.45
COL8A1P27658 NME2-201ENST00000393183 568 ntTSL 2 BASIC12.23□□□□□ -0.45
COL8A1P27658 AC099567.1-201ENST00000414418 931 ntTSL 5 BASIC12.23□□□□□ -0.45
COL8A1P27658 RIC3-205ENST00000425599 867 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
COL8A1P27658 AC092573.1-201ENST00000433054 884 ntBASIC12.23□□□□□ -0.45
COL8A1P27658 IMMP2L-204ENST00000447215 1164 ntTSL 3 BASIC12.23□□□□□ -0.45
COL8A1P27658 LINC00887-204ENST00000456816 796 ntTSL 3 BASIC12.23□□□□□ -0.45
COL8A1P27658 HOXB-AS3-206ENST00000474040 741 ntTSL 3 BASIC12.23□□□□□ -0.45
COL8A1P27658 RN7SL838P-201ENST00000481676 295 ntBASIC12.23□□□□□ -0.45
COL8A1P27658 AC004893.2-203ENST00000482799 796 ntTSL 3 BASIC12.23□□□□□ -0.45
COL8A1P27658 C21orf62-204ENST00000490358 1155 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
COL8A1P27658 GOLGA2P8-201ENST00000505201 779 ntBASIC12.23□□□□□ -0.45
COL8A1P27658 SNHG4-204ENST00000507197 865 ntTSL 2 BASIC12.23□□□□□ -0.45
COL8A1P27658 TIMM10-202ENST00000525158 530 ntAPPRIS P1 TSL 2 BASIC12.23□□□□□ -0.45
COL8A1P27658 AC022148.2-201ENST00000586176 560 ntBASIC12.23□□□□□ -0.45
COL8A1P27658 HPX-213ENST00000615166 826 ntTSL 5 BASIC12.23□□□□□ -0.45
COL8A1P27658 AC048344.4-201ENST00000619744 527 ntBASIC12.23□□□□□ -0.45
COL8A1P27658 TCAF2P1-201ENST00000291129 2421 ntBASIC12.23□□□□□ -0.45
COL8A1P27658 STRN-202ENST00000379213 2254 ntTSL 5 BASIC12.23□□□□□ -0.45
COL8A1P27658 DNAJC14-201ENST00000317269 3330 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
COL8A1P27658 GPR83-201ENST00000243673 4282 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
COL8A1P27658 MAPK7-202ENST00000308406 3149 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
COL8A1P27658 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC12.23□□□□□ -0.45
COL8A1P27658 DHTKD1-201ENST00000263035 5159 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
COL8A1P27658 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
COL8A1P27658 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
COL8A1P27658 CATSPER4-202ENST00000456354 1912 ntAPPRIS P2 TSL 1 (best) BASIC12.23□□□□□ -0.45
COL8A1P27658 AC082651.4-201ENST00000483023 1852 ntTSL 5 BASIC12.23□□□□□ -0.45
COL8A1P27658 LIMK2-203ENST00000340552 2789 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
COL8A1P27658 CYP20A1-203ENST00000429815 1812 ntTSL 2 BASIC12.23□□□□□ -0.45
COL8A1P27658 RNF157-AS1-204ENST00000590137 1812 ntTSL 2 BASIC12.23□□□□□ -0.45
COL8A1P27658 CICP24-201ENST00000605464 2705 ntBASIC12.23□□□□□ -0.45
COL8A1P27658 KDF1-202ENST00000616918 1651 ntTSL 2 BASIC12.22□□□□□ -0.45
COL8A1P27658 G3BP2-202ENST00000359707 4883 ntAPPRIS P4 TSL 1 (best) BASIC12.22□□□□□ -0.45
COL8A1P27658 ARPP19-202ENST00000561650 3245 ntTSL 2 BASIC12.22□□□□□ -0.45
COL8A1P27658 VGLL3-202ENST00000398399 10400 ntAPPRIS P3 TSL 1 (best) BASIC12.22□□□□□ -0.45
Retrieved 100 of 98,524 protein–RNA pairs in 38 ms