Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 MFAP4-202ENST00000395592 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC88AQ3V6T2 PRR23C-201ENST00000413199 2791 ntAPPRIS P1 BASIC16.64■□□□□ 0.25
CCDC88AQ3V6T2 SEPT10-208ENST00000437928 1782 ntTSL 5 BASIC16.64■□□□□ 0.25
CCDC88AQ3V6T2 CHRD-206ENST00000450923 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC88AQ3V6T2 MARCH9-202ENST00000548358 1668 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
CCDC88AQ3V6T2 NARFL-202ENST00000540986 3212 ntTSL 2 BASIC16.64■□□□□ 0.25
CCDC88AQ3V6T2 MIRLET7BHG-203ENST00000435439 2264 ntTSL 2 BASIC16.64■□□□□ 0.25
CCDC88AQ3V6T2 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC16.63■□□□□ 0.25
CCDC88AQ3V6T2 ZMYND11-208ENST00000397962 2150 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CCDC88AQ3V6T2 RSPH4A-202ENST00000368580 1410 ntTSL 5 BASIC16.63■□□□□ 0.25
CCDC88AQ3V6T2 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
CCDC88AQ3V6T2 PHACTR3-204ENST00000371015 2728 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CCDC88AQ3V6T2 PIGV-202ENST00000374145 2713 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
CCDC88AQ3V6T2 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC16.63■□□□□ 0.25
CCDC88AQ3V6T2 DBNDD1-203ENST00000392973 2689 ntTSL 2 BASIC16.63■□□□□ 0.25
CCDC88AQ3V6T2 TAGLN3-205ENST00000478951 1301 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CCDC88AQ3V6T2 ZNF777-201ENST00000247930 3233 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CCDC88AQ3V6T2 PCDHGB1-202ENST00000611598 2592 ntAPPRIS ALT2 BASIC16.63■□□□□ 0.25
CCDC88AQ3V6T2 AL031577.1-201ENST00000339867 399 ntBASIC16.63■□□□□ 0.25
CCDC88AQ3V6T2 AC011239.1-201ENST00000430988 584 ntTSL 4 BASIC16.63■□□□□ 0.25
CCDC88AQ3V6T2 SAP18P2-201ENST00000434334 459 ntBASIC16.63■□□□□ 0.25
CCDC88AQ3V6T2 AL390961.2-201ENST00000454991 472 ntTSL 3 BASIC16.63■□□□□ 0.25
CCDC88AQ3V6T2 AC010183.1-201ENST00000552413 559 ntTSL 4 BASIC16.63■□□□□ 0.25
CCDC88AQ3V6T2 DSCAS-201ENST00000581836 553 ntTSL 4 BASIC16.63■□□□□ 0.25
CCDC88AQ3V6T2 CHD2-218ENST00000629346 1249 ntTSL 5 BASIC16.63■□□□□ 0.25
CCDC88AQ3V6T2 WDR1-203ENST00000382452 3142 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CCDC88AQ3V6T2 ZSCAN2-202ENST00000327179 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CCDC88AQ3V6T2 ZNF219-203ENST00000451119 2918 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
CCDC88AQ3V6T2 SLC25A4-201ENST00000281456 4440 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CCDC88AQ3V6T2 SMG8-201ENST00000300917 3263 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CCDC88AQ3V6T2 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CCDC88AQ3V6T2 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC16.63■□□□□ 0.25
CCDC88AQ3V6T2 AADACL4-201ENST00000376221 1575 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
CCDC88AQ3V6T2 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC16.63■□□□□ 0.25
CCDC88AQ3V6T2 CTSD-208ENST00000636843 1512 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
CCDC88AQ3V6T2 AL356753.1-201ENST00000427035 2018 ntTSL 2 BASIC16.63■□□□□ 0.25
CCDC88AQ3V6T2 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CCDC88AQ3V6T2 YIPF1-201ENST00000072644 1858 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CCDC88AQ3V6T2 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
CCDC88AQ3V6T2 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
CCDC88AQ3V6T2 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC16.63■□□□□ 0.25
CCDC88AQ3V6T2 SAFB-201ENST00000292123 3042 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
CCDC88AQ3V6T2 ELF2-202ENST00000379549 3005 ntTSL 2 BASIC16.63■□□□□ 0.25
CCDC88AQ3V6T2 BCL2L11-202ENST00000337565 720 ntTSL 5 BASIC16.63■□□□□ 0.25
CCDC88AQ3V6T2 IGSF23-201ENST00000402988 989 ntAPPRIS P2 TSL 3 BASIC16.63■□□□□ 0.25
CCDC88AQ3V6T2 ZNF32-AS2-201ENST00000418966 905 ntTSL 5 BASIC16.63■□□□□ 0.25
CCDC88AQ3V6T2 RARG-203ENST00000425354 2959 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
CCDC88AQ3V6T2 ATP5L2-201ENST00000505920 799 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
CCDC88AQ3V6T2 AC104759.1-201ENST00000559109 939 ntBASIC16.63■□□□□ 0.25
CCDC88AQ3V6T2 AC112220.4-201ENST00000604982 1263 ntBASIC16.63■□□□□ 0.25
CCDC88AQ3V6T2 HIST1H3E-201ENST00000614911 462 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
CCDC88AQ3V6T2 AL499606.1-201ENST00000627866 413 ntTSL 3 BASIC16.63■□□□□ 0.25
CCDC88AQ3V6T2 SIGLEC9-201ENST00000250360 1690 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
CCDC88AQ3V6T2 GGACT-201ENST00000376250 2804 ntAPPRIS P1 TSL 3 BASIC16.62■□□□□ 0.25
CCDC88AQ3V6T2 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CCDC88AQ3V6T2 KANK2-207ENST00000589894 2703 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
CCDC88AQ3V6T2 SIRT5-203ENST00000379262 2339 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CCDC88AQ3V6T2 MROH6-201ENST00000398882 3469 ntAPPRIS P2 TSL 5 BASIC16.62■□□□□ 0.25
CCDC88AQ3V6T2 AL157996.1-201ENST00000624684 2299 ntBASIC16.62■□□□□ 0.25
CCDC88AQ3V6T2 RPGRIP1-210ENST00000556336 2955 ntTSL 5 BASIC16.62■□□□□ 0.25
CCDC88AQ3V6T2 GP6-202ENST00000333884 2210 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
CCDC88AQ3V6T2 COMMD10-201ENST00000274458 1469 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CCDC88AQ3V6T2 PAX5-204ENST00000377852 1472 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CCDC88AQ3V6T2 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
CCDC88AQ3V6T2 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CCDC88AQ3V6T2 WFDC2-203ENST00000342873 818 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CCDC88AQ3V6T2 AC007279.1-201ENST00000448547 837 ntBASIC16.62■□□□□ 0.25
CCDC88AQ3V6T2 YBX1P3-201ENST00000468366 909 ntBASIC16.62■□□□□ 0.25
CCDC88AQ3V6T2 ALG10-202ENST00000538927 571 ntTSL 5 BASIC16.62■□□□□ 0.25
CCDC88AQ3V6T2 MYL6-215ENST00000549566 685 ntTSL 2 BASIC16.62■□□□□ 0.25
CCDC88AQ3V6T2 AC025265.3-201ENST00000550175 468 ntTSL 3 BASIC16.62■□□□□ 0.25
CCDC88AQ3V6T2 HNRNPC-221ENST00000555883 1182 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CCDC88AQ3V6T2 AC092720.1-202ENST00000565824 555 ntTSL 4 BASIC16.62■□□□□ 0.25
CCDC88AQ3V6T2 AC142381.4-201ENST00000566806 702 ntTSL 3 BASIC16.62■□□□□ 0.25
CCDC88AQ3V6T2 AC142086.5-201ENST00000567619 702 ntTSL 5 BASIC16.62■□□□□ 0.25
CCDC88AQ3V6T2 AC004584.1-201ENST00000572187 549 ntTSL 3 BASIC16.62■□□□□ 0.25
CCDC88AQ3V6T2 PCTP-206ENST00000573500 919 ntTSL 3 BASIC16.62■□□□□ 0.25
CCDC88AQ3V6T2 PACRG-AS3-203ENST00000614038 1246 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CCDC88AQ3V6T2 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
CCDC88AQ3V6T2 ATP5J2-PTCD1-201ENST00000413834 2491 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
CCDC88AQ3V6T2 IL2RG-203ENST00000374202 1534 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CCDC88AQ3V6T2 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
CCDC88AQ3V6T2 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
CCDC88AQ3V6T2 AC020659.1-201ENST00000309874 2900 ntTSL 2 BASIC16.62■□□□□ 0.25
CCDC88AQ3V6T2 CYP2B6-202ENST00000593831 1426 ntTSL 2 BASIC16.62■□□□□ 0.25
CCDC88AQ3V6T2 YWHAQ-201ENST00000238081 2208 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CCDC88AQ3V6T2 INCA1-201ENST00000355025 1383 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
CCDC88AQ3V6T2 ZSCAN21-203ENST00000456748 1904 ntTSL 5 BASIC16.61■□□□□ 0.25
CCDC88AQ3V6T2 LINC02433-202ENST00000507108 1395 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CCDC88AQ3V6T2 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC16.61■□□□□ 0.25
CCDC88AQ3V6T2 TRMT11-202ENST00000368332 1889 ntAPPRIS ALT1 TSL 2 BASIC16.61■□□□□ 0.25
CCDC88AQ3V6T2 SLC30A5-209ENST00000621204 3999 ntTSL 5 BASIC16.61■□□□□ 0.25
CCDC88AQ3V6T2 GNG4-201ENST00000366597 1595 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CCDC88AQ3V6T2 ADAM22-204ENST00000398204 9334 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
CCDC88AQ3V6T2 TEX38-201ENST00000334122 866 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CCDC88AQ3V6T2 CIDEC-204ENST00000430427 877 ntTSL 3 BASIC16.61■□□□□ 0.25
CCDC88AQ3V6T2 RN7SL22P-201ENST00000471800 269 ntBASIC16.61■□□□□ 0.25
CCDC88AQ3V6T2 HAND2-AS1-208ENST00000504740 837 ntTSL 3 BASIC16.61■□□□□ 0.25
CCDC88AQ3V6T2 AC099343.1-201ENST00000513481 609 ntBASIC16.61■□□□□ 0.25
CCDC88AQ3V6T2 AC068858.1-201ENST00000525114 1239 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 39.2 ms