Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 NCR3-204ENST00000376073 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
LIG3P49916 AL451065.1-201ENST00000428958 238 ntTSL 5 BASIC14.9□□□□□ -0.02
LIG3P49916 HSPB1P2-201ENST00000448722 546 ntBASIC14.9□□□□□ -0.02
LIG3P49916 AC104306.2-201ENST00000451877 341 ntBASIC14.9□□□□□ -0.02
LIG3P49916 PGAP2-209ENST00000464261 830 ntTSL 3 BASIC14.9□□□□□ -0.02
LIG3P49916 PRSS30P-204ENST00000489864 650 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
LIG3P49916 CRYGN-205ENST00000491928 698 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
LIG3P49916 AC108134.4-201ENST00000570700 302 ntTSL 3 BASIC14.9□□□□□ -0.02
LIG3P49916 AL118558.3-201ENST00000607414 1079 ntBASIC14.9□□□□□ -0.02
LIG3P49916 THAP4-206ENST00000612200 969 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
LIG3P49916 AL136301.1-201ENST00000615830 422 ntBASIC14.9□□□□□ -0.02
LIG3P49916 PDE9A-202ENST00000328862 1956 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
LIG3P49916 PDE9A-208ENST00000398225 1963 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
LIG3P49916 PAX8-203ENST00000348715 3966 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
LIG3P49916 CHIT1-202ENST00000367229 2246 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
LIG3P49916 ZMIZ2-206ENST00000441627 5089 ntAPPRIS P4 TSL 1 (best) BASIC14.9□□□□□ -0.02
LIG3P49916 ASCC3-203ENST00000369143 3433 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
LIG3P49916 BCAM-211ENST00000611077 3430 ntTSL 5 BASIC14.9□□□□□ -0.02
LIG3P49916 EOGT-202ENST00000383701 4731 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
LIG3P49916 HORMAD1-201ENST00000322343 1771 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
LIG3P49916 SLC35E2B-205ENST00000617444 6283 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
LIG3P49916 SNAP47-203ENST00000366760 1446 ntAPPRIS ALT2 TSL 2 BASIC14.9□□□□□ -0.02
LIG3P49916 RXRG-204ENST00000619224 2252 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
LIG3P49916 RGS3-205ENST00000374134 2862 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
LIG3P49916 ADCYAP1R1-201ENST00000304166 6487 ntAPPRIS P3 TSL 2 BASIC14.9□□□□□ -0.02
LIG3P49916 KIF6-201ENST00000229913 1330 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
LIG3P49916 UMODL1-204ENST00000400427 5442 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
LIG3P49916 CARS-AS1-201ENST00000499962 2664 ntTSL 2 BASIC14.89□□□□□ -0.03
LIG3P49916 ABCC6-201ENST00000205557 5747 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
LIG3P49916 ITGB8-201ENST00000222573 8751 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
LIG3P49916 STX16-NPEPL1-202ENST00000530122 3433 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
LIG3P49916 ARAP1-202ENST00000359373 5767 ntAPPRIS ALT2 TSL 2 BASIC14.89□□□□□ -0.03
LIG3P49916 SIGLEC6-201ENST00000343300 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
LIG3P49916 MAGEA4-205ENST00000393920 1721 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
LIG3P49916 AAAS-202ENST00000394384 1703 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
LIG3P49916 AC010255.3-203ENST00000509403 1727 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
LIG3P49916 ENOX1-201ENST00000261488 2982 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
LIG3P49916 CCNE1-202ENST00000357943 1641 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
LIG3P49916 SUPT20HL1-201ENST00000436466 2618 ntBASIC14.89□□□□□ -0.03
LIG3P49916 VAMP4-201ENST00000236192 5159 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
LIG3P49916 DISC1-206ENST00000366637 6848 ntAPPRIS ALT2 TSL 5 BASIC14.89□□□□□ -0.03
LIG3P49916 API5-203ENST00000455725 2257 ntTSL 2 BASIC14.89□□□□□ -0.03
LIG3P49916 LINC00567-201ENST00000569854 3409 ntBASIC14.89□□□□□ -0.03
LIG3P49916 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
LIG3P49916 IFNL2-201ENST00000331982 737 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
LIG3P49916 NDUFAB1P1-201ENST00000404262 460 ntBASIC14.89□□□□□ -0.03
LIG3P49916 LINC01762-204ENST00000434879 436 ntTSL 2 BASIC14.89□□□□□ -0.03
LIG3P49916 ZNF789-204ENST00000448667 1055 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
LIG3P49916 AC004471.1-201ENST00000456035 582 ntTSL 4 BASIC14.89□□□□□ -0.03
LIG3P49916 TAF8-204ENST00000456846 1293 ntAPPRIS ALT1 TSL 1 (best) BASIC14.89□□□□□ -0.03
LIG3P49916 TPD52L1-208ENST00000528193 789 ntTSL 5 BASIC14.89□□□□□ -0.03
LIG3P49916 FAM8A2P-201ENST00000528813 1142 ntBASIC14.89□□□□□ -0.03
LIG3P49916 RPL28-208ENST00000559463 852 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
LIG3P49916 PIGH-209ENST00000559581 1049 ntTSL 4 BASIC14.89□□□□□ -0.03
LIG3P49916 AC120498.1-201ENST00000563593 476 ntTSL 4 BASIC14.89□□□□□ -0.03
LIG3P49916 AC093525.1-201ENST00000569317 596 ntAPPRIS P1 TSL 3 BASIC14.89□□□□□ -0.03
LIG3P49916 AC011495.3-201ENST00000596472 427 ntTSL 2 BASIC14.89□□□□□ -0.03
LIG3P49916 AC097634.3-201ENST00000613067 820 ntTSL 3 BASIC14.89□□□□□ -0.03
LIG3P49916 AL590644.3-201ENST00000635428 1228 ntTSL 5 BASIC14.89□□□□□ -0.03
LIG3P49916 FHOD3-201ENST00000257209 4967 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
LIG3P49916 GLIS3-202ENST00000381971 3961 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
LIG3P49916 CCT7-201ENST00000258091 1916 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
LIG3P49916 ENO2-214ENST00000545045 1911 ntTSL 5 BASIC14.89□□□□□ -0.03
LIG3P49916 CACNA1C-231ENST00000616390 2833 ntTSL 2 BASIC14.89□□□□□ -0.03
LIG3P49916 AC027369.3-201ENST00000530465 3707 ntBASIC14.89□□□□□ -0.03
LIG3P49916 SLC26A6-205ENST00000395550 2589 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
LIG3P49916 CTBP1-AS2-206ENST00000581398 5652 ntBASIC14.89□□□□□ -0.03
LIG3P49916 NGEF-201ENST00000264051 3215 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
LIG3P49916 STYXL1-201ENST00000248600 1415 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
LIG3P49916 CLIC5-208ENST00000544153 2051 ntTSL 2 BASIC14.89□□□□□ -0.03
LIG3P49916 MYO16-203ENST00000357550 6779 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
LIG3P49916 YWHAE-208ENST00000571732 1818 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
LIG3P49916 MEGF8-201ENST00000251268 9549 ntAPPRIS ALT2 TSL 5 BASIC14.89□□□□□ -0.03
LIG3P49916 ZMYND10-201ENST00000231749 2896 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
LIG3P49916 BTNL8-201ENST00000231229 2229 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
LIG3P49916 KCNMA1-291ENST00000640834 3664 ntAPPRIS ALT2 TSL 5 BASIC14.89□□□□□ -0.03
LIG3P49916 TRIM3-203ENST00000525074 3044 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
LIG3P49916 CRY2-212ENST00000616623 4204 ntAPPRIS P2 TSL 1 (best) BASIC14.89□□□□□ -0.03
LIG3P49916 SLC6A12-207ENST00000536824 2101 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
LIG3P49916 TMEM233-201ENST00000426426 3081 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
LIG3P49916 DNAJB13-201ENST00000339764 1875 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
LIG3P49916 SLC2A14-213ENST00000539924 1873 ntAPPRIS ALT2 TSL 2 BASIC14.89□□□□□ -0.03
LIG3P49916 UCN2-201ENST00000273610 1481 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
LIG3P49916 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
LIG3P49916 ANKRD11-203ENST00000378330 9132 ntAPPRIS P2 TSL 1 (best) BASIC14.89□□□□□ -0.03
LIG3P49916 CERS3-202ENST00000394113 2045 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
LIG3P49916 LINC02015-202ENST00000436078 2957 ntTSL 2 BASIC14.88□□□□□ -0.03
LIG3P49916 AL031714.1-202ENST00000568106 3107 ntTSL 5 BASIC14.88□□□□□ -0.03
LIG3P49916 TRPM5-203ENST00000533060 3562 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
LIG3P49916 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
LIG3P49916 ELN-234ENST00000621115 3452 ntAPPRIS ALT2 TSL 2 BASIC14.88□□□□□ -0.03
LIG3P49916 NFATC4-226ENST00000556279 2924 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
LIG3P49916 BCAS3-221ENST00000588874 2948 ntAPPRIS ALT2 TSL 2 BASIC14.88□□□□□ -0.03
LIG3P49916 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC14.88□□□□□ -0.03
LIG3P49916 ADAM8-201ENST00000415217 3077 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
LIG3P49916 ARGLU1-203ENST00000400198 3390 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
LIG3P49916 CDH16-204ENST00000565796 2694 ntTSL 2 BASIC14.88□□□□□ -0.03
LIG3P49916 TNRC18P1-201ENST00000502875 3650 ntBASIC14.88□□□□□ -0.03
LIG3P49916 FIS1-201ENST00000223136 734 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
LIG3P49916 COX6A2-201ENST00000287490 440 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 75.4 ms