Protein–RNA interactions for Protein: Q95604

HLA-C, HLA class I histocompatibility antigen, Cw-17 alpha chain, humanhuman

Predictions only

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-CQ95604 SLC26A11-202ENST00000411502 2872 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
HLA-CQ95604 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
HLA-CQ95604 AC026271.1-201ENST00000447794 1348 ntBASIC14.39□□□□□ -0.11
HLA-CQ95604 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
HLA-CQ95604 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC14.39□□□□□ -0.11
HLA-CQ95604 ALDOA-209ENST00000563060 1550 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
HLA-CQ95604 AL139158.3-201ENST00000641212 1562 ntBASIC14.39□□□□□ -0.11
HLA-CQ95604 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
HLA-CQ95604 SHISA9-201ENST00000423335 4043 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
HLA-CQ95604 XRN1-203ENST00000463916 2075 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
HLA-CQ95604 ST7L-202ENST00000358039 4528 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
HLA-CQ95604 ELMSAN1-201ENST00000286523 8091 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
HLA-CQ95604 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC14.38□□□□□ -0.11
HLA-CQ95604 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
HLA-CQ95604 KRT8P25-201ENST00000473150 1456 ntBASIC14.38□□□□□ -0.11
HLA-CQ95604 PHTF2-204ENST00000415251 1738 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
HLA-CQ95604 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
HLA-CQ95604 PAK4-208ENST00000599386 5735 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
HLA-CQ95604 TRMT11-202ENST00000368332 1889 ntAPPRIS ALT1 TSL 2 BASIC14.38□□□□□ -0.11
HLA-CQ95604 PPP1R26-204ENST00000604351 4640 ntAPPRIS P1 TSL 3 BASIC14.38□□□□□ -0.11
HLA-CQ95604 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
HLA-CQ95604 PPP1R32-201ENST00000338608 1535 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
HLA-CQ95604 CHEK2-203ENST00000382565 696 ntTSL 5 BASIC14.38□□□□□ -0.11
HLA-CQ95604 PPP1R2P10-201ENST00000393023 595 ntBASIC14.38□□□□□ -0.11
HLA-CQ95604 U3.41-201ENST00000408711 219 ntBASIC14.38□□□□□ -0.11
HLA-CQ95604 HMGA1P1-201ENST00000415560 1062 ntBASIC14.38□□□□□ -0.11
HLA-CQ95604 AC003986.3-201ENST00000417460 692 ntTSL 3 BASIC14.38□□□□□ -0.11
HLA-CQ95604 AL162151.1-201ENST00000423922 561 ntTSL 4 BASIC14.38□□□□□ -0.11
HLA-CQ95604 RPL38-202ENST00000439590 431 ntAPPRIS P2 TSL 2 BASIC14.38□□□□□ -0.11
HLA-CQ95604 AC005042.2-201ENST00000449526 510 ntTSL 4 BASIC14.38□□□□□ -0.11
HLA-CQ95604 AL021391.1-201ENST00000454439 545 ntTSL 4 BASIC14.38□□□□□ -0.11
HLA-CQ95604 KRT18P15-201ENST00000458108 1291 ntBASIC14.38□□□□□ -0.11
HLA-CQ95604 ALDOAP1-201ENST00000491506 1078 ntBASIC14.38□□□□□ -0.11
HLA-CQ95604 RN7SL87P-201ENST00000497657 288 ntBASIC14.38□□□□□ -0.11
HLA-CQ95604 PRSS55-203ENST00000522210 1005 ntTSL 2 BASIC14.38□□□□□ -0.11
HLA-CQ95604 HNRNPA1P72-201ENST00000529511 967 ntBASIC14.38□□□□□ -0.11
HLA-CQ95604 BCL2L2-PABPN1-201ENST00000553781 1241 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
HLA-CQ95604 RBMX-209ENST00000565438 1292 ntTSL 5 BASIC14.38□□□□□ -0.11
HLA-CQ95604 AC092720.1-202ENST00000565824 555 ntTSL 4 BASIC14.38□□□□□ -0.11
HLA-CQ95604 CRABP2-204ENST00000621784 1033 ntAPPRIS P1 TSL 3 BASIC14.38□□□□□ -0.11
HLA-CQ95604 GARS-210ENST00000627489 324 ntTSL 4 BASIC14.38□□□□□ -0.11
HLA-CQ95604 SIRT2-202ENST00000358931 1912 ntTSL 5 BASIC14.38□□□□□ -0.11
HLA-CQ95604 DNAI1-209ENST00000614641 2598 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
HLA-CQ95604 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC14.38□□□□□ -0.11
HLA-CQ95604 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
HLA-CQ95604 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC14.38□□□□□ -0.11
HLA-CQ95604 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
HLA-CQ95604 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
HLA-CQ95604 TGM1-202ENST00000544573 1581 ntTSL 2 BASIC14.38□□□□□ -0.11
HLA-CQ95604 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
HLA-CQ95604 TMEM74B-201ENST00000381894 1730 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
HLA-CQ95604 AL031590.1-202ENST00000641466 1737 ntBASIC14.38□□□□□ -0.11
HLA-CQ95604 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
HLA-CQ95604 INTS11-248ENST00000545578 2263 ntTSL 2 BASIC14.38□□□□□ -0.11
HLA-CQ95604 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC14.38□□□□□ -0.11
HLA-CQ95604 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC14.37□□□□□ -0.11
HLA-CQ95604 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
HLA-CQ95604 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC14.37□□□□□ -0.11
HLA-CQ95604 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
HLA-CQ95604 TGM6-202ENST00000381423 2158 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
HLA-CQ95604 ANKRD26P3-201ENST00000454044 2748 ntBASIC14.37□□□□□ -0.11
HLA-CQ95604 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC14.37□□□□□ -0.11
HLA-CQ95604 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
HLA-CQ95604 MPZL3-204ENST00000527472 1381 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
HLA-CQ95604 DDX21-202ENST00000620315 4829 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
HLA-CQ95604 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
HLA-CQ95604 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
HLA-CQ95604 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
HLA-CQ95604 ABLIM2-209ENST00000505872 1680 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
HLA-CQ95604 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC14.37□□□□□ -0.11
HLA-CQ95604 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC14.37□□□□□ -0.11
HLA-CQ95604 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
HLA-CQ95604 AL591499.1-201ENST00000307155 1153 ntBASIC14.37□□□□□ -0.11
HLA-CQ95604 HIGD2B-201ENST00000311755 1116 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
HLA-CQ95604 MRPL55-209ENST00000366735 1212 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
HLA-CQ95604 VGLL1-201ENST00000370634 1215 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
HLA-CQ95604 NPPA-202ENST00000376480 855 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
HLA-CQ95604 MKL1-204ENST00000402630 747 ntTSL 2 BASIC14.37□□□□□ -0.11
HLA-CQ95604 NOS2P3-201ENST00000411468 867 ntBASIC14.37□□□□□ -0.11
HLA-CQ95604 TUBB8P9-201ENST00000422534 1276 ntBASIC14.37□□□□□ -0.11
HLA-CQ95604 HLA-DQB3-203ENST00000425319 356 ntBASIC14.37□□□□□ -0.11
HLA-CQ95604 NOS2P2-201ENST00000426269 867 ntBASIC14.37□□□□□ -0.11
HLA-CQ95604 TUBB8P10-201ENST00000430210 1279 ntBASIC14.37□□□□□ -0.11
HLA-CQ95604 FAM157A-201ENST00000437428 1141 ntTSL 3 BASIC14.37□□□□□ -0.11
HLA-CQ95604 AC007881.1-201ENST00000437460 187 ntBASIC14.37□□□□□ -0.11
HLA-CQ95604 FAM237A-201ENST00000441223 773 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
HLA-CQ95604 NDUFB2P1-201ENST00000506966 295 ntBASIC14.37□□□□□ -0.11
HLA-CQ95604 AC090833.1-202ENST00000511073 781 ntTSL 3 BASIC14.37□□□□□ -0.11
HLA-CQ95604 GOLT1B-206ENST00000542038 933 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
HLA-CQ95604 AC126177.4-201ENST00000547452 731 ntTSL 5 BASIC14.37□□□□□ -0.11
HLA-CQ95604 PEX11A-204ENST00000561224 529 ntTSL 4 BASIC14.37□□□□□ -0.11
HLA-CQ95604 AC007610.1-201ENST00000568130 498 ntTSL 3 BASIC14.37□□□□□ -0.11
HLA-CQ95604 GACAT2-201ENST00000579368 818 ntTSL 2 BASIC14.37□□□□□ -0.11
HLA-CQ95604 RN7SL202P-201ENST00000584410 262 ntBASIC14.37□□□□□ -0.11
HLA-CQ95604 SMIM22-207ENST00000589721 822 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
HLA-CQ95604 AC006547.1-209ENST00000596334 996 ntTSL 5 BASIC14.37□□□□□ -0.11
HLA-CQ95604 PLA2G4C-AS1-203ENST00000601950 454 ntTSL 3 BASIC14.37□□□□□ -0.11
HLA-CQ95604 NPPA-203ENST00000610706 849 ntAPPRIS ALT1 TSL 5 BASIC14.37□□□□□ -0.11
HLA-CQ95604 AC137723.2-201ENST00000623540 398 ntBASIC14.37□□□□□ -0.11
HLA-CQ95604 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 50.4 ms