Protein–RNA interactions for Protein: Q7M4L6

SHF, SH2 domain-containing adapter protein F, humanhuman

Predictions only

Length 423 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHFQ7M4L6 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
SHFQ7M4L6 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SHFQ7M4L6 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SHFQ7M4L6 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SHFQ7M4L6 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC20.26■□□□□ 0.83
SHFQ7M4L6 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SHFQ7M4L6 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
SHFQ7M4L6 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SHFQ7M4L6 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
SHFQ7M4L6 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SHFQ7M4L6 AC019171.1-201ENST00000601251 1056 ntBASIC20.25■□□□□ 0.83
SHFQ7M4L6 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
SHFQ7M4L6 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SHFQ7M4L6 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
SHFQ7M4L6 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC20.25■□□□□ 0.83
SHFQ7M4L6 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SHFQ7M4L6 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SHFQ7M4L6 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC20.24■□□□□ 0.83
SHFQ7M4L6 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC20.24■□□□□ 0.83
SHFQ7M4L6 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC20.24■□□□□ 0.83
SHFQ7M4L6 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC20.24■□□□□ 0.83
SHFQ7M4L6 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
SHFQ7M4L6 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
SHFQ7M4L6 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC20.24■□□□□ 0.83
SHFQ7M4L6 WWC2-AS2-201ENST00000578387 2183 ntBASIC20.24■□□□□ 0.83
SHFQ7M4L6 EI24-204ENST00000527235 1625 ntTSL 5 BASIC20.24■□□□□ 0.83
SHFQ7M4L6 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
SHFQ7M4L6 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
SHFQ7M4L6 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SHFQ7M4L6 MTX2-204ENST00000443241 799 ntTSL 3 BASIC20.23■□□□□ 0.83
SHFQ7M4L6 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
SHFQ7M4L6 AC139795.1-202ENST00000500444 432 ntBASIC20.23■□□□□ 0.83
SHFQ7M4L6 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
SHFQ7M4L6 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SHFQ7M4L6 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
SHFQ7M4L6 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
SHFQ7M4L6 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC20.23■□□□□ 0.83
SHFQ7M4L6 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
SHFQ7M4L6 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SHFQ7M4L6 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
SHFQ7M4L6 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC20.22■□□□□ 0.83
SHFQ7M4L6 ECEL1P1-201ENST00000373592 1742 ntBASIC20.22■□□□□ 0.83
SHFQ7M4L6 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
SHFQ7M4L6 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC20.22■□□□□ 0.83
SHFQ7M4L6 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
SHFQ7M4L6 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SHFQ7M4L6 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
SHFQ7M4L6 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
SHFQ7M4L6 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SHFQ7M4L6 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
SHFQ7M4L6 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
SHFQ7M4L6 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
SHFQ7M4L6 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC20.22■□□□□ 0.83
SHFQ7M4L6 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SHFQ7M4L6 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SHFQ7M4L6 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
SHFQ7M4L6 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
SHFQ7M4L6 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
SHFQ7M4L6 EFS-203ENST00000429593 2610 ntTSL 2 BASIC20.22■□□□□ 0.83
SHFQ7M4L6 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC20.21■□□□□ 0.83
SHFQ7M4L6 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
SHFQ7M4L6 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SHFQ7M4L6 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
SHFQ7M4L6 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
SHFQ7M4L6 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SHFQ7M4L6 STK32C-205ENST00000456004 607 ntTSL 2 BASIC20.21■□□□□ 0.83
SHFQ7M4L6 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
SHFQ7M4L6 ABHD17AP5-201ENST00000580133 923 ntBASIC20.21■□□□□ 0.83
SHFQ7M4L6 AC131274.2-201ENST00000580697 1507 ntBASIC20.21■□□□□ 0.83
SHFQ7M4L6 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
SHFQ7M4L6 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
SHFQ7M4L6 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
SHFQ7M4L6 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SHFQ7M4L6 ALDH1A3-203ENST00000557963 1670 ntBASIC20.2■□□□□ 0.82
SHFQ7M4L6 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC20.2■□□□□ 0.82
SHFQ7M4L6 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SHFQ7M4L6 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SHFQ7M4L6 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
SHFQ7M4L6 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SHFQ7M4L6 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SHFQ7M4L6 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SHFQ7M4L6 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
SHFQ7M4L6 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC20.2■□□□□ 0.82
SHFQ7M4L6 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC20.2■□□□□ 0.82
SHFQ7M4L6 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
SHFQ7M4L6 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
SHFQ7M4L6 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SHFQ7M4L6 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
SHFQ7M4L6 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC20.19■□□□□ 0.82
SHFQ7M4L6 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
SHFQ7M4L6 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SHFQ7M4L6 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
SHFQ7M4L6 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC20.19■□□□□ 0.82
SHFQ7M4L6 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SHFQ7M4L6 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
SHFQ7M4L6 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
SHFQ7M4L6 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC20.19■□□□□ 0.82
SHFQ7M4L6 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
SHFQ7M4L6 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC20.19■□□□□ 0.82
SHFQ7M4L6 BRD4-212ENST00000630599 726 ntTSL 2 BASIC20.19■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 39.2 ms