Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 ZNF582-201ENST00000301310 2824 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.22
BRCA1P38398 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.22
BRCA1P38398 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.22
BRCA1P38398 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
BRCA1P38398 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
BRCA1P38398 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
BRCA1P38398 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
BRCA1P38398 PAPOLA-223ENST00000557320 3264 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
BRCA1P38398 CDK20-209ENST00000605159 1860 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
BRCA1P38398 BLOC1S6-212ENST00000566753 1996 ntTSL 2 BASIC16.39■□□□□ 0.21
BRCA1P38398 AC023157.3-201ENST00000619086 2088 ntBASIC16.39■□□□□ 0.21
BRCA1P38398 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC16.39■□□□□ 0.21
BRCA1P38398 DHRS12-202ENST00000280056 1324 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
BRCA1P38398 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
BRCA1P38398 ACKR1-202ENST00000368122 1740 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
BRCA1P38398 ILK-201ENST00000299421 1802 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
BRCA1P38398 FAM124B-201ENST00000243806 2030 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
BRCA1P38398 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC16.39■□□□□ 0.21
BRCA1P38398 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC16.39■□□□□ 0.21
BRCA1P38398 MAPT-206ENST00000415613 2331 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
BRCA1P38398 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
BRCA1P38398 XPNPEP1-218ENST00000502935 2539 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
BRCA1P38398 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
BRCA1P38398 LIMS2-203ENST00000409254 867 ntTSL 3 BASIC16.39■□□□□ 0.21
BRCA1P38398 AC139795.1-201ENST00000499314 838 ntTSL 5 BASIC16.39■□□□□ 0.21
BRCA1P38398 AL136360.2-201ENST00000502636 581 ntTSL 4 BASIC16.39■□□□□ 0.21
BRCA1P38398 ROM1-205ENST00000534093 862 ntAPPRIS ALT2 TSL 2 BASIC16.39■□□□□ 0.21
BRCA1P38398 TMEM106A-201ENST00000536052 1181 ntTSL 2 BASIC16.39■□□□□ 0.21
BRCA1P38398 NDUFB1-202ENST00000553514 454 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
BRCA1P38398 EIF5A-207ENST00000572815 811 ntTSL 5 BASIC16.39■□□□□ 0.21
BRCA1P38398 AC131274.3-201ENST00000578745 1271 ntBASIC16.39■□□□□ 0.21
BRCA1P38398 AC116036.2-201ENST00000607592 462 ntBASIC16.39■□□□□ 0.21
BRCA1P38398 MAP3K14-205ENST00000617331 1049 ntTSL 5 BASIC16.39■□□□□ 0.21
BRCA1P38398 AC073592.10-201ENST00000624789 597 ntBASIC16.39■□□□□ 0.21
BRCA1P38398 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
BRCA1P38398 AL512488.1-201ENST00000433544 1671 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
BRCA1P38398 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC16.39■□□□□ 0.21
BRCA1P38398 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
BRCA1P38398 AC073347.1-201ENST00000421633 2643 ntBASIC16.39■□□□□ 0.21
BRCA1P38398 AL662899.1-201ENST00000461287 2332 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
BRCA1P38398 ZNF576-203ENST00000525771 2327 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
BRCA1P38398 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
BRCA1P38398 CDH16-201ENST00000299752 2954 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
BRCA1P38398 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
BRCA1P38398 FGD5P1-202ENST00000614866 2498 ntBASIC16.38■□□□□ 0.21
BRCA1P38398 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
BRCA1P38398 AC061965.1-201ENST00000560524 1465 ntBASIC16.38■□□□□ 0.21
BRCA1P38398 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC16.38■□□□□ 0.21
BRCA1P38398 KRBOX4-203ENST00000377919 993 ntAPPRIS ALT2 TSL 3 BASIC16.38■□□□□ 0.21
BRCA1P38398 TEDDM2P-201ENST00000414169 786 ntBASIC16.38■□□□□ 0.21
BRCA1P38398 RN7SL340P-201ENST00000470792 296 ntBASIC16.38■□□□□ 0.21
BRCA1P38398 KRT18P63-201ENST00000505463 979 ntBASIC16.38■□□□□ 0.21
BRCA1P38398 AC027277.1-201ENST00000535363 533 ntTSL 3 BASIC16.38■□□□□ 0.21
BRCA1P38398 BCAR1P1-201ENST00000553953 636 ntBASIC16.38■□□□□ 0.21
BRCA1P38398 AC010547.1-202ENST00000567341 230 ntTSL 2 BASIC16.38■□□□□ 0.21
BRCA1P38398 AC127496.5-202ENST00000572036 869 ntTSL 5 BASIC16.38■□□□□ 0.21
BRCA1P38398 MRPL34-206ENST00000602206 603 ntTSL 3 BASIC16.38■□□□□ 0.21
BRCA1P38398 U62317.4-201ENST00000609758 448 ntBASIC16.38■□□□□ 0.21
BRCA1P38398 MIR6871-201ENST00000613433 56 ntBASIC16.38■□□□□ 0.21
BRCA1P38398 AC016526.4-201ENST00000636059 517 ntTSL 3 BASIC16.38■□□□□ 0.21
BRCA1P38398 CHD1L-211ENST00000639534 1144 ntTSL 5 BASIC16.38■□□□□ 0.21
BRCA1P38398 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
BRCA1P38398 SLC26A5-201ENST00000306312 2689 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
BRCA1P38398 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC16.38■□□□□ 0.21
BRCA1P38398 ZNF397-209ENST00000591206 1516 ntTSL 2 BASIC16.38■□□□□ 0.21
BRCA1P38398 TTC8-203ENST00000346301 2058 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
BRCA1P38398 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
BRCA1P38398 POR-201ENST00000394893 2532 ntTSL 5 BASIC16.38■□□□□ 0.21
BRCA1P38398 SERPINI1-202ENST00000446050 1890 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
BRCA1P38398 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
BRCA1P38398 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
BRCA1P38398 ST3GAL3-202ENST00000330208 1479 ntTSL 5 BASIC16.38■□□□□ 0.21
BRCA1P38398 TIMP1-201ENST00000218388 892 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
BRCA1P38398 TRIM15-206ENST00000376688 426 ntTSL 5 BASIC16.37■□□□□ 0.21
BRCA1P38398 TIMP1-202ENST00000377017 626 ntTSL 2 BASIC16.37■□□□□ 0.21
BRCA1P38398 ZNF589-202ENST00000412564 593 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
BRCA1P38398 B3GALNT1-204ENST00000417187 1107 ntTSL 2 BASIC16.37■□□□□ 0.21
BRCA1P38398 AK2P2-201ENST00000439142 405 ntBASIC16.37■□□□□ 0.21
BRCA1P38398 VPS33A-202ENST00000451053 1154 ntTSL 3 BASIC16.37■□□□□ 0.21
BRCA1P38398 AP001922.5-201ENST00000527803 651 ntTSL 4 BASIC16.37■□□□□ 0.21
BRCA1P38398 KRT127P-201ENST00000547183 433 ntBASIC16.37■□□□□ 0.21
BRCA1P38398 C19orf53-202ENST00000588234 873 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
BRCA1P38398 AC100788.1-201ENST00000591108 945 ntTSL 5 BASIC16.37■□□□□ 0.21
BRCA1P38398 AL589743.3-201ENST00000604121 517 ntBASIC16.37■□□□□ 0.21
BRCA1P38398 HIST1H4K-201ENST00000611927 312 ntAPPRIS P1 BASIC16.37■□□□□ 0.21
BRCA1P38398 FRG2EP-201ENST00000634243 835 ntBASIC16.37■□□□□ 0.21
BRCA1P38398 CPPED1-203ENST00000433677 1993 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
BRCA1P38398 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
BRCA1P38398 AC027601.5-201ENST00000624065 2482 ntBASIC16.37■□□□□ 0.21
BRCA1P38398 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
BRCA1P38398 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
BRCA1P38398 TCP1-215ENST00000544255 1403 ntTSL 5 BASIC16.37■□□□□ 0.21
BRCA1P38398 SLC52A3-201ENST00000217254 2654 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
BRCA1P38398 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
BRCA1P38398 AC020763.3-201ENST00000625095 2904 ntBASIC16.37■□□□□ 0.21
BRCA1P38398 ZSCAN5B-202ENST00000586855 2059 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
BRCA1P38398 NPY5R-203ENST00000515560 3183 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
BRCA1P38398 MARK2P9-201ENST00000430958 1727 ntBASIC16.37■□□□□ 0.21
BRCA1P38398 OR2A25-203ENST00000641663 1741 ntAPPRIS P1 BASIC16.37■□□□□ 0.21
BRCA1P38398 STAM-202ENST00000377524 2972 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 69.9 ms