Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 ABLIM2-215ENST00000545242 1972 ntAPPRIS ALT2 TSL 5 BASIC13.17□□□□□ -0.3
COL5A1P20908 ZNF570-202ENST00000586475 1985 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
COL5A1P20908 PREP-201ENST00000369110 2905 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
COL5A1P20908 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
COL5A1P20908 PLEKHG6-201ENST00000011684 2881 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
COL5A1P20908 C9orf3-202ENST00000297979 2820 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
COL5A1P20908 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
COL5A1P20908 OR2A25-202ENST00000641441 1733 ntAPPRIS P1 BASIC13.17□□□□□ -0.3
COL5A1P20908 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC13.17□□□□□ -0.3
COL5A1P20908 BAIAP2-220ENST00000575712 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
COL5A1P20908 CASP8-212ENST00000432109 1629 ntAPPRIS P4 TSL 5 BASIC13.17□□□□□ -0.3
COL5A1P20908 PTN-202ENST00000393083 1599 ntTSL 5 BASIC13.17□□□□□ -0.3
COL5A1P20908 ELAC2-201ENST00000338034 3148 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
COL5A1P20908 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC13.17□□□□□ -0.3
COL5A1P20908 AL021395.1-201ENST00000611791 2232 ntTSL 5 BASIC13.17□□□□□ -0.3
COL5A1P20908 PSMC5-212ENST00000581882 1474 ntTSL 5 BASIC13.17□□□□□ -0.3
COL5A1P20908 C22orf42-201ENST00000382097 1363 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
COL5A1P20908 RNF123-202ENST00000432042 2670 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
COL5A1P20908 PRKAB1-201ENST00000229328 2610 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
COL5A1P20908 PRKACB-205ENST00000370688 1905 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
COL5A1P20908 LINC02026-202ENST00000414309 772 ntTSL 3 BASIC13.17□□□□□ -0.3
COL5A1P20908 AC002127.2-201ENST00000444032 792 ntTSL 3 BASIC13.17□□□□□ -0.3
COL5A1P20908 AL161668.2-201ENST00000531638 492 ntTSL 5 BASIC13.17□□□□□ -0.3
COL5A1P20908 AC010202.1-201ENST00000551181 405 ntBASIC13.17□□□□□ -0.3
COL5A1P20908 KRT18P8-201ENST00000581937 1246 ntBASIC13.17□□□□□ -0.3
COL5A1P20908 TNFRSF10A-204ENST00000613472 978 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
COL5A1P20908 AC008622.3-201ENST00000621170 600 ntBASIC13.17□□□□□ -0.3
COL5A1P20908 ZNF362-205ENST00000539719 3106 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
COL5A1P20908 CA2-201ENST00000285379 1717 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
COL5A1P20908 NAXD-201ENST00000309957 2659 ntAPPRIS P1 TSL 2 BASIC13.17□□□□□ -0.3
COL5A1P20908 NPY5R-203ENST00000515560 3183 ntAPPRIS P1 TSL 2 BASIC13.17□□□□□ -0.3
COL5A1P20908 DLG2-205ENST00000398301 2070 ntTSL 2 BASIC13.17□□□□□ -0.3
COL5A1P20908 AL513497.1-201ENST00000624273 2083 ntBASIC13.17□□□□□ -0.3
COL5A1P20908 TMCO3-202ENST00000434316 3050 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
COL5A1P20908 PAX5-204ENST00000377852 1472 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
COL5A1P20908 ADORA1-201ENST00000309502 2896 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
COL5A1P20908 NAAA-203ENST00000505594 1425 ntAPPRIS ALT2 TSL 2 BASIC13.16□□□□□ -0.3
COL5A1P20908 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
COL5A1P20908 WSCD1-202ENST00000539421 2665 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
COL5A1P20908 HMOX2-216ENST00000613539 1703 ntTSL 5 BASIC13.16□□□□□ -0.3
COL5A1P20908 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
COL5A1P20908 TAC4-203ENST00000352793 564 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
COL5A1P20908 BCL2L11-203ENST00000357757 947 ntTSL 5 BASIC13.16□□□□□ -0.3
COL5A1P20908 MIR339-201ENST00000362153 94 ntBASIC13.16□□□□□ -0.3
COL5A1P20908 AL031587.2-201ENST00000445483 414 ntTSL 5 BASIC13.16□□□□□ -0.3
COL5A1P20908 Z82249.1-201ENST00000453866 568 ntTSL 4 BASIC13.16□□□□□ -0.3
COL5A1P20908 LY6E-215ENST00000523847 427 ntTSL 3 BASIC13.16□□□□□ -0.3
COL5A1P20908 RN7SL440P-201ENST00000577855 343 ntBASIC13.16□□□□□ -0.3
COL5A1P20908 MIR6125-201ENST00000618986 96 ntBASIC13.16□□□□□ -0.3
COL5A1P20908 SNORA50D-202ENST00000627561 132 ntBASIC13.16□□□□□ -0.3
COL5A1P20908 FGFR3-203ENST00000352904 3733 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
COL5A1P20908 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
COL5A1P20908 GPR84-202ENST00000551809 2041 ntAPPRIS P1 BASIC13.16□□□□□ -0.3
COL5A1P20908 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC13.16□□□□□ -0.3
COL5A1P20908 ZDHHC8-201ENST00000320602 3072 ntTSL 5 BASIC13.16□□□□□ -0.3
COL5A1P20908 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
COL5A1P20908 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC13.16□□□□□ -0.3
COL5A1P20908 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
COL5A1P20908 AC099548.2-204ENST00000481651 2106 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
COL5A1P20908 CAMKV-202ENST00000463537 2818 ntTSL 5 BASIC13.16□□□□□ -0.3
COL5A1P20908 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
COL5A1P20908 DMTN-206ENST00000443491 2415 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
COL5A1P20908 CWC27-201ENST00000381070 2078 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
COL5A1P20908 GPNMB-203ENST00000409458 1673 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
COL5A1P20908 MKRN2-203ENST00000448482 1679 ntTSL 5 BASIC13.16□□□□□ -0.3
COL5A1P20908 AQP1-201ENST00000311813 2913 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
COL5A1P20908 LINC00667-206ENST00000582363 2935 ntTSL 2 BASIC13.16□□□□□ -0.3
COL5A1P20908 CHN2-201ENST00000222792 3530 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
COL5A1P20908 CELA3A-201ENST00000290122 887 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
COL5A1P20908 NR2C2AP-201ENST00000331552 1293 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
COL5A1P20908 RPLP1-202ENST00000357790 445 ntTSL 2 BASIC13.16□□□□□ -0.3
COL5A1P20908 KRTAP12-2-201ENST00000360770 739 ntAPPRIS P1 BASIC13.16□□□□□ -0.3
COL5A1P20908 RBP4-203ENST00000371469 814 ntTSL 5 BASIC13.16□□□□□ -0.3
COL5A1P20908 CMTM5-204ENST00000382809 378 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
COL5A1P20908 SUMO1-206ENST00000409368 1187 ntTSL 4 BASIC13.16□□□□□ -0.3
COL5A1P20908 LINC01885-201ENST00000414300 609 ntTSL 4 BASIC13.16□□□□□ -0.3
COL5A1P20908 NR2C2AP-202ENST00000420605 859 ntTSL 2 BASIC13.16□□□□□ -0.3
COL5A1P20908 PLA2G1B-202ENST00000423423 423 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
COL5A1P20908 RN7SL846P-201ENST00000467429 292 ntBASIC13.16□□□□□ -0.3
COL5A1P20908 CDK7-211ENST00000514676 1164 ntTSL 5 BASIC13.16□□□□□ -0.3
COL5A1P20908 RNA5SP288-201ENST00000516075 93 ntBASIC13.16□□□□□ -0.3
COL5A1P20908 PHBP18-201ENST00000546648 813 ntBASIC13.16□□□□□ -0.3
COL5A1P20908 KCCAT198-201ENST00000549251 549 ntTSL 4 BASIC13.16□□□□□ -0.3
COL5A1P20908 ADSSL1-208ENST00000555674 520 ntTSL 3 BASIC13.16□□□□□ -0.3
COL5A1P20908 AC104590.1-201ENST00000560813 648 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
COL5A1P20908 ABCC6P1-203ENST00000565566 1170 ntBASIC13.16□□□□□ -0.3
COL5A1P20908 MIR3940-201ENST00000579148 102 ntBASIC13.16□□□□□ -0.3
COL5A1P20908 RN7SL162P-201ENST00000579233 292 ntBASIC13.16□□□□□ -0.3
COL5A1P20908 AL356740.1-201ENST00000602192 1297 ntBASIC13.16□□□□□ -0.3
COL5A1P20908 AC004466.2-201ENST00000614749 516 ntBASIC13.16□□□□□ -0.3
COL5A1P20908 AC009041.4-201ENST00000620075 638 ntBASIC13.16□□□□□ -0.3
COL5A1P20908 TMEM211-203ENST00000640159 1122 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
COL5A1P20908 RNF121-211ENST00000530137 2202 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
COL5A1P20908 PIGS-203ENST00000395346 2815 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
COL5A1P20908 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
COL5A1P20908 PLCXD2-201ENST00000393934 2063 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
COL5A1P20908 NR1H4-203ENST00000392986 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC13.15□□□□□ -0.3
COL5A1P20908 SIRT5-203ENST00000379262 2339 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
COL5A1P20908 MST1P2-201ENST00000457982 2291 ntBASIC13.15□□□□□ -0.3
COL5A1P20908 EVL-201ENST00000392920 1978 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 54.3 ms