Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC16.3■□□□□ 0.2
BRCA1P38398 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC16.3■□□□□ 0.2
BRCA1P38398 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC16.3■□□□□ 0.2
BRCA1P38398 CHIT1-202ENST00000367229 2246 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
BRCA1P38398 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
BRCA1P38398 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
BRCA1P38398 TTC39A-204ENST00000371750 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
BRCA1P38398 SDR16C5-203ENST00000522671 1988 ntTSL 2 BASIC16.3■□□□□ 0.2
BRCA1P38398 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
BRCA1P38398 PRSS8-201ENST00000317508 1872 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
BRCA1P38398 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
BRCA1P38398 KIR3DL3-201ENST00000291860 1691 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
BRCA1P38398 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
BRCA1P38398 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC16.29■□□□□ 0.2
BRCA1P38398 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
BRCA1P38398 MRPS9-201ENST00000258455 1500 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
BRCA1P38398 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
BRCA1P38398 NBEAP3-201ENST00000420638 1493 ntBASIC16.29■□□□□ 0.2
BRCA1P38398 LINC00969-231ENST00000597482 1476 ntTSL 5 BASIC16.29■□□□□ 0.2
BRCA1P38398 MGLL-202ENST00000398101 1414 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
BRCA1P38398 CICP16-201ENST00000502609 2813 ntBASIC16.29■□□□□ 0.2
BRCA1P38398 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
BRCA1P38398 C19orf33-201ENST00000301246 467 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
BRCA1P38398 TPI1P3-201ENST00000335020 740 ntBASIC16.29■□□□□ 0.2
BRCA1P38398 THYN1-202ENST00000352327 835 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
BRCA1P38398 GAPDH-202ENST00000396856 1266 ntTSL 5 BASIC16.29■□□□□ 0.2
BRCA1P38398 MBL3P-201ENST00000402234 644 ntBASIC16.29■□□□□ 0.2
BRCA1P38398 AL021407.3-201ENST00000407522 486 ntBASIC16.29■□□□□ 0.2
BRCA1P38398 RIBC1-203ENST00000414955 1281 ntTSL 2 BASIC16.29■□□□□ 0.2
BRCA1P38398 HLA-DQB3-203ENST00000425319 356 ntBASIC16.29■□□□□ 0.2
BRCA1P38398 EIF2B5-202ENST00000432569 984 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
BRCA1P38398 HNRNPA1P30-202ENST00000440699 997 ntBASIC16.29■□□□□ 0.2
BRCA1P38398 SATB2-AS1-202ENST00000441234 468 ntTSL 3 BASIC16.29■□□□□ 0.2
BRCA1P38398 RPL21P135-201ENST00000442539 791 ntBASIC16.29■□□□□ 0.2
BRCA1P38398 RN7SL483P-201ENST00000478417 285 ntBASIC16.29■□□□□ 0.2
BRCA1P38398 AC022447.2-201ENST00000509750 543 ntTSL 3 BASIC16.29■□□□□ 0.2
BRCA1P38398 AC027290.1-201ENST00000537827 484 ntTSL 5 BASIC16.29■□□□□ 0.2
BRCA1P38398 SNORD55-201ENST00000581525 80 ntBASIC16.29■□□□□ 0.2
BRCA1P38398 AC011479.1-202ENST00000591889 528 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
BRCA1P38398 DUSP22-206ENST00000603453 804 ntTSL 4 BASIC16.29■□□□□ 0.2
BRCA1P38398 UBA3-212ENST00000630585 390 ntTSL 4 BASIC16.29■□□□□ 0.2
BRCA1P38398 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
BRCA1P38398 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC16.29■□□□□ 0.2
BRCA1P38398 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
BRCA1P38398 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
BRCA1P38398 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
BRCA1P38398 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
BRCA1P38398 CHRNA1-208ENST00000636168 1862 ntTSL 5 BASIC16.29■□□□□ 0.2
BRCA1P38398 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
BRCA1P38398 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
BRCA1P38398 CATSPERD-202ENST00000381624 2516 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
BRCA1P38398 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
BRCA1P38398 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
BRCA1P38398 AC073488.1-201ENST00000416620 1600 ntBASIC16.29■□□□□ 0.2
BRCA1P38398 PEX11B-203ENST00000537888 1632 ntTSL 2 BASIC16.29■□□□□ 0.2
BRCA1P38398 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
BRCA1P38398 BANP-201ENST00000286122 2368 ntTSL 5 BASIC16.29■□□□□ 0.2
BRCA1P38398 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC16.29■□□□□ 0.2
BRCA1P38398 SLC7A4-202ENST00000403586 2307 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
BRCA1P38398 PEX5L-211ENST00000472994 2235 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
BRCA1P38398 SH3GLB2-206ENST00000417224 1468 ntTSL 5 BASIC16.29■□□□□ 0.2
BRCA1P38398 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
BRCA1P38398 ZBTB17-201ENST00000375733 2770 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
BRCA1P38398 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
BRCA1P38398 PRY-201ENST00000303728 1238 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
BRCA1P38398 PRY2-201ENST00000303804 1238 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
BRCA1P38398 PRYP3-201ENST00000343584 1063 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
BRCA1P38398 RPS7-202ENST00000403564 764 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
BRCA1P38398 AL512444.1-201ENST00000419644 480 ntTSL 2 BASIC16.29■□□□□ 0.2
BRCA1P38398 PGAP2-219ENST00000479072 894 ntTSL 3 BASIC16.29■□□□□ 0.2
BRCA1P38398 ASS1P9-201ENST00000513426 1236 ntBASIC16.29■□□□□ 0.2
BRCA1P38398 AP3M2-205ENST00000517922 1094 ntTSL 2 BASIC16.29■□□□□ 0.2
BRCA1P38398 IGHV3OR16-11-201ENST00000565524 349 ntBASIC16.29■□□□□ 0.2
BRCA1P38398 AC022211.3-201ENST00000584339 400 ntTSL 3 BASIC16.29■□□□□ 0.2
BRCA1P38398 AC008764.4-207ENST00000600705 956 ntTSL 2 BASIC16.29■□□□□ 0.2
BRCA1P38398 RN7SL827P-201ENST00000607480 288 ntBASIC16.29■□□□□ 0.2
BRCA1P38398 AC108673.2-201ENST00000608909 565 ntBASIC16.29■□□□□ 0.2
BRCA1P38398 PSMG3-AS1-207ENST00000612019 586 ntTSL 4 BASIC16.29■□□□□ 0.2
BRCA1P38398 LINC01615-203ENST00000634877 673 ntTSL 5 BASIC16.29■□□□□ 0.2
BRCA1P38398 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
BRCA1P38398 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
BRCA1P38398 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
BRCA1P38398 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
BRCA1P38398 FES-204ENST00000414248 2327 ntTSL 2 BASIC16.28■□□□□ 0.2
BRCA1P38398 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
BRCA1P38398 DDX11L1-202ENST00000456328 1657 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
BRCA1P38398 DDX11L10-202ENST00000513886 1652 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
BRCA1P38398 DDX11L9-203ENST00000562189 1652 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
BRCA1P38398 ALDOA-213ENST00000564595 1663 ntTSL 2 BASIC16.28■□□□□ 0.2
BRCA1P38398 SH3D21-205ENST00000505871 2205 ntTSL 2 BASIC16.28■□□□□ 0.2
BRCA1P38398 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
BRCA1P38398 MBOAT4-201ENST00000320542 1512 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
BRCA1P38398 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC16.28■□□□□ 0.2
BRCA1P38398 CACNA2D4-209ENST00000538450 1498 ntTSL 2 BASIC16.28■□□□□ 0.2
BRCA1P38398 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
BRCA1P38398 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
BRCA1P38398 TMCO3-207ENST00000474393 2843 ntTSL 2 BASIC16.28■□□□□ 0.2
BRCA1P38398 AGK-211ENST00000629555 2765 ntTSL 5 BASIC16.28■□□□□ 0.2
BRCA1P38398 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC16.28■□□□□ 0.2
BRCA1P38398 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 43.7 ms