Protein–RNA interactions for Protein: P12004

PCNA, Proliferating cell nuclear antigen, humanhuman

Predictions only

Length 261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCNAP12004 AC092800.1-201ENST00000449492 579 ntTSL 2 BASIC13.91□□□□□ -0.18
PCNAP12004 Z93015.1-201ENST00000451718 390 ntBASIC13.91□□□□□ -0.18
PCNAP12004 AC021723.1-201ENST00000486306 515 ntBASIC13.91□□□□□ -0.18
PCNAP12004 RANGRF-205ENST00000580434 749 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
PCNAP12004 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC13.91□□□□□ -0.18
PCNAP12004 KLK3-207ENST00000595952 969 ntTSL 3 BASIC13.91□□□□□ -0.18
PCNAP12004 NCR1-206ENST00000598576 996 ntAPPRIS ALT2 TSL 5 BASIC13.91□□□□□ -0.18
PCNAP12004 OCEL1-213ENST00000601529 942 ntTSL 3 BASIC13.91□□□□□ -0.18
PCNAP12004 PRRC2B-210ENST00000638390 1084 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
PCNAP12004 AC079325.2-202ENST00000641031 462 ntAPPRIS ALT2 BASIC13.91□□□□□ -0.18
PCNAP12004 Z98259.2-201ENST00000641583 609 ntBASIC13.91□□□□□ -0.18
PCNAP12004 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC13.91□□□□□ -0.18
PCNAP12004 CCT7-201ENST00000258091 1916 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
PCNAP12004 SLC6A9-203ENST00000372306 1926 ntTSL 2 BASIC13.91□□□□□ -0.18
PCNAP12004 PRG2-202ENST00000525955 1367 ntAPPRIS P3 TSL 2 BASIC13.91□□□□□ -0.18
PCNAP12004 NSD2-204ENST00000382891 7534 ntAPPRIS P1 TSL 5 BASIC13.91□□□□□ -0.18
PCNAP12004 ANKMY1-206ENST00000401804 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
PCNAP12004 CSNK1A1P1-201ENST00000430593 2147 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
PCNAP12004 MARVELD2-203ENST00000436532 1563 ntTSL 5 BASIC13.91□□□□□ -0.18
PCNAP12004 TRDMT1-203ENST00000377799 3527 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
PCNAP12004 DENND3-211ENST00000519811 5482 ntAPPRIS ALT2 TSL 5 BASIC13.91□□□□□ -0.18
PCNAP12004 RGS22-201ENST00000360863 4296 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
PCNAP12004 SGMS1-203ENST00000429490 3634 ntTSL 5 BASIC13.91□□□□□ -0.18
PCNAP12004 SFMBT2-203ENST00000379713 2402 ntTSL 2 BASIC13.91□□□□□ -0.18
PCNAP12004 DISP3-201ENST00000294484 5215 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
PCNAP12004 CLN8-204ENST00000519254 1769 ntAPPRIS P1 TSL 5 BASIC13.91□□□□□ -0.18
PCNAP12004 SLC6A2-205ENST00000566163 1759 ntTSL 5 BASIC13.91□□□□□ -0.18
PCNAP12004 GAB2-202ENST00000361507 6092 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
PCNAP12004 PSG4-203ENST00000433626 1887 ntTSL 2 BASIC13.91□□□□□ -0.18
PCNAP12004 AC073548.1-201ENST00000624088 1882 ntBASIC13.91□□□□□ -0.18
PCNAP12004 ESPNL-202ENST00000409169 4441 ntTSL 5 BASIC13.91□□□□□ -0.18
PCNAP12004 PRC1-204ENST00000442656 2060 ntTSL 2 BASIC13.91□□□□□ -0.18
PCNAP12004 BEAN1-201ENST00000299694 2160 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
PCNAP12004 HK2-201ENST00000290573 5772 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
PCNAP12004 NOTCH1-201ENST00000277541 9371 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
PCNAP12004 SGCE-204ENST00000428696 1409 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
PCNAP12004 KIR3DL2-201ENST00000270442 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
PCNAP12004 RCHY1-202ENST00000380840 1735 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
PCNAP12004 APOF-201ENST00000398189 1715 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
PCNAP12004 CROT-203ENST00000419147 2959 ntTSL 2 BASIC13.9□□□□□ -0.18
PCNAP12004 ABI2-201ENST00000261016 6634 ntTSL 2 BASIC13.9□□□□□ -0.18
PCNAP12004 ABI2-203ENST00000261018 6638 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
PCNAP12004 PRKAR1A-203ENST00000392711 4327 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
PCNAP12004 POU2AF1-201ENST00000393067 3295 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
PCNAP12004 AGAP10P-201ENST00000454844 2418 ntBASIC13.9□□□□□ -0.18
PCNAP12004 AC020658.7-201ENST00000624274 2442 ntBASIC13.9□□□□□ -0.18
PCNAP12004 RCAN3-207ENST00000538532 2640 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
PCNAP12004 PPFIA4-204ENST00000447715 6349 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
PCNAP12004 IGF2BP1-201ENST00000290341 8274 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
PCNAP12004 HIC2-203ENST00000443632 6940 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
PCNAP12004 DGKD-201ENST00000264057 6297 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.18
PCNAP12004 AC211486.1-201ENST00000275590 980 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
PCNAP12004 OR8S1-201ENST00000310194 1080 ntBASIC13.9□□□□□ -0.18
PCNAP12004 ZNF248-202ENST00000374648 1286 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
PCNAP12004 PRTFDC1-202ENST00000376376 741 ntTSL 2 BASIC13.9□□□□□ -0.18
PCNAP12004 PRKG1-AS1-201ENST00000420193 971 ntTSL 3 BASIC13.9□□□□□ -0.18
PCNAP12004 FAM58BP-201ENST00000439056 645 ntBASIC13.9□□□□□ -0.18
PCNAP12004 ATP5G2P4-201ENST00000442175 420 ntBASIC13.9□□□□□ -0.18
PCNAP12004 C8orf37-AS1-202ENST00000517655 562 ntTSL 4 BASIC13.9□□□□□ -0.18
PCNAP12004 PAX5-211ENST00000522003 1019 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
PCNAP12004 LINC01848-201ENST00000523446 518 ntTSL 3 BASIC13.9□□□□□ -0.18
PCNAP12004 FAM167A-AS1-202ENST00000533578 1222 ntTSL 2 BASIC13.9□□□□□ -0.18
PCNAP12004 EEF1AKMT3-204ENST00000551420 836 ntTSL 2 BASIC13.9□□□□□ -0.18
PCNAP12004 ZNF385A-213ENST00000551771 1111 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
PCNAP12004 RN7SL560P-201ENST00000577943 264 ntBASIC13.9□□□□□ -0.18
PCNAP12004 ZNF347-208ENST00000601804 496 ntTSL 4 BASIC13.9□□□□□ -0.18
PCNAP12004 MYBBP1A-201ENST00000254718 4807 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.18
PCNAP12004 PPT2-245ENST00000361568 1759 ntAPPRIS P4 TSL 1 (best) BASIC13.9□□□□□ -0.18
PCNAP12004 AC022007.1-201ENST00000383808 1897 ntTSL 2 BASIC13.9□□□□□ -0.18
PCNAP12004 TAGLN-207ENST00000532870 2166 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
PCNAP12004 AFAP1-203ENST00000382543 2590 ntAPPRIS ALT1 TSL 5 BASIC13.9□□□□□ -0.18
PCNAP12004 NUDT3-201ENST00000607016 9905 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
PCNAP12004 PROKR1-201ENST00000303786 4273 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
PCNAP12004 ZNF335-201ENST00000322927 4430 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
PCNAP12004 NCLN-201ENST00000246117 4005 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
PCNAP12004 DSTN-201ENST00000246069 3617 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
PCNAP12004 AC239798.2-201ENST00000415338 3540 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
PCNAP12004 MED15-204ENST00000406969 3210 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
PCNAP12004 ZBED6CL-201ENST00000343855 2933 ntAPPRIS P1 BASIC13.9□□□□□ -0.18
PCNAP12004 PNRC2-201ENST00000334351 2416 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
PCNAP12004 CLEC18B-204ENST00000617101 2321 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
PCNAP12004 ZNF77-201ENST00000314531 2002 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
PCNAP12004 NBAT1-201ENST00000566912 1940 ntTSL 2 BASIC13.9□□□□□ -0.18
PCNAP12004 NOP14-AS1-201ENST00000503709 1616 ntTSL 1 (best) BASIC13.9□□□□□ -0.19
PCNAP12004 SNAP47-203ENST00000366760 1446 ntAPPRIS ALT2 TSL 2 BASIC13.9□□□□□ -0.19
PCNAP12004 ACOT7-203ENST00000377845 1432 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.19
PCNAP12004 METTL6-201ENST00000383789 1413 ntTSL 2 BASIC13.9□□□□□ -0.19
PCNAP12004 VIPR1-202ENST00000433647 3161 ntTSL 2 BASIC13.89□□□□□ -0.19
PCNAP12004 TUNAR-201ENST00000503525 3197 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
PCNAP12004 CRY2-202ENST00000443527 4203 ntAPPRIS P2 TSL 1 (best) BASIC13.89□□□□□ -0.19
PCNAP12004 DENND1C-202ENST00000543576 2395 ntAPPRIS ALT2 TSL 2 BASIC13.89□□□□□ -0.19
PCNAP12004 POM121-205ENST00000627934 5480 ntAPPRIS P3 TSL 5 BASIC13.89□□□□□ -0.19
PCNAP12004 PKP1-203ENST00000367324 5384 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
PCNAP12004 GDPD2-204ENST00000536730 2171 ntTSL 2 BASIC13.89□□□□□ -0.19
PCNAP12004 RIN3-212ENST00000620541 3617 ntAPPRIS ALT2 TSL 5 BASIC13.89□□□□□ -0.19
PCNAP12004 GNAO1-214ENST00000638705 3529 ntAPPRIS P5 TSL 1 (best) BASIC13.89□□□□□ -0.19
PCNAP12004 DIRAS3-201ENST00000370981 1973 ntAPPRIS P1 TSL 2 BASIC13.89□□□□□ -0.19
PCNAP12004 ALAS2-202ENST00000335854 1795 ntTSL 2 BASIC13.89□□□□□ -0.19
PCNAP12004 ZFP36L2-201ENST00000282388 3696 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
PCNAP12004 CDK3-201ENST00000425876 1582 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 76.6 ms