Protein–RNA interactions for Protein: P12110

COL6A2, Collagen alpha-2(VI) chain, humanhuman

Predictions only

Length 1,019 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A2P12110 HLA-V-201ENST00000429037 534 ntBASIC13.99□□□□□ -0.17
COL6A2P12110 TUBB8P8-201ENST00000458717 1058 ntBASIC13.99□□□□□ -0.17
COL6A2P12110 MRAS-205ENST00000474559 856 ntAPPRIS P1 TSL 3 BASIC13.99□□□□□ -0.17
COL6A2P12110 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
COL6A2P12110 PAX5-211ENST00000522003 1019 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
COL6A2P12110 TGIF1-218ENST00000551402 1089 ntTSL 2 BASIC13.99□□□□□ -0.17
COL6A2P12110 HNRNPA1P48-202ENST00000565308 961 ntBASIC13.99□□□□□ -0.17
COL6A2P12110 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC13.99□□□□□ -0.17
COL6A2P12110 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
COL6A2P12110 LINC01672-205ENST00000635092 633 ntTSL 5 BASIC13.99□□□□□ -0.17
COL6A2P12110 KCNJ9-201ENST00000368088 4170 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
COL6A2P12110 HIPK3-201ENST00000303296 7408 ntTSL 5 BASIC13.99□□□□□ -0.17
COL6A2P12110 GJB1-201ENST00000361726 1637 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
COL6A2P12110 PSIP1-203ENST00000380733 3391 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
COL6A2P12110 DNAJC22-202ENST00000549441 4412 ntAPPRIS P1 TSL 2 BASIC13.99□□□□□ -0.17
COL6A2P12110 MSMO1-201ENST00000261507 2269 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
COL6A2P12110 SYBU-204ENST00000408908 2983 ntAPPRIS ALT2 TSL 5 BASIC13.99□□□□□ -0.17
COL6A2P12110 AC008620.2-201ENST00000510294 1569 ntBASIC13.99□□□□□ -0.17
COL6A2P12110 SERPINH1-205ENST00000525876 2283 ntTSL 2 BASIC13.99□□□□□ -0.17
COL6A2P12110 STIM1-220ENST00000616714 4356 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
COL6A2P12110 C7orf65-201ENST00000408988 2911 ntTSL 2 BASIC13.99□□□□□ -0.17
COL6A2P12110 DSTN-203ENST00000474024 1853 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
COL6A2P12110 ISY1-RAB43-201ENST00000418265 4868 ntAPPRIS P1 TSL 2 BASIC13.99□□□□□ -0.17
COL6A2P12110 ATXN2L-215ENST00000564304 3514 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
COL6A2P12110 GCKR-201ENST00000264717 2186 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
COL6A2P12110 MEST-206ENST00000416162 2158 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
COL6A2P12110 WARS2-201ENST00000235521 2800 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
COL6A2P12110 FMNL3-205ENST00000550488 4120 ntAPPRIS ALT2 TSL 5 BASIC13.99□□□□□ -0.17
COL6A2P12110 TRIM69-206ENST00000559390 2486 ntAPPRIS P1 TSL 2 BASIC13.99□□□□□ -0.17
COL6A2P12110 TBC1D8-AS1-201ENST00000610202 2478 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
COL6A2P12110 RNF214-201ENST00000300650 2755 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
COL6A2P12110 AL162431.2-201ENST00000358073 2424 ntTSL 2 BASIC13.99□□□□□ -0.17
COL6A2P12110 ZNF426-204ENST00000593003 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
COL6A2P12110 NKX2-1-AS1-201ENST00000521292 1775 ntTSL 2 BASIC13.99□□□□□ -0.17
COL6A2P12110 SYNPR-209ENST00000478300 2709 ntAPPRIS P4 TSL 1 (best) BASIC13.99□□□□□ -0.17
COL6A2P12110 MEX3B-202ENST00000558133 4333 ntBASIC13.99□□□□□ -0.17
COL6A2P12110 ZNF568-206ENST00000455427 2378 ntTSL 2 BASIC13.98□□□□□ -0.17
COL6A2P12110 FBXL21-202ENST00000467490 1742 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
COL6A2P12110 MARK2P16-201ENST00000605714 1723 ntBASIC13.98□□□□□ -0.17
COL6A2P12110 AC018629.1-201ENST00000623381 1736 ntBASIC13.98□□□□□ -0.17
COL6A2P12110 LSM14A-203ENST00000544216 3596 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
COL6A2P12110 GULP1-207ENST00000409843 2643 ntAPPRIS ALT1 TSL 2 BASIC13.98□□□□□ -0.17
COL6A2P12110 CPEB4-208ENST00000520867 2607 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
COL6A2P12110 HELZ2-204ENST00000467148 8064 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
COL6A2P12110 DUOXA1-205ENST00000558422 1678 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
COL6A2P12110 SLC38A5-213ENST00000620913 1993 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
COL6A2P12110 GNAS-213ENST00000371099 3709 ntTSL 5 BASIC13.98□□□□□ -0.17
COL6A2P12110 IZUMO1-201ENST00000332955 1621 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
COL6A2P12110 PSIP1-204ENST00000380738 3364 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
COL6A2P12110 AC092143.1-201ENST00000556922 2776 ntAPPRIS P1 TSL 2 BASIC13.98□□□□□ -0.17
COL6A2P12110 PIGV-202ENST00000374145 2713 ntAPPRIS P1 TSL 2 BASIC13.98□□□□□ -0.17
COL6A2P12110 SPATA12-201ENST00000334325 2413 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
COL6A2P12110 GNAI2-203ENST00000422163 2407 ntTSL 2 BASIC13.98□□□□□ -0.17
COL6A2P12110 ZKSCAN2-201ENST00000328086 7523 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
COL6A2P12110 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
COL6A2P12110 HIST1H2BPS3-201ENST00000419683 341 ntBASIC13.98□□□□□ -0.17
COL6A2P12110 NME2P1-201ENST00000426182 414 ntBASIC13.98□□□□□ -0.17
COL6A2P12110 HVCN1-203ENST00000439744 1215 ntTSL 2 BASIC13.98□□□□□ -0.17
COL6A2P12110 KLF2P4-201ENST00000451959 1225 ntBASIC13.98□□□□□ -0.17
COL6A2P12110 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC13.98□□□□□ -0.17
COL6A2P12110 ORC6-206ENST00000568364 888 ntTSL 5 BASIC13.98□□□□□ -0.17
COL6A2P12110 AC106886.1-201ENST00000568660 600 ntBASIC13.98□□□□□ -0.17
COL6A2P12110 TNNT1-212ENST00000588981 1163 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
COL6A2P12110 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
COL6A2P12110 PRRC2B-210ENST00000638390 1084 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
COL6A2P12110 TMEM87B-201ENST00000283206 5212 ntAPPRIS P1 TSL 2 BASIC13.98□□□□□ -0.17
COL6A2P12110 BCRP2-203ENST00000461808 1832 ntTSL 2 BASIC13.98□□□□□ -0.17
COL6A2P12110 Z98257.2-202ENST00000641138 1548 ntBASIC13.98□□□□□ -0.17
COL6A2P12110 TTC38-201ENST00000381031 2610 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
COL6A2P12110 CARS-214ENST00000529772 2637 ntTSL 2 BASIC13.98□□□□□ -0.17
COL6A2P12110 DCAF13-209ENST00000616836 2639 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
COL6A2P12110 SPDYA-202ENST00000379579 1759 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
COL6A2P12110 SYT4-205ENST00000590752 1765 ntTSL 2 BASIC13.98□□□□□ -0.17
COL6A2P12110 LRRFIP2-202ENST00000354379 2821 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
COL6A2P12110 ELAVL1-205ENST00000596459 1473 ntAPPRIS P1 TSL 2 BASIC13.98□□□□□ -0.17
COL6A2P12110 GEM-201ENST00000297596 2208 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
COL6A2P12110 SLC4A7-214ENST00000455077 3775 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
COL6A2P12110 GLB1L-201ENST00000295759 2745 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
COL6A2P12110 FP565260.6-203ENST00000620015 1435 ntTSL 3 BASIC13.98□□□□□ -0.17
COL6A2P12110 SORCS1-201ENST00000263054 7272 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
COL6A2P12110 FOXP3-204ENST00000455775 2448 ntTSL 5 BASIC13.98□□□□□ -0.17
COL6A2P12110 MOGAT3-201ENST00000223114 2132 ntAPPRIS P2 TSL 1 (best) BASIC13.97□□□□□ -0.17
COL6A2P12110 BAIAP2-202ENST00000321300 2879 ntAPPRIS P4 TSL 1 (best) BASIC13.97□□□□□ -0.17
COL6A2P12110 CENPL-202ENST00000356198 2357 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
COL6A2P12110 NBPF3-205ENST00000454000 2133 ntAPPRIS ALT2 TSL 2 BASIC13.97□□□□□ -0.17
COL6A2P12110 S100PBP-203ENST00000373476 3320 ntAPPRIS P1 TSL 2 BASIC13.97□□□□□ -0.17
COL6A2P12110 MYLK-208ENST00000475616 5745 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
COL6A2P12110 AC026271.4-201ENST00000578214 1833 ntBASIC13.97□□□□□ -0.17
COL6A2P12110 ERICH1-206ENST00000522706 1551 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
COL6A2P12110 STX16-207ENST00000371141 4937 ntAPPRIS P3 TSL 2 BASIC13.97□□□□□ -0.17
COL6A2P12110 KIAA0319-201ENST00000378214 6802 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
COL6A2P12110 SDR9C7-201ENST00000293502 1765 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
COL6A2P12110 GABRB2-205ENST00000517901 1779 ntTSL 5 BASIC13.97□□□□□ -0.17
COL6A2P12110 FCHSD1-209ENST00000522783 2477 ntTSL 5 BASIC13.97□□□□□ -0.17
COL6A2P12110 POMT1-201ENST00000341012 2912 ntTSL 2 BASIC13.97□□□□□ -0.17
COL6A2P12110 PHF2-203ENST00000610682 2921 ntTSL 5 BASIC13.97□□□□□ -0.17
COL6A2P12110 CRELD1-202ENST00000383811 2696 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
COL6A2P12110 AL117190.1-201ENST00000637474 1985 ntTSL 5 BASIC13.97□□□□□ -0.17
COL6A2P12110 TONSL-201ENST00000409379 4502 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
COL6A2P12110 TPO-206ENST00000382269 1155 ntTSL 5 BASIC13.97□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 39.8 ms