Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 TERT-201ENST00000310581 4018 ntAPPRIS P3 TSL 1 (best) BASIC13.87□□□□□ -0.19
CCDC3Q9BQI4 MEGF8-201ENST00000251268 9549 ntAPPRIS ALT2 TSL 5 BASIC13.87□□□□□ -0.19
CCDC3Q9BQI4 APCDD1L-201ENST00000371149 3426 ntAPPRIS P2 TSL 1 (best) BASIC13.87□□□□□ -0.19
CCDC3Q9BQI4 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CCDC3Q9BQI4 SLC7A4-202ENST00000403586 2307 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CCDC3Q9BQI4 LAP3P2-201ENST00000454686 1454 ntBASIC13.87□□□□□ -0.19
CCDC3Q9BQI4 AC109460.1-201ENST00000567209 1478 ntTSL 3 BASIC13.87□□□□□ -0.19
CCDC3Q9BQI4 METTL17-201ENST00000339374 1749 ntAPPRIS P3 TSL 1 (best) BASIC13.87□□□□□ -0.19
CCDC3Q9BQI4 PAPSS2-202ENST00000456849 3856 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
CCDC3Q9BQI4 CSF2RA-219ENST00000501036 1622 ntTSL 2 BASIC13.87□□□□□ -0.19
CCDC3Q9BQI4 ZCCHC18-203ENST00000537356 2907 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
CCDC3Q9BQI4 COX14-201ENST00000317943 708 ntAPPRIS P1 TSL 2 BASIC13.87□□□□□ -0.19
CCDC3Q9BQI4 HFE-203ENST00000336625 804 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
CCDC3Q9BQI4 CMTM5-201ENST00000339180 1173 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
CCDC3Q9BQI4 MIR645-201ENST00000385283 94 ntBASIC13.87□□□□□ -0.19
CCDC3Q9BQI4 ZFAND2B-205ENST00000409319 771 ntTSL 2 BASIC13.87□□□□□ -0.19
CCDC3Q9BQI4 AL627389.1-201ENST00000413508 1182 ntBASIC13.87□□□□□ -0.19
CCDC3Q9BQI4 OR8T1P-201ENST00000421347 918 ntBASIC13.87□□□□□ -0.19
CCDC3Q9BQI4 AL512306.1-201ENST00000432698 848 ntBASIC13.87□□□□□ -0.19
CCDC3Q9BQI4 RPL13AP19-201ENST00000434320 584 ntBASIC13.87□□□□□ -0.19
CCDC3Q9BQI4 AC092638.2-201ENST00000441105 947 ntBASIC13.87□□□□□ -0.19
CCDC3Q9BQI4 AC096649.1-201ENST00000449168 497 ntTSL 3 BASIC13.87□□□□□ -0.19
CCDC3Q9BQI4 RPL18AP8-201ENST00000486071 528 ntBASIC13.87□□□□□ -0.19
CCDC3Q9BQI4 AC093627.2-201ENST00000497017 568 ntTSL 4 BASIC13.87□□□□□ -0.19
CCDC3Q9BQI4 WDYHV1-206ENST00000523356 869 ntTSL 3 BASIC13.87□□□□□ -0.19
CCDC3Q9BQI4 AC135782.2-201ENST00000562040 472 ntTSL 3 BASIC13.87□□□□□ -0.19
CCDC3Q9BQI4 HERC2P11-201ENST00000562845 725 ntBASIC13.87□□□□□ -0.19
CCDC3Q9BQI4 AC092139.2-201ENST00000563750 754 ntTSL 3 BASIC13.87□□□□□ -0.19
CCDC3Q9BQI4 AC100756.2-201ENST00000569537 736 ntBASIC13.87□□□□□ -0.19
CCDC3Q9BQI4 HIST1H2BE-201ENST00000614097 497 ntAPPRIS P1 BASIC13.87□□□□□ -0.19
CCDC3Q9BQI4 AL132780.4-201ENST00000624870 1135 ntBASIC13.87□□□□□ -0.19
CCDC3Q9BQI4 ZNF74-209ENST00000611540 3714 ntAPPRIS P2 TSL 2 BASIC13.87□□□□□ -0.19
CCDC3Q9BQI4 ASAP1-201ENST00000357668 6344 ntAPPRIS ALT2 TSL 5 BASIC13.87□□□□□ -0.19
CCDC3Q9BQI4 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC13.87□□□□□ -0.19
CCDC3Q9BQI4 IL12RB2-206ENST00000544434 3782 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
CCDC3Q9BQI4 BRD7P5-201ENST00000299197 1822 ntBASIC13.87□□□□□ -0.19
CCDC3Q9BQI4 CD3EAP-202ENST00000589804 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
CCDC3Q9BQI4 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC13.87□□□□□ -0.19
CCDC3Q9BQI4 FP565260.2-201ENST00000623476 1599 ntAPPRIS P1 TSL 3 BASIC13.87□□□□□ -0.19
CCDC3Q9BQI4 TRIM56-201ENST00000306085 10952 ntAPPRIS P2 TSL 1 (best) BASIC13.87□□□□□ -0.19
CCDC3Q9BQI4 CYB561-203ENST00000392976 3151 ntAPPRIS P1 TSL 3 BASIC13.87□□□□□ -0.19
CCDC3Q9BQI4 TEKT4P2-202ENST00000559466 1312 ntBASIC13.87□□□□□ -0.19
CCDC3Q9BQI4 C21orf58-204ENST00000397682 2941 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
CCDC3Q9BQI4 LYSMD4-204ENST00000409796 2672 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CCDC3Q9BQI4 API5-208ENST00000531273 1868 ntTSL 2 BASIC13.87□□□□□ -0.19
CCDC3Q9BQI4 SATB2-211ENST00000614512 4972 ntTSL 5 BASIC13.86□□□□□ -0.19
CCDC3Q9BQI4 SFRP4-201ENST00000436072 2966 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
CCDC3Q9BQI4 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC13.86□□□□□ -0.19
CCDC3Q9BQI4 AC021683.1-201ENST00000585798 1767 ntTSL 5 BASIC13.86□□□□□ -0.19
CCDC3Q9BQI4 LDHA-203ENST00000379412 1922 ntAPPRIS P1 TSL 2 BASIC13.86□□□□□ -0.19
CCDC3Q9BQI4 AC090502.4-201ENST00000551714 1386 ntBASIC13.86□□□□□ -0.19
CCDC3Q9BQI4 AP001267.2-201ENST00000532619 2086 ntBASIC13.86□□□□□ -0.19
CCDC3Q9BQI4 LACTB2-201ENST00000276590 1508 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
CCDC3Q9BQI4 PRR12-201ENST00000418929 6955 ntAPPRIS P2 TSL 5 BASIC13.86□□□□□ -0.19
CCDC3Q9BQI4 CNBP-201ENST00000422453 1664 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
CCDC3Q9BQI4 FOXP3-203ENST00000376207 2382 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
CCDC3Q9BQI4 SPACA9-203ENST00000372136 2536 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
CCDC3Q9BQI4 CYP20A1-203ENST00000429815 1812 ntTSL 2 BASIC13.86□□□□□ -0.19
CCDC3Q9BQI4 PRNP-201ENST00000379440 2657 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
CCDC3Q9BQI4 VDAC1-201ENST00000265333 1953 ntAPPRIS P1 TSL 2 BASIC13.86□□□□□ -0.19
CCDC3Q9BQI4 LETMD1-201ENST00000262055 2112 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
CCDC3Q9BQI4 SNRPC-202ENST00000374017 1054 ntTSL 2 BASIC13.86□□□□□ -0.19
CCDC3Q9BQI4 PDCD5-202ENST00000379316 154 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
CCDC3Q9BQI4 SMIM29-202ENST00000394990 792 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
CCDC3Q9BQI4 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC13.86□□□□□ -0.19
CCDC3Q9BQI4 AL606748.1-201ENST00000423919 655 ntTSL 3 BASIC13.86□□□□□ -0.19
CCDC3Q9BQI4 Z82198.1-201ENST00000447396 437 ntTSL 3 BASIC13.86□□□□□ -0.19
CCDC3Q9BQI4 LYPLA2P1-203ENST00000447689 696 ntBASIC13.86□□□□□ -0.19
CCDC3Q9BQI4 OR2T27-202ENST00000460972 1136 ntAPPRIS P1 BASIC13.86□□□□□ -0.19
CCDC3Q9BQI4 AC132803.1-201ENST00000504204 493 ntTSL 2 BASIC13.86□□□□□ -0.19
CCDC3Q9BQI4 CD164-210ENST00000512821 964 ntTSL 2 BASIC13.86□□□□□ -0.19
CCDC3Q9BQI4 LINC02062-201ENST00000513175 478 ntTSL 3 BASIC13.86□□□□□ -0.19
CCDC3Q9BQI4 AP000911.2-201ENST00000534330 502 ntBASIC13.86□□□□□ -0.19
CCDC3Q9BQI4 TMEM14C-205ENST00000541412 1177 ntAPPRIS P1 TSL 2 BASIC13.86□□□□□ -0.19
CCDC3Q9BQI4 ATP6V0A2-207ENST00000544833 1013 ntTSL 2 BASIC13.86□□□□□ -0.19
CCDC3Q9BQI4 CR383656.3-201ENST00000551315 183 ntBASIC13.86□□□□□ -0.19
CCDC3Q9BQI4 MAFTRR-203ENST00000567993 685 ntTSL 3 BASIC13.86□□□□□ -0.19
CCDC3Q9BQI4 SRRM2-205ENST00000570971 1132 ntTSL 2 BASIC13.86□□□□□ -0.19
CCDC3Q9BQI4 TMEM98-205ENST00000578289 806 ntTSL 3 BASIC13.86□□□□□ -0.19
CCDC3Q9BQI4 UPF3AP2-202ENST00000578315 730 ntTSL 5 BASIC13.86□□□□□ -0.19
CCDC3Q9BQI4 PDCD5-208ENST00000592786 468 ntTSL 3 BASIC13.86□□□□□ -0.19
CCDC3Q9BQI4 ASNSD1-206ENST00000607062 968 ntTSL 5 BASIC13.86□□□□□ -0.19
CCDC3Q9BQI4 AC105137.3-201ENST00000617588 984 ntBASIC13.86□□□□□ -0.19
CCDC3Q9BQI4 RPS10-207ENST00000621356 784 ntAPPRIS P1 TSL 2 BASIC13.86□□□□□ -0.19
CCDC3Q9BQI4 TMEM176B-204ENST00000447204 1430 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
CCDC3Q9BQI4 PAX7-202ENST00000400661 1700 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
CCDC3Q9BQI4 BTNL8-206ENST00000508408 1717 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
CCDC3Q9BQI4 KNSTRN-202ENST00000416151 1899 ntTSL 3 BASIC13.86□□□□□ -0.19
CCDC3Q9BQI4 GMPR2-204ENST00000420554 1864 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
CCDC3Q9BQI4 GMPR2-223ENST00000559836 1893 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
CCDC3Q9BQI4 SLC35B2-206ENST00000615337 2014 ntTSL 4 BASIC13.86□□□□□ -0.19
CCDC3Q9BQI4 SGSM1-206ENST00000610372 5991 ntTSL 5 BASIC13.86□□□□□ -0.19
CCDC3Q9BQI4 PCDHA7-201ENST00000356878 2922 ntAPPRIS ALT2 BASIC13.86□□□□□ -0.19
CCDC3Q9BQI4 SV2A-201ENST00000369145 2903 ntTSL 2 BASIC13.86□□□□□ -0.19
CCDC3Q9BQI4 TTLL10-AS1-201ENST00000379317 3532 ntTSL 2 BASIC13.86□□□□□ -0.19
CCDC3Q9BQI4 WNT5A-202ENST00000474267 6042 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
CCDC3Q9BQI4 CD59-201ENST00000351554 1775 ntAPPRIS P2 TSL 2 BASIC13.86□□□□□ -0.19
CCDC3Q9BQI4 SAMD4A-213ENST00000631086 6677 ntTSL 5 BASIC13.86□□□□□ -0.19
CCDC3Q9BQI4 PHTF1-202ENST00000369598 3000 ntTSL 5 BASIC13.85□□□□□ -0.19
CCDC3Q9BQI4 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 76.9 ms