Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 PFN2-202ENST00000423691 911 ntTSL 2 BASIC14.76□□□□□ -0.05
BDNFP23560 AC092638.2-201ENST00000441105 947 ntBASIC14.76□□□□□ -0.05
BDNFP23560 ASGR2-203ENST00000446679 879 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
BDNFP23560 AC018463.1-201ENST00000456674 917 ntBASIC14.76□□□□□ -0.05
BDNFP23560 IKBKB-212ENST00000519735 1166 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
BDNFP23560 BHMT-206ENST00000524080 1207 ntTSL 2 BASIC14.76□□□□□ -0.05
BDNFP23560 SPACA3-205ENST00000580599 949 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
BDNFP23560 SPINT2-204ENST00000587090 1246 ntAPPRIS ALT2 TSL 3 BASIC14.76□□□□□ -0.05
BDNFP23560 AC008758.6-201ENST00000598753 588 ntAPPRIS P1 TSL 4 BASIC14.76□□□□□ -0.05
BDNFP23560 PARVB-201ENST00000338758 5429 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
BDNFP23560 GGT5-202ENST00000327365 2494 ntAPPRIS P3 TSL 1 (best) BASIC14.76□□□□□ -0.05
BDNFP23560 SLC19A2-201ENST00000236137 3671 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
BDNFP23560 MED20-201ENST00000265350 2438 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
BDNFP23560 MYADM-205ENST00000391771 3111 ntAPPRIS P1 TSL 2 BASIC14.76□□□□□ -0.05
BDNFP23560 AC015712.6-201ENST00000431060 5068 ntTSL 2 BASIC14.76□□□□□ -0.05
BDNFP23560 CILP2-202ENST00000586018 4234 ntAPPRIS ALT1 TSL 2 BASIC14.76□□□□□ -0.05
BDNFP23560 AC239799.1-201ENST00000612520 3411 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
BDNFP23560 CATSPERE-202ENST00000366533 3019 ntAPPRIS P3 TSL 1 (best) BASIC14.76□□□□□ -0.05
BDNFP23560 ELN-208ENST00000380575 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
BDNFP23560 ASPG-206ENST00000551177 4851 ntAPPRIS P2 TSL 1 (best) BASIC14.76□□□□□ -0.05
BDNFP23560 RBM4B-201ENST00000310046 1840 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
BDNFP23560 ASPH-214ENST00000519234 2874 ntTSL 5 BASIC14.75□□□□□ -0.05
BDNFP23560 KCTD1-207ENST00000580059 1425 ntAPPRIS P1 TSL 3 BASIC14.75□□□□□ -0.05
BDNFP23560 AC104836.1-202ENST00000636805 6041 ntAPPRIS P1 TSL 5 BASIC14.75□□□□□ -0.05
BDNFP23560 CD93-201ENST00000246006 6708 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
BDNFP23560 ACTN1-205ENST00000538545 2813 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
BDNFP23560 MAGEA4-201ENST00000276344 1724 ntAPPRIS P1 TSL 2 BASIC14.75□□□□□ -0.05
BDNFP23560 RIC1-201ENST00000251879 4127 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
BDNFP23560 SLC35C2-213ENST00000543605 5740 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
BDNFP23560 MICAL3-206ENST00000441493 9445 ntAPPRIS P1 TSL 5 BASIC14.75□□□□□ -0.05
BDNFP23560 GPNMB-203ENST00000409458 1673 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
BDNFP23560 RFX8-201ENST00000428343 1686 ntAPPRIS P1 TSL 2 BASIC14.75□□□□□ -0.05
BDNFP23560 CD6-201ENST00000313421 3252 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
BDNFP23560 CACNA1A-211ENST00000592864 1623 ntTSL 3 BASIC14.75□□□□□ -0.05
BDNFP23560 RIC8B-202ENST00000392837 5135 ntAPPRIS ALT2 TSL 5 BASIC14.75□□□□□ -0.05
BDNFP23560 POM121-202ENST00000395270 7011 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
BDNFP23560 RNVU1-8-201ENST00000364272 125 ntBASIC14.75□□□□□ -0.05
BDNFP23560 CXCL12-202ENST00000374426 470 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
BDNFP23560 AC145207.1-201ENST00000415556 691 ntTSL 4 BASIC14.75□□□□□ -0.05
BDNFP23560 ACYP2-204ENST00000422521 1115 ntTSL 5 BASIC14.75□□□□□ -0.05
BDNFP23560 AL606748.1-201ENST00000423919 655 ntTSL 3 BASIC14.75□□□□□ -0.05
BDNFP23560 AC253536.3-201ENST00000444093 558 ntTSL 3 BASIC14.75□□□□□ -0.05
BDNFP23560 STK24P1-201ENST00000455035 1291 ntBASIC14.75□□□□□ -0.05
BDNFP23560 RN7SL375P-201ENST00000492442 298 ntBASIC14.75□□□□□ -0.05
BDNFP23560 SOCS2-AS1-204ENST00000551626 618 ntTSL 4 BASIC14.75□□□□□ -0.05
BDNFP23560 PLIN5-202ENST00000586133 907 ntTSL 3 BASIC14.75□□□□□ -0.05
BDNFP23560 AC023421.2-201ENST00000589510 313 ntTSL 5 BASIC14.75□□□□□ -0.05
BDNFP23560 DBP-202ENST00000593500 712 ntTSL 2 BASIC14.75□□□□□ -0.05
BDNFP23560 LINC01138-206ENST00000622328 2212 ntTSL 2 BASIC14.75□□□□□ -0.05
BDNFP23560 CTIF-202ENST00000382998 4407 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
BDNFP23560 ACTN4-203ENST00000424234 1566 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
BDNFP23560 AGBL3-202ENST00000435976 2495 ntTSL 5 BASIC14.75□□□□□ -0.05
BDNFP23560 ZFYVE27-202ENST00000357540 2765 ntTSL 2 BASIC14.75□□□□□ -0.05
BDNFP23560 ZFYVE27-204ENST00000370610 2769 ntTSL 2 BASIC14.75□□□□□ -0.05
BDNFP23560 DLGAP1-204ENST00000400149 5203 ntTSL 5 BASIC14.75□□□□□ -0.05
BDNFP23560 ZC3H4-201ENST00000253048 6119 ntAPPRIS P2 TSL 1 (best) BASIC14.75□□□□□ -0.05
BDNFP23560 NIT1-204ENST00000392190 1518 ntAPPRIS ALT1 TSL 3 BASIC14.75□□□□□ -0.05
BDNFP23560 OPN5-202ENST00000371211 1801 ntAPPRIS P2 TSL 1 (best) BASIC14.75□□□□□ -0.05
BDNFP23560 PGLYRP4-202ENST00000368739 2116 ntAPPRIS ALT1 TSL 5 BASIC14.75□□□□□ -0.05
BDNFP23560 WLS-201ENST00000262348 2748 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
BDNFP23560 OS9-204ENST00000389146 2091 ntTSL 2 BASIC14.75□□□□□ -0.05
BDNFP23560 MORC4-202ENST00000355610 3834 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
BDNFP23560 SIRT5-203ENST00000379262 2339 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
BDNFP23560 COL6A2-201ENST00000300527 3461 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
BDNFP23560 TTC7A-202ENST00000394850 4306 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
BDNFP23560 AKNA-206ENST00000374088 5464 ntAPPRIS P2 TSL 2 BASIC14.75□□□□□ -0.05
BDNFP23560 ACTR2-205ENST00000542850 1429 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
BDNFP23560 YWHAQ-201ENST00000238081 2208 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
BDNFP23560 MIR22HG-201ENST00000334146 1383 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
BDNFP23560 ANXA5-202ENST00000501272 1363 ntTSL 5 BASIC14.74□□□□□ -0.05
BDNFP23560 AC090502.4-201ENST00000551714 1386 ntBASIC14.74□□□□□ -0.05
BDNFP23560 ZNF785-201ENST00000395216 3282 ntAPPRIS P2 TSL 1 (best) BASIC14.74□□□□□ -0.05
BDNFP23560 AC092535.1-201ENST00000417557 2165 ntTSL 2 BASIC14.74□□□□□ -0.05
BDNFP23560 TXNDC9-201ENST00000264255 1637 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
BDNFP23560 TMPRSS4-211ENST00000522307 1634 ntTSL 2 BASIC14.74□□□□□ -0.05
BDNFP23560 SARM1-208ENST00000585482 10309 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
BDNFP23560 PARP3-203ENST00000431474 2360 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
BDNFP23560 TMEM9-203ENST00000367333 1564 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
BDNFP23560 AP4M1-204ENST00000421755 1572 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
BDNFP23560 PTBP1-221ENST00000635647 3691 ntTSL 5 BASIC14.74□□□□□ -0.05
BDNFP23560 ADAMTS10-201ENST00000270328 4194 ntAPPRIS P1 TSL 5 BASIC14.74□□□□□ -0.05
BDNFP23560 TMUB2-211ENST00000589184 1837 ntTSL 5 BASIC14.74□□□□□ -0.05
BDNFP23560 KIF26B-202ENST00000407071 7287 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
BDNFP23560 FOXM1-203ENST00000361953 3370 ntAPPRIS ALT1 TSL 1 (best) BASIC14.74□□□□□ -0.05
BDNFP23560 TRIM41-201ENST00000315073 3637 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
BDNFP23560 THBD-201ENST00000377103 4109 ntAPPRIS P1 BASIC14.74□□□□□ -0.05
BDNFP23560 ACYP1-201ENST00000238618 627 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
BDNFP23560 TCL1B-201ENST00000340722 1166 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
BDNFP23560 AIMP2-202ENST00000395236 860 ntTSL 2 BASIC14.74□□□□□ -0.05
BDNFP23560 ZFAND2B-205ENST00000409319 771 ntTSL 2 BASIC14.74□□□□□ -0.05
BDNFP23560 AC012442.2-201ENST00000414784 425 ntTSL 2 BASIC14.74□□□□□ -0.05
BDNFP23560 AK2P2-201ENST00000439142 405 ntBASIC14.74□□□□□ -0.05
BDNFP23560 AC004837.1-201ENST00000446267 564 ntBASIC14.74□□□□□ -0.05
BDNFP23560 PRSS3P1-201ENST00000503996 742 ntBASIC14.74□□□□□ -0.05
BDNFP23560 SNCB-203ENST00000506696 552 ntAPPRIS P1 TSL 5 BASIC14.74□□□□□ -0.05
BDNFP23560 RPS23-204ENST00000507980 836 ntTSL 2 BASIC14.74□□□□□ -0.05
BDNFP23560 RN7SKP155-201ENST00000516031 288 ntBASIC14.74□□□□□ -0.05
BDNFP23560 AL132994.1-201ENST00000554098 400 ntBASIC14.74□□□□□ -0.05
BDNFP23560 TNNI1-205ENST00000555948 580 ntTSL 5 BASIC14.74□□□□□ -0.05
BDNFP23560 AP001269.2-201ENST00000590055 379 ntTSL 3 BASIC14.74□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 38.5 ms