Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 SPATA13-203ENST00000382108 8463 ntAPPRIS ALT2 TSL 5 BASIC11.94□□□□□ -0.5
PDLIM3Q53GG5 PIK3CG-205ENST00000496166 5197 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
PDLIM3Q53GG5 SLC35G5-201ENST00000382435 1321 ntAPPRIS P1 BASIC11.94□□□□□ -0.5
PDLIM3Q53GG5 C12orf76-207ENST00000549724 1302 ntTSL 5 BASIC11.94□□□□□ -0.5
PDLIM3Q53GG5 WASHC5-202ENST00000517845 3667 ntTSL 2 BASIC11.94□□□□□ -0.5
PDLIM3Q53GG5 FAM120C-202ENST00000375180 8057 ntAPPRIS P3 TSL 1 (best) BASIC11.94□□□□□ -0.5
PDLIM3Q53GG5 KIRREL3-202ENST00000525704 2474 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
PDLIM3Q53GG5 PI4KB-203ENST00000368874 3934 ntAPPRIS ALT1 TSL 1 (best) BASIC11.94□□□□□ -0.5
PDLIM3Q53GG5 CDK20-202ENST00000336654 2176 ntTSL 2 BASIC11.94□□□□□ -0.5
PDLIM3Q53GG5 AGPAT3-218ENST00000546158 2199 ntAPPRIS P1 TSL 5 BASIC11.94□□□□□ -0.5
PDLIM3Q53GG5 VDR-201ENST00000229022 4773 ntAPPRIS P1 TSL 5 BASIC11.94□□□□□ -0.5
PDLIM3Q53GG5 DTD2-201ENST00000310850 2717 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
PDLIM3Q53GG5 YIPF3-202ENST00000372422 1576 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
PDLIM3Q53GG5 RPS15-201ENST00000233609 534 ntTSL 2 BASIC11.94□□□□□ -0.5
PDLIM3Q53GG5 IER3-201ENST00000259874 1244 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
PDLIM3Q53GG5 COMMD4-201ENST00000267935 1067 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
PDLIM3Q53GG5 ELN-203ENST00000320492 2991 ntAPPRIS ALT2 TSL 2 BASIC11.94□□□□□ -0.5
PDLIM3Q53GG5 COMMD4-202ENST00000338995 722 ntTSL 2 BASIC11.94□□□□□ -0.5
PDLIM3Q53GG5 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC11.94□□□□□ -0.5
PDLIM3Q53GG5 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC11.94□□□□□ -0.5
PDLIM3Q53GG5 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC11.94□□□□□ -0.5
PDLIM3Q53GG5 MYO16-AS1-201ENST00000439299 580 ntTSL 5 BASIC11.94□□□□□ -0.5
PDLIM3Q53GG5 IGHV4-4-201ENST00000455737 417 ntAPPRIS P1 BASIC11.94□□□□□ -0.5
PDLIM3Q53GG5 AC008438.1-201ENST00000507521 549 ntTSL 2 BASIC11.94□□□□□ -0.5
PDLIM3Q53GG5 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC11.94□□□□□ -0.5
PDLIM3Q53GG5 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC11.94□□□□□ -0.5
PDLIM3Q53GG5 AC131206.1-201ENST00000538078 1211 ntBASIC11.94□□□□□ -0.5
PDLIM3Q53GG5 TRIM46-210ENST00000545012 2979 ntTSL 2 BASIC11.94□□□□□ -0.5
PDLIM3Q53GG5 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
PDLIM3Q53GG5 COMMD4-211ENST00000564815 639 ntTSL 3 BASIC11.94□□□□□ -0.5
PDLIM3Q53GG5 AC012645.3-203ENST00000567153 520 ntTSL 2 BASIC11.94□□□□□ -0.5
PDLIM3Q53GG5 AC137723.1-201ENST00000584705 709 ntTSL 3 BASIC11.94□□□□□ -0.5
PDLIM3Q53GG5 RPS15-205ENST00000586686 562 ntTSL 5 BASIC11.94□□□□□ -0.5
PDLIM3Q53GG5 RPS15-208ENST00000591804 711 ntTSL 5 BASIC11.94□□□□□ -0.5
PDLIM3Q53GG5 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC11.94□□□□□ -0.5
PDLIM3Q53GG5 BRI3BPP1-201ENST00000594224 787 ntBASIC11.94□□□□□ -0.5
PDLIM3Q53GG5 AC244669.2-201ENST00000612320 853 ntBASIC11.94□□□□□ -0.5
PDLIM3Q53GG5 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC11.94□□□□□ -0.5
PDLIM3Q53GG5 CHD1L-211ENST00000639534 1144 ntTSL 5 BASIC11.94□□□□□ -0.5
PDLIM3Q53GG5 DHRS4-AS1-204ENST00000555045 1848 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
PDLIM3Q53GG5 POLL-205ENST00000370169 2360 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
PDLIM3Q53GG5 RASGEF1C-202ENST00000393371 2395 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
PDLIM3Q53GG5 CENPP-203ENST00000375587 8766 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
PDLIM3Q53GG5 WDR5-201ENST00000358625 3151 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
PDLIM3Q53GG5 SNAP29-201ENST00000215730 4287 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
PDLIM3Q53GG5 LRRC20-201ENST00000355790 3414 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
PDLIM3Q53GG5 GPR68-203ENST00000531499 2859 ntAPPRIS P2 TSL 1 (best) BASIC11.94□□□□□ -0.5
PDLIM3Q53GG5 AAMP-202ENST00000420660 1761 ntTSL 2 BASIC11.94□□□□□ -0.5
PDLIM3Q53GG5 MAP4K2-201ENST00000294066 7178 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
PDLIM3Q53GG5 AC003102.2-201ENST00000589195 1469 ntBASIC11.94□□□□□ -0.5
PDLIM3Q53GG5 KCNN2-206ENST00000512097 3076 ntAPPRIS P2 TSL 5 BASIC11.94□□□□□ -0.5
PDLIM3Q53GG5 ST8SIA1-203ENST00000396037 9714 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
PDLIM3Q53GG5 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC11.94□□□□□ -0.5
PDLIM3Q53GG5 LRRC8A-203ENST00000372600 4355 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
PDLIM3Q53GG5 ZNF718-202ENST00000609714 2772 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
PDLIM3Q53GG5 SOGA1-201ENST00000237536 14371 ntAPPRIS ALT2 TSL 5 BASIC11.94□□□□□ -0.5
PDLIM3Q53GG5 KCNH6-202ENST00000456941 2928 ntTSL 5 BASIC11.93□□□□□ -0.5
PDLIM3Q53GG5 MYADM-203ENST00000391769 3186 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
PDLIM3Q53GG5 NMBR-201ENST00000258042 1354 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
PDLIM3Q53GG5 RPS6KA4-201ENST00000334205 3119 ntAPPRIS P3 TSL 1 (best) BASIC11.93□□□□□ -0.5
PDLIM3Q53GG5 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
PDLIM3Q53GG5 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
PDLIM3Q53GG5 STAG3L2-201ENST00000426587 2130 ntTSL 2 BASIC11.93□□□□□ -0.5
PDLIM3Q53GG5 ST3GAL5-203ENST00000393805 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC11.93□□□□□ -0.5
PDLIM3Q53GG5 ESPN-201ENST00000377828 3531 ntAPPRIS P2 TSL 1 (best) BASIC11.93□□□□□ -0.5
PDLIM3Q53GG5 NUTM2A-202ENST00000381707 3290 ntAPPRIS P2 TSL 1 (best) BASIC11.93□□□□□ -0.5
PDLIM3Q53GG5 NUTM2B-203ENST00000429828 3292 ntAPPRIS P2 TSL 5 BASIC11.93□□□□□ -0.5
PDLIM3Q53GG5 ZNF654-204ENST00000636215 6446 ntAPPRIS ALT2 TSL 5 BASIC11.93□□□□□ -0.5
PDLIM3Q53GG5 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC11.93□□□□□ -0.5
PDLIM3Q53GG5 AC006480.2-201ENST00000609770 1337 ntBASIC11.93□□□□□ -0.5
PDLIM3Q53GG5 SLC37A4-216ENST00000538950 2032 ntTSL 5 BASIC11.93□□□□□ -0.5
PDLIM3Q53GG5 TPO-205ENST00000382201 2956 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
PDLIM3Q53GG5 TYK2-210ENST00000529370 3176 ntTSL 2 BASIC11.93□□□□□ -0.5
PDLIM3Q53GG5 AC008125.1-201ENST00000548488 1538 ntTSL 5 BASIC11.93□□□□□ -0.5
PDLIM3Q53GG5 UEVLD-201ENST00000300038 995 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
PDLIM3Q53GG5 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC11.93□□□□□ -0.5
PDLIM3Q53GG5 NUDT1-203ENST00000356714 662 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
PDLIM3Q53GG5 MIR769-201ENST00000390225 118 ntBASIC11.93□□□□□ -0.5
PDLIM3Q53GG5 NUDT1-204ENST00000397046 712 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
PDLIM3Q53GG5 SOCS2P1-201ENST00000417727 557 ntBASIC11.93□□□□□ -0.5
PDLIM3Q53GG5 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC11.93□□□□□ -0.5
PDLIM3Q53GG5 AC093151.3-202ENST00000445073 709 ntTSL 3 BASIC11.93□□□□□ -0.5
PDLIM3Q53GG5 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC11.93□□□□□ -0.5
PDLIM3Q53GG5 PFN2-215ENST00000497148 743 ntTSL 4 BASIC11.93□□□□□ -0.5
PDLIM3Q53GG5 AC026434.2-201ENST00000506094 1078 ntBASIC11.93□□□□□ -0.5
PDLIM3Q53GG5 RPL8-205ENST00000527914 551 ntTSL 3 BASIC11.93□□□□□ -0.5
PDLIM3Q53GG5 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC11.93□□□□□ -0.5
PDLIM3Q53GG5 AC009486.1-201ENST00000569860 813 ntBASIC11.93□□□□□ -0.5
PDLIM3Q53GG5 AC104982.3-201ENST00000581995 514 ntBASIC11.93□□□□□ -0.5
PDLIM3Q53GG5 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC11.93□□□□□ -0.5
PDLIM3Q53GG5 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC11.93□□□□□ -0.5
PDLIM3Q53GG5 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC11.93□□□□□ -0.5
PDLIM3Q53GG5 NRXN1-210ENST00000406316 9375 ntAPPRIS P3 TSL 5 BASIC11.93□□□□□ -0.5
PDLIM3Q53GG5 FAM155B-201ENST00000252338 4013 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
PDLIM3Q53GG5 RCAN2-203ENST00000371374 3327 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
PDLIM3Q53GG5 CATSPER2P1-203ENST00000429276 1466 ntTSL 2 BASIC11.93□□□□□ -0.5
PDLIM3Q53GG5 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC11.93□□□□□ -0.5
PDLIM3Q53GG5 CYB5RL-201ENST00000287899 5777 ntTSL 3 BASIC11.93□□□□□ -0.5
PDLIM3Q53GG5 MFAP4-202ENST00000395592 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC11.93□□□□□ -0.5
PDLIM3Q53GG5 CICP8-201ENST00000455800 2813 ntBASIC11.93□□□□□ -0.5
Retrieved 100 of 98,524 protein–RNA pairs in 35.4 ms