Protein–RNA interactions for Protein: Q96MR9

ZNF560, Zinc finger protein 560, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF560Q96MR9 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC24.12■■□□□ 1.45
ZNF560Q96MR9 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC24.11■■□□□ 1.45
ZNF560Q96MR9 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
ZNF560Q96MR9 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC24.11■■□□□ 1.45
ZNF560Q96MR9 MIR638-201ENST00000385237 100 ntBASIC24.11■■□□□ 1.45
ZNF560Q96MR9 ASB1-202ENST00000409297 878 ntTSL 5 BASIC24.11■■□□□ 1.45
ZNF560Q96MR9 AC006455.2-201ENST00000429931 906 ntBASIC24.11■■□□□ 1.45
ZNF560Q96MR9 PBX2P1-201ENST00000493219 1291 ntBASIC24.11■■□□□ 1.45
ZNF560Q96MR9 AL138724.1-201ENST00000606771 1088 ntBASIC24.11■■□□□ 1.45
ZNF560Q96MR9 AC106739.1-201ENST00000617035 715 ntBASIC24.11■■□□□ 1.45
ZNF560Q96MR9 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC24.11■■□□□ 1.45
ZNF560Q96MR9 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC24.11■■□□□ 1.45
ZNF560Q96MR9 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
ZNF560Q96MR9 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
ZNF560Q96MR9 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
ZNF560Q96MR9 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC24.1■■□□□ 1.45
ZNF560Q96MR9 SERBP1P1-201ENST00000396021 1160 ntBASIC24.1■■□□□ 1.45
ZNF560Q96MR9 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC24.1■■□□□ 1.45
ZNF560Q96MR9 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC24.1■■□□□ 1.45
ZNF560Q96MR9 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
ZNF560Q96MR9 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
ZNF560Q96MR9 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
ZNF560Q96MR9 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
ZNF560Q96MR9 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC24.09■■□□□ 1.45
ZNF560Q96MR9 AC024257.2-201ENST00000549699 147 ntBASIC24.09■■□□□ 1.45
ZNF560Q96MR9 AC133561.4-201ENST00000566112 224 ntBASIC24.09■■□□□ 1.45
ZNF560Q96MR9 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC24.09■■□□□ 1.45
ZNF560Q96MR9 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC24.09■■□□□ 1.45
ZNF560Q96MR9 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
ZNF560Q96MR9 AC144652.1-201ENST00000609974 1624 ntBASIC24.09■■□□□ 1.45
ZNF560Q96MR9 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
ZNF560Q96MR9 FP325331.1-202ENST00000623531 1380 ntBASIC24.08■■□□□ 1.45
ZNF560Q96MR9 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC24.08■■□□□ 1.45
ZNF560Q96MR9 AC011298.3-201ENST00000615796 283 ntBASIC24.08■■□□□ 1.45
ZNF560Q96MR9 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC24.08■■□□□ 1.45
ZNF560Q96MR9 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
ZNF560Q96MR9 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC24.07■■□□□ 1.44
ZNF560Q96MR9 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC24.07■■□□□ 1.44
ZNF560Q96MR9 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC24.07■■□□□ 1.44
ZNF560Q96MR9 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
ZNF560Q96MR9 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC24.07■■□□□ 1.44
ZNF560Q96MR9 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC24.07■■□□□ 1.44
ZNF560Q96MR9 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC24.07■■□□□ 1.44
ZNF560Q96MR9 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
ZNF560Q96MR9 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
ZNF560Q96MR9 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC24.07■■□□□ 1.44
ZNF560Q96MR9 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC24.07■■□□□ 1.44
ZNF560Q96MR9 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC24.07■■□□□ 1.44
ZNF560Q96MR9 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC24.07■■□□□ 1.44
ZNF560Q96MR9 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC24.06■■□□□ 1.44
ZNF560Q96MR9 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
ZNF560Q96MR9 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
ZNF560Q96MR9 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
ZNF560Q96MR9 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC24.06■■□□□ 1.44
ZNF560Q96MR9 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC24.06■■□□□ 1.44
ZNF560Q96MR9 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
ZNF560Q96MR9 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
ZNF560Q96MR9 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC24.05■■□□□ 1.44
ZNF560Q96MR9 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
ZNF560Q96MR9 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC24.05■■□□□ 1.44
ZNF560Q96MR9 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
ZNF560Q96MR9 PTMA-205ENST00000410064 814 ntTSL 2 BASIC24.04■■□□□ 1.44
ZNF560Q96MR9 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC24.04■■□□□ 1.44
ZNF560Q96MR9 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC24.04■■□□□ 1.44
ZNF560Q96MR9 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC24.04■■□□□ 1.44
ZNF560Q96MR9 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC24.04■■□□□ 1.44
ZNF560Q96MR9 pRNA.6-201ENST00000610482 90 ntBASIC24.04■■□□□ 1.44
ZNF560Q96MR9 pRNA.5-201ENST00000612139 90 ntBASIC24.04■■□□□ 1.44
ZNF560Q96MR9 pRNA.11-201ENST00000618423 90 ntBASIC24.04■■□□□ 1.44
ZNF560Q96MR9 pRNA.13-201ENST00000619112 90 ntBASIC24.04■■□□□ 1.44
ZNF560Q96MR9 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
ZNF560Q96MR9 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC24.04■■□□□ 1.44
ZNF560Q96MR9 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC24.04■■□□□ 1.44
ZNF560Q96MR9 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC24.04■■□□□ 1.44
ZNF560Q96MR9 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
ZNF560Q96MR9 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
ZNF560Q96MR9 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC24.03■■□□□ 1.44
ZNF560Q96MR9 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC24.03■■□□□ 1.44
ZNF560Q96MR9 HES6-206ENST00000409574 738 ntTSL 2 BASIC24.03■■□□□ 1.44
ZNF560Q96MR9 DUX4L4-201ENST00000566884 1269 ntBASIC24.03■■□□□ 1.44
ZNF560Q96MR9 MIR3181-201ENST00000578512 73 ntBASIC24.03■■□□□ 1.44
ZNF560Q96MR9 LINC01529-204ENST00000636474 1715 ntBASIC24.03■■□□□ 1.44
ZNF560Q96MR9 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC24.03■■□□□ 1.44
ZNF560Q96MR9 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC24.03■■□□□ 1.44
ZNF560Q96MR9 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC24.02■■□□□ 1.44
ZNF560Q96MR9 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC24.02■■□□□ 1.44
ZNF560Q96MR9 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
ZNF560Q96MR9 EDA-201ENST00000338901 1233 ntBASIC24.02■■□□□ 1.44
ZNF560Q96MR9 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC24.02■■□□□ 1.44
ZNF560Q96MR9 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC24.02■■□□□ 1.44
ZNF560Q96MR9 AC136469.2-201ENST00000623944 1028 ntBASIC24.02■■□□□ 1.44
ZNF560Q96MR9 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
ZNF560Q96MR9 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC24.02■■□□□ 1.44
ZNF560Q96MR9 AC019069.1-201ENST00000610008 1333 ntBASIC24.02■■□□□ 1.44
ZNF560Q96MR9 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
ZNF560Q96MR9 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC24.02■■□□□ 1.44
ZNF560Q96MR9 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC24.01■■□□□ 1.43
ZNF560Q96MR9 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
ZNF560Q96MR9 AC079630.1-202ENST00000618127 1840 ntBASIC24.01■■□□□ 1.43
ZNF560Q96MR9 GTSE1-AS1-202ENST00000623117 1518 ntBASIC24.01■■□□□ 1.43
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms