Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 XRRA1-207ENST00000527087 2505 ntTSL 1 (best) BASIC15□□□□□ -0.01
LIG3P49916 DOK1-202ENST00000340004 1722 ntTSL 1 (best) BASIC15□□□□□ -0.01
LIG3P49916 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC15□□□□□ -0.01
LIG3P49916 HNRNPUL1-207ENST00000595018 2794 ntTSL 2 BASIC15□□□□□ -0.01
LIG3P49916 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
LIG3P49916 ARMCX1-201ENST00000372829 2141 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
LIG3P49916 PAM-207ENST00000455264 2898 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
LIG3P49916 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC14.99□□□□□ -0.01
LIG3P49916 METAP1-201ENST00000296411 2791 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
LIG3P49916 ZNF536-201ENST00000355537 4945 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
LIG3P49916 ITGA3-201ENST00000007722 3665 ntAPPRIS ALT2 TSL 5 BASIC14.99□□□□□ -0.01
LIG3P49916 MEF2C-AS1-210ENST00000514011 1754 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
LIG3P49916 MKRN1-201ENST00000255977 3151 ntAPPRIS P3 TSL 1 (best) BASIC14.99□□□□□ -0.01
LIG3P49916 PGA5-201ENST00000312403 1519 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
LIG3P49916 TCAM1P-207ENST00000485295 1537 ntBASIC14.99□□□□□ -0.01
LIG3P49916 AC011899.2-202ENST00000438047 4302 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
LIG3P49916 RABL2A-206ENST00000409842 1979 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
LIG3P49916 MX1-218ENST00000619682 1980 ntTSL 5 BASIC14.99□□□□□ -0.01
LIG3P49916 SLC6A5-202ENST00000525748 7084 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
LIG3P49916 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC14.99□□□□□ -0.01
LIG3P49916 SH3BGR-201ENST00000333634 1251 ntAPPRIS P2 TSL 1 (best) BASIC14.99□□□□□ -0.01
LIG3P49916 MIR326-201ENST00000362220 95 ntBASIC14.99□□□□□ -0.01
LIG3P49916 FAM27C-201ENST00000377542 616 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
LIG3P49916 BUD31-202ENST00000403633 1139 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
LIG3P49916 EPDR1-203ENST00000425345 947 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
LIG3P49916 GOLGA2P4-201ENST00000441462 777 ntBASIC14.99□□□□□ -0.01
LIG3P49916 AL162457.2-202ENST00000442888 679 ntTSL 5 BASIC14.99□□□□□ -0.01
LIG3P49916 GUSBP2-202ENST00000479900 1203 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
LIG3P49916 ANAPC13-205ENST00000511751 896 ntAPPRIS P1 TSL 3 BASIC14.99□□□□□ -0.01
LIG3P49916 NDUFC1-210ENST00000539387 725 ntAPPRIS P1 TSL 2 BASIC14.99□□□□□ -0.01
LIG3P49916 AC136428.1-201ENST00000569103 349 ntAPPRIS P1 TSL 5 BASIC14.99□□□□□ -0.01
LIG3P49916 CYGB-203ENST00000589145 788 ntTSL 3 BASIC14.99□□□□□ -0.01
LIG3P49916 ZACNP1-201ENST00000612259 710 ntBASIC14.99□□□□□ -0.01
LIG3P49916 BTRC-202ENST00000370187 6134 ntAPPRIS P4 TSL 1 (best) BASIC14.99□□□□□ -0.01
LIG3P49916 AC022400.8-201ENST00000623453 3599 ntBASIC14.99□□□□□ -0.01
LIG3P49916 TMUB2-215ENST00000592825 2151 ntTSL 3 BASIC14.99□□□□□ -0.01
LIG3P49916 MPZL2-201ENST00000278937 2620 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
LIG3P49916 LARGE1-203ENST00000402320 3955 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
LIG3P49916 NEK4-202ENST00000383721 2576 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
LIG3P49916 PIK3R1-213ENST00000521657 3891 ntAPPRIS P1 TSL 5 BASIC14.99□□□□□ -0.01
LIG3P49916 KCNMA1-285ENST00000640605 3864 ntAPPRIS ALT2 TSL 5 BASIC14.99□□□□□ -0.01
LIG3P49916 AP000593.2-201ENST00000542775 1433 ntBASIC14.99□□□□□ -0.01
LIG3P49916 AL022323.5-201ENST00000624101 2059 ntBASIC14.99□□□□□ -0.01
LIG3P49916 SAMD4A-202ENST00000392067 6833 ntAPPRIS P1 TSL 2 BASIC14.99□□□□□ -0.01
LIG3P49916 SUCO-201ENST00000263688 5556 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
LIG3P49916 YIPF3-202ENST00000372422 1576 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
LIG3P49916 MVK-214ENST00000629016 1591 ntTSL 5 BASIC14.98□□□□□ -0.01
LIG3P49916 RAB42-201ENST00000373826 1950 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
LIG3P49916 AGAP9-201ENST00000452145 2387 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
LIG3P49916 LATS1-207ENST00000543571 7517 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
LIG3P49916 CTCFL-208ENST00000432255 2955 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
LIG3P49916 FXYD3-202ENST00000346446 1320 ntTSL 2 BASIC14.98□□□□□ -0.01
LIG3P49916 NOL9-201ENST00000377705 6649 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
LIG3P49916 AC011840.2-201ENST00000563063 1520 ntBASIC14.98□□□□□ -0.01
LIG3P49916 IKZF1-205ENST00000357364 5925 ntTSL 5 BASIC14.98□□□□□ -0.01
LIG3P49916 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC14.98□□□□□ -0.01
LIG3P49916 GGA3-214ENST00000582717 2255 ntTSL 2 BASIC14.98□□□□□ -0.01
LIG3P49916 AC020910.5-201ENST00000623668 1865 ntBASIC14.98□□□□□ -0.01
LIG3P49916 LETMD1-206ENST00000547008 1665 ntTSL 2 BASIC14.98□□□□□ -0.01
LIG3P49916 C9orf24-201ENST00000297623 1151 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
LIG3P49916 KLK1-201ENST00000301420 866 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
LIG3P49916 WDR54-201ENST00000348227 1147 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
LIG3P49916 LAMA4-203ENST00000368638 1061 ntTSL 2 BASIC14.98□□□□□ -0.01
LIG3P49916 C9orf24-205ENST00000379133 712 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
LIG3P49916 LINC01665-201ENST00000422917 1241 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
LIG3P49916 AC009908.1-201ENST00000523030 412 ntTSL 3 BASIC14.98□□□□□ -0.01
LIG3P49916 ATF7-204ENST00000548118 774 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
LIG3P49916 DERL2-202ENST00000570848 657 ntTSL 5 BASIC14.98□□□□□ -0.01
LIG3P49916 AC139099.3-201ENST00000572850 472 ntTSL 5 BASIC14.98□□□□□ -0.01
LIG3P49916 LINC00621-201ENST00000577004 1177 ntTSL 4 BASIC14.98□□□□□ -0.01
LIG3P49916 AC004637.1-201ENST00000586675 482 ntTSL 3 BASIC14.98□□□□□ -0.01
LIG3P49916 ELOF1-208ENST00000591912 899 ntTSL 5 BASIC14.98□□□□□ -0.01
LIG3P49916 AC138696.2-201ENST00000607376 223 ntBASIC14.98□□□□□ -0.01
LIG3P49916 AC091271.1-201ENST00000611877 1162 ntBASIC14.98□□□□□ -0.01
LIG3P49916 LINC00623-205ENST00000621058 767 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
LIG3P49916 AC012183.1-201ENST00000625197 499 ntBASIC14.98□□□□□ -0.01
LIG3P49916 EDDM13-208ENST00000637802 854 ntAPPRIS P1 TSL 5 BASIC14.98□□□□□ -0.01
LIG3P49916 AC099795.1-202ENST00000640492 759 ntTSL 5 BASIC14.98□□□□□ -0.01
LIG3P49916 GDPD5-209ENST00000529721 3222 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
LIG3P49916 ACTR3-201ENST00000263238 6718 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
LIG3P49916 GDAP1L1-208ENST00000617075 2645 ntTSL 5 BASIC14.98□□□□□ -0.01
LIG3P49916 MAPKAPK5-206ENST00000550735 11349 ntAPPRIS ALT1 TSL 1 (best) BASIC14.98□□□□□ -0.01
LIG3P49916 SLC5A4-201ENST00000266086 2030 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
LIG3P49916 KDM2B-215ENST00000542973 3170 ntTSL 2 BASIC14.98□□□□□ -0.01
LIG3P49916 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC14.98□□□□□ -0.01
LIG3P49916 MRPS7-201ENST00000245539 1406 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
LIG3P49916 SMAGP-203ENST00000603798 2350 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
LIG3P49916 AL022326.1-201ENST00000434516 1778 ntTSL 2 BASIC14.98□□□□□ -0.01
LIG3P49916 MSH6-214ENST00000616033 3429 ntTSL 5 BASIC14.98□□□□□ -0.01
LIG3P49916 FLAD1-207ENST00000368433 2656 ntTSL 2 BASIC14.98□□□□□ -0.01
LIG3P49916 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC14.98□□□□□ -0.01
LIG3P49916 FAM180B-201ENST00000538490 1388 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
LIG3P49916 MBP-204ENST00000382582 2281 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
LIG3P49916 AC007603.1-201ENST00000563124 2085 ntTSL 2 BASIC14.97□□□□□ -0.01
LIG3P49916 CCNE2-205ENST00000520509 3330 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
LIG3P49916 ZNF750-202ENST00000572562 1513 ntTSL 2 BASIC14.97□□□□□ -0.01
LIG3P49916 AC092143.1-201ENST00000556922 2776 ntAPPRIS P1 TSL 2 BASIC14.97□□□□□ -0.01
LIG3P49916 CREBZF-204ENST00000527447 4037 ntAPPRIS P1 BASIC14.97□□□□□ -0.01
LIG3P49916 PACSIN2-202ENST00000337959 3149 ntTSL 5 BASIC14.97□□□□□ -0.01
LIG3P49916 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 52.4 ms