Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 ENDOV-229ENST00000523999 864 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
HMGB1P09429 INSC-205ENST00000525218 1576 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
HMGB1P09429 AP001547.1-201ENST00000527440 374 ntTSL 3 BASIC16.49■□□□□ 0.23
HMGB1P09429 AC104241.2-201ENST00000532748 789 ntTSL 3 BASIC16.49■□□□□ 0.23
HMGB1P09429 KLF17P1-201ENST00000547105 1126 ntBASIC16.49■□□□□ 0.23
HMGB1P09429 MESP2-203ENST00000560219 859 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
HMGB1P09429 GOLGA8T-202ENST00000569052 1896 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
HMGB1P09429 AC104961.2-201ENST00000578129 663 ntTSL 2 BASIC16.49■□□□□ 0.23
HMGB1P09429 MIR4754-201ENST00000582477 89 ntBASIC16.49■□□□□ 0.23
HMGB1P09429 TMEM205-210ENST00000588560 840 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
HMGB1P09429 CABLES2-201ENST00000279101 3785 ntAPPRIS P2 TSL 5 BASIC16.49■□□□□ 0.23
HMGB1P09429 PPP6R2-203ENST00000395741 3304 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
HMGB1P09429 IFNAR2-202ENST00000342136 2899 ntAPPRIS P4 TSL 1 (best) BASIC16.49■□□□□ 0.23
HMGB1P09429 KCTD18-202ENST00000409157 2556 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
HMGB1P09429 PNRC2-201ENST00000334351 2416 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
HMGB1P09429 AC005252.3-201ENST00000623855 2258 ntBASIC16.49■□□□□ 0.23
HMGB1P09429 ABCG2-201ENST00000237612 4479 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
HMGB1P09429 TLN2-202ENST00000472902 2116 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
HMGB1P09429 RERG-204ENST00000536465 2134 ntAPPRIS P1 TSL 3 BASIC16.49■□□□□ 0.23
HMGB1P09429 DSEL-201ENST00000310045 9531 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
HMGB1P09429 TMCC3-201ENST00000261226 5877 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
HMGB1P09429 CCNJ-201ENST00000265992 4115 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
HMGB1P09429 KIAA0895-203ENST00000338533 4132 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
HMGB1P09429 POLR1C-203ENST00000372389 1355 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
HMGB1P09429 FAM90A2P-201ENST00000511144 1395 ntBASIC16.49■□□□□ 0.23
HMGB1P09429 FAM90A25P-201ENST00000528404 1395 ntBASIC16.49■□□□□ 0.23
HMGB1P09429 ZSCAN2-202ENST00000327179 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC16.49■□□□□ 0.23
HMGB1P09429 KLHL13-207ENST00000540167 3396 ntTSL 2 BASIC16.49■□□□□ 0.23
HMGB1P09429 TMEM231-207ENST00000568377 2920 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
HMGB1P09429 SGK2-203ENST00000373092 1906 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
HMGB1P09429 NUP62CL-201ENST00000372466 1755 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
HMGB1P09429 PTPN9-206ENST00000618819 7813 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
HMGB1P09429 IFITM10-201ENST00000340134 3706 ntAPPRIS P1 TSL 3 BASIC16.48■□□□□ 0.23
HMGB1P09429 CRISPLD2-209ENST00000567845 2178 ntAPPRIS ALT1 TSL 5 BASIC16.48■□□□□ 0.23
HMGB1P09429 DBN1-203ENST00000393565 2701 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
HMGB1P09429 AL354707.1-201ENST00000615168 2013 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
HMGB1P09429 ATN1-201ENST00000356654 4351 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HMGB1P09429 C16orf45-209ENST00000566490 1854 ntTSL 5 BASIC16.48■□□□□ 0.23
HMGB1P09429 DESI2-202ENST00000302550 4208 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HMGB1P09429 ARMC7-201ENST00000245543 2126 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HMGB1P09429 RNF123-203ENST00000433785 1555 ntTSL 5 BASIC16.48■□□□□ 0.23
HMGB1P09429 EHD1-202ENST00000359393 3618 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
HMGB1P09429 GFPT2-201ENST00000253778 3093 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HMGB1P09429 SUV39H2-201ENST00000313519 3087 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
HMGB1P09429 DNAJB6-201ENST00000262177 2527 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
HMGB1P09429 AC138761.6-201ENST00000583997 1423 ntBASIC16.48■□□□□ 0.23
HMGB1P09429 RUNX1T1-251ENST00000615601 7372 ntAPPRIS ALT1 TSL 5 BASIC16.48■□□□□ 0.23
HMGB1P09429 BRSK2-202ENST00000382179 3576 ntTSL 2 BASIC16.48■□□□□ 0.23
HMGB1P09429 NUP210P1-201ENST00000357061 876 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
HMGB1P09429 AC016730.1-201ENST00000420828 832 ntTSL 2 BASIC16.48■□□□□ 0.23
HMGB1P09429 AL589843.1-201ENST00000423924 425 ntTSL 2 BASIC16.48■□□□□ 0.23
HMGB1P09429 HNRNPA1P2-207ENST00000432375 960 ntBASIC16.48■□□□□ 0.23
HMGB1P09429 AC012618.1-201ENST00000461223 412 ntBASIC16.48■□□□□ 0.23
HMGB1P09429 AC087269.1-202ENST00000519147 400 ntTSL 3 BASIC16.48■□□□□ 0.23
HMGB1P09429 PPFIBP1-204ENST00000535047 875 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
HMGB1P09429 UBE3B-206ENST00000536398 1120 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
HMGB1P09429 FAM192A-212ENST00000566077 1066 ntTSL 3 BASIC16.48■□□□□ 0.23
HMGB1P09429 MIR4525-201ENST00000580000 75 ntBASIC16.48■□□□□ 0.23
HMGB1P09429 AC244093.1-201ENST00000610837 814 ntBASIC16.48■□□□□ 0.23
HMGB1P09429 PGBD2-202ENST00000355360 2879 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
HMGB1P09429 KLHL13-204ENST00000371882 3256 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
HMGB1P09429 G3BP2-202ENST00000359707 4883 ntAPPRIS P4 TSL 1 (best) BASIC16.48■□□□□ 0.23
HMGB1P09429 ATG9A-201ENST00000361242 3130 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
HMGB1P09429 AC245140.2-201ENST00000624054 1939 ntBASIC16.48■□□□□ 0.23
HMGB1P09429 KLKP1-203ENST00000600104 1532 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
HMGB1P09429 PLAT-203ENST00000429089 2599 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
HMGB1P09429 TMEM184B-202ENST00000361906 3611 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HMGB1P09429 WASHC2C-201ENST00000336378 4669 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
HMGB1P09429 NT5DC4-201ENST00000327581 1767 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HMGB1P09429 ENO2-205ENST00000535366 2827 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HMGB1P09429 LINC00910-206ENST00000592135 2438 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
HMGB1P09429 ELP5-203ENST00000396627 1389 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
HMGB1P09429 ANGPTL2-202ENST00000373425 3707 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HMGB1P09429 KIAA0319-201ENST00000378214 6802 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
HMGB1P09429 MANEA-AS1-201ENST00000564541 2268 ntBASIC16.48■□□□□ 0.23
HMGB1P09429 KDM5B-202ENST00000367264 6449 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
HMGB1P09429 DTX3L-201ENST00000296161 5868 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HMGB1P09429 LINC00841-201ENST00000451929 2126 ntTSL 2 BASIC16.48■□□□□ 0.23
HMGB1P09429 DDC-204ENST00000426377 1700 ntTSL 3 BASIC16.48■□□□□ 0.23
HMGB1P09429 ALG11-204ENST00000616513 1983 ntTSL 2 BASIC16.47■□□□□ 0.23
HMGB1P09429 PPP3CA-202ENST00000394853 3604 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
HMGB1P09429 UVRAG-201ENST00000356136 4123 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
HMGB1P09429 DAB1-207ENST00000420954 1817 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
HMGB1P09429 WASHC1-201ENST00000442898 1827 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
HMGB1P09429 B3GAT1-203ENST00000524765 5737 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
HMGB1P09429 LAMP2-203ENST00000434600 2089 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
HMGB1P09429 OPN4-201ENST00000241891 2308 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
HMGB1P09429 TAOK2-204ENST00000543033 4072 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
HMGB1P09429 NUP153-203ENST00000613258 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
HMGB1P09429 DHTKD1-201ENST00000263035 5159 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
HMGB1P09429 XRRA1-207ENST00000527087 2505 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
HMGB1P09429 LRRC8D-201ENST00000337338 3950 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
HMGB1P09429 OSBPL3-201ENST00000313367 6760 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
HMGB1P09429 PSKH1-201ENST00000291041 3481 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
HMGB1P09429 SFSWAP-210ENST00000541286 3219 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
HMGB1P09429 C7orf57-201ENST00000348904 2125 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
HMGB1P09429 AL606491.1-201ENST00000412797 483 ntTSL 3 BASIC16.47■□□□□ 0.23
HMGB1P09429 AC005722.1-201ENST00000431878 964 ntBASIC16.47■□□□□ 0.23
HMGB1P09429 MSRA-203ENST00000441698 788 ntTSL 2 BASIC16.47■□□□□ 0.23
HMGB1P09429 RN7SL788P-201ENST00000460504 316 ntBASIC16.47■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 36.5 ms