Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC21.57■■□□□ 1.04
COL28A1Q2UY09 EMC9-206ENST00000560403 872 ntTSL 2 BASIC21.57■■□□□ 1.04
COL28A1Q2UY09 AC136469.2-201ENST00000623944 1028 ntBASIC21.57■■□□□ 1.04
COL28A1Q2UY09 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
COL28A1Q2UY09 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC21.57■■□□□ 1.04
COL28A1Q2UY09 SLC6A10P-202ENST00000431994 2058 ntBASIC21.57■■□□□ 1.04
COL28A1Q2UY09 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC21.57■■□□□ 1.04
COL28A1Q2UY09 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
COL28A1Q2UY09 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
COL28A1Q2UY09 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC21.56■■□□□ 1.04
COL28A1Q2UY09 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
COL28A1Q2UY09 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC21.56■■□□□ 1.04
COL28A1Q2UY09 BX842568.3-201ENST00000418104 571 ntBASIC21.56■■□□□ 1.04
COL28A1Q2UY09 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
COL28A1Q2UY09 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC21.56■■□□□ 1.04
COL28A1Q2UY09 FOXO3B-201ENST00000395675 1928 ntBASIC21.56■■□□□ 1.04
COL28A1Q2UY09 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
COL28A1Q2UY09 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
COL28A1Q2UY09 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC21.56■■□□□ 1.04
COL28A1Q2UY09 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC21.55■■□□□ 1.04
COL28A1Q2UY09 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
COL28A1Q2UY09 NTF6G-201ENST00000591094 616 ntBASIC21.55■■□□□ 1.04
COL28A1Q2UY09 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC21.55■■□□□ 1.04
COL28A1Q2UY09 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
COL28A1Q2UY09 RARA-203ENST00000394086 2008 ntTSL 2 BASIC21.55■■□□□ 1.04
COL28A1Q2UY09 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC21.55■■□□□ 1.04
COL28A1Q2UY09 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC21.54■■□□□ 1.04
COL28A1Q2UY09 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC21.54■■□□□ 1.04
COL28A1Q2UY09 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC21.54■■□□□ 1.04
COL28A1Q2UY09 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC21.54■■□□□ 1.04
COL28A1Q2UY09 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC21.54■■□□□ 1.04
COL28A1Q2UY09 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC21.54■■□□□ 1.04
COL28A1Q2UY09 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC21.54■■□□□ 1.04
COL28A1Q2UY09 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC21.54■■□□□ 1.04
COL28A1Q2UY09 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC21.54■■□□□ 1.04
COL28A1Q2UY09 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC21.54■■□□□ 1.04
COL28A1Q2UY09 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC21.54■■□□□ 1.04
COL28A1Q2UY09 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
COL28A1Q2UY09 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
COL28A1Q2UY09 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
COL28A1Q2UY09 AC123595.1-201ENST00000440769 1046 ntBASIC21.53■■□□□ 1.04
COL28A1Q2UY09 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
COL28A1Q2UY09 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC21.53■■□□□ 1.04
COL28A1Q2UY09 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
COL28A1Q2UY09 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
COL28A1Q2UY09 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC21.52■■□□□ 1.04
COL28A1Q2UY09 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC21.52■■□□□ 1.04
COL28A1Q2UY09 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
COL28A1Q2UY09 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC21.52■■□□□ 1.04
COL28A1Q2UY09 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC21.52■■□□□ 1.04
COL28A1Q2UY09 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
COL28A1Q2UY09 ME3-201ENST00000323418 1068 ntTSL 5 BASIC21.52■■□□□ 1.04
COL28A1Q2UY09 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC21.52■■□□□ 1.04
COL28A1Q2UY09 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
COL28A1Q2UY09 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
COL28A1Q2UY09 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC21.52■■□□□ 1.04
COL28A1Q2UY09 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
COL28A1Q2UY09 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
COL28A1Q2UY09 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
COL28A1Q2UY09 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
COL28A1Q2UY09 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
COL28A1Q2UY09 AC027612.3-201ENST00000413684 1047 ntBASIC21.51■■□□□ 1.03
COL28A1Q2UY09 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC21.51■■□□□ 1.03
COL28A1Q2UY09 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
COL28A1Q2UY09 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
COL28A1Q2UY09 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
COL28A1Q2UY09 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC21.51■■□□□ 1.03
COL28A1Q2UY09 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC21.5■■□□□ 1.03
COL28A1Q2UY09 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
COL28A1Q2UY09 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC21.5■■□□□ 1.03
COL28A1Q2UY09 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
COL28A1Q2UY09 AC090877.2-201ENST00000558441 1738 ntBASIC21.5■■□□□ 1.03
COL28A1Q2UY09 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
COL28A1Q2UY09 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC21.5■■□□□ 1.03
COL28A1Q2UY09 AC080038.1-201ENST00000611274 1154 ntBASIC21.5■■□□□ 1.03
COL28A1Q2UY09 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
COL28A1Q2UY09 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC21.5■■□□□ 1.03
COL28A1Q2UY09 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC21.5■■□□□ 1.03
COL28A1Q2UY09 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
COL28A1Q2UY09 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC21.5■■□□□ 1.03
COL28A1Q2UY09 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
COL28A1Q2UY09 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
COL28A1Q2UY09 AC022211.4-201ENST00000625094 2161 ntBASIC21.5■■□□□ 1.03
COL28A1Q2UY09 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
COL28A1Q2UY09 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
COL28A1Q2UY09 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC21.49■■□□□ 1.03
COL28A1Q2UY09 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
COL28A1Q2UY09 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
COL28A1Q2UY09 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
COL28A1Q2UY09 CCDC92B-201ENST00000575506 885 ntBASIC21.49■■□□□ 1.03
COL28A1Q2UY09 AC126544.1-201ENST00000580842 1059 ntBASIC21.49■■□□□ 1.03
COL28A1Q2UY09 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC21.49■■□□□ 1.03
COL28A1Q2UY09 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
COL28A1Q2UY09 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC21.49■■□□□ 1.03
COL28A1Q2UY09 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
COL28A1Q2UY09 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
COL28A1Q2UY09 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC21.49■■□□□ 1.03
COL28A1Q2UY09 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC21.49■■□□□ 1.03
COL28A1Q2UY09 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
COL28A1Q2UY09 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 104.2 ms