Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 GOSR2-203ENST00000415811 2171 ntTSL 5 BASIC13.46□□□□□ -0.25
SOX3P41225 TMUB2-202ENST00000357984 1921 ntAPPRIS P3 TSL 1 (best) BASIC13.46□□□□□ -0.25
SOX3P41225 KRBA2-202ENST00000396267 2562 ntTSL 2 BASIC13.46□□□□□ -0.26
SOX3P41225 MSR1-201ENST00000262101 2132 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
SOX3P41225 ARMCX1-201ENST00000372829 2141 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
SOX3P41225 REM1-201ENST00000201979 1665 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
SOX3P41225 ANKMY1-206ENST00000401804 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.26
SOX3P41225 RBBP8NL-201ENST00000252998 2793 ntAPPRIS P1 TSL 2 BASIC13.46□□□□□ -0.26
SOX3P41225 HSPH1-202ENST00000380405 3480 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
SOX3P41225 CYP4F23P-201ENST00000593402 1579 ntBASIC13.45□□□□□ -0.26
SOX3P41225 ANK1-202ENST00000289734 8297 ntAPPRIS ALT2 TSL 1 (best) BASIC13.45□□□□□ -0.26
SOX3P41225 TMCC2-201ENST00000329800 2818 ntTSL 2 BASIC13.45□□□□□ -0.26
SOX3P41225 ABCG2-201ENST00000237612 4479 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
SOX3P41225 ZFYVE27-202ENST00000357540 2765 ntTSL 2 BASIC13.45□□□□□ -0.26
SOX3P41225 ZFYVE27-204ENST00000370610 2769 ntTSL 2 BASIC13.45□□□□□ -0.26
SOX3P41225 TUBBP5-203ENST00000508529 1334 ntBASIC13.45□□□□□ -0.26
SOX3P41225 SMPDL3B-201ENST00000373888 1548 ntAPPRIS ALT2 TSL 1 (best) BASIC13.45□□□□□ -0.26
SOX3P41225 KDM2B-202ENST00000377071 4595 ntAPPRIS P4 TSL 1 (best) BASIC13.45□□□□□ -0.26
SOX3P41225 SLC1A6-201ENST00000221742 1719 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
SOX3P41225 TSEN2-202ENST00000402228 2149 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
SOX3P41225 TATDN3-201ENST00000366973 2321 ntAPPRIS ALT1 TSL 1 (best) BASIC13.45□□□□□ -0.26
SOX3P41225 ATG9A-204ENST00000409422 2512 ntTSL 5 BASIC13.45□□□□□ -0.26
SOX3P41225 RMDN1-201ENST00000406452 3063 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
SOX3P41225 KRT74-203ENST00000549343 2858 ntTSL 5 BASIC13.45□□□□□ -0.26
SOX3P41225 AC111170.3-201ENST00000624282 2464 ntBASIC13.45□□□□□ -0.26
SOX3P41225 PAIP2-202ENST00000394795 2297 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
SOX3P41225 GK-204ENST00000378945 2063 ntAPPRIS P3 TSL 1 (best) BASIC13.45□□□□□ -0.26
SOX3P41225 ADAT1-201ENST00000307921 1869 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
SOX3P41225 PCDHB16-201ENST00000609684 5001 ntAPPRIS P1 BASIC13.45□□□□□ -0.26
SOX3P41225 ELOVL1-201ENST00000372458 1477 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
SOX3P41225 MRPS12-201ENST00000308018 1207 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
SOX3P41225 HIST1H2AD-201ENST00000341023 393 ntAPPRIS P1 BASIC13.45□□□□□ -0.26
SOX3P41225 CRYBA2-202ENST00000392096 708 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
SOX3P41225 SLC16A6P1-201ENST00000413214 1059 ntBASIC13.45□□□□□ -0.26
SOX3P41225 CYP46A4P-201ENST00000414953 267 ntBASIC13.45□□□□□ -0.26
SOX3P41225 AL354893.2-201ENST00000423075 529 ntTSL 5 BASIC13.45□□□□□ -0.26
SOX3P41225 SPTLC1P5-201ENST00000450718 252 ntBASIC13.45□□□□□ -0.26
SOX3P41225 AC125604.1-201ENST00000496255 707 ntBASIC13.45□□□□□ -0.26
SOX3P41225 PRSS30P-205ENST00000506153 699 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
SOX3P41225 IGHVIII-5-2-201ENST00000522505 261 ntBASIC13.45□□□□□ -0.26
SOX3P41225 FADS2-212ENST00000522639 360 ntTSL 5 BASIC13.45□□□□□ -0.26
SOX3P41225 AC015689.1-201ENST00000525365 462 ntTSL 2 BASIC13.45□□□□□ -0.26
SOX3P41225 AP002387.1-201ENST00000529369 680 ntTSL 2 BASIC13.45□□□□□ -0.26
SOX3P41225 SEC23A-204ENST00000548032 907 ntTSL 2 BASIC13.45□□□□□ -0.26
SOX3P41225 AC009779.1-201ENST00000551138 283 ntBASIC13.45□□□□□ -0.26
SOX3P41225 AL133523.1-201ENST00000554537 331 ntTSL 3 BASIC13.45□□□□□ -0.26
SOX3P41225 FADS2-215ENST00000574708 385 ntTSL 3 BASIC13.45□□□□□ -0.26
SOX3P41225 AC011447.3-201ENST00000590606 722 ntTSL 3 BASIC13.45□□□□□ -0.26
SOX3P41225 AL132994.2-201ENST00000603120 687 ntBASIC13.45□□□□□ -0.26
SOX3P41225 AC133540.1-201ENST00000620845 1019 ntBASIC13.45□□□□□ -0.26
SOX3P41225 AC079325.2-202ENST00000641031 462 ntAPPRIS ALT2 BASIC13.45□□□□□ -0.26
SOX3P41225 AL805961.1-203ENST00000641078 1258 ntBASIC13.45□□□□□ -0.26
SOX3P41225 GJB4-201ENST00000339480 2840 ntAPPRIS P1 TSL 2 BASIC13.45□□□□□ -0.26
SOX3P41225 PCDHA11-201ENST00000398640 6115 ntAPPRIS P3 TSL 1 (best) BASIC13.45□□□□□ -0.26
SOX3P41225 ABLIM2-213ENST00000514025 2974 ntTSL 2 BASIC13.45□□□□□ -0.26
SOX3P41225 SLCO6A1-207ENST00000513675 1611 ntTSL 2 BASIC13.45□□□□□ -0.26
SOX3P41225 MIR762HG-203ENST00000570025 1429 ntTSL 2 BASIC13.45□□□□□ -0.26
SOX3P41225 FGFRL1-201ENST00000264748 3100 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
SOX3P41225 SMOC2-202ENST00000356284 3117 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
SOX3P41225 CSTB-201ENST00000291568 2164 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
SOX3P41225 MGLL-201ENST00000265052 4642 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
SOX3P41225 ABCC6P1-201ENST00000546162 2943 ntTSL 2 BASIC13.45□□□□□ -0.26
SOX3P41225 AL024498.2-201ENST00000480294 1589 ntAPPRIS P1 TSL 2 BASIC13.45□□□□□ -0.26
SOX3P41225 CBX3-201ENST00000337620 2128 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
SOX3P41225 MPP2-214ENST00000523501 2121 ntAPPRIS P1 TSL 2 BASIC13.45□□□□□ -0.26
SOX3P41225 GABRB3-219ENST00000636466 4509 ntTSL 5 BASIC13.45□□□□□ -0.26
SOX3P41225 STX1B-201ENST00000215095 4697 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
SOX3P41225 REV1-202ENST00000393445 4686 ntAPPRIS ALT1 TSL 1 (best) BASIC13.45□□□□□ -0.26
SOX3P41225 AC090515.2-201ENST00000500929 1396 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
SOX3P41225 TCL1A-203ENST00000554012 1391 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
SOX3P41225 AC026992.2-202ENST00000565312 1934 ntTSL 5 BASIC13.45□□□□□ -0.26
SOX3P41225 CR382287.2-201ENST00000623370 1942 ntTSL 2 BASIC13.45□□□□□ -0.26
SOX3P41225 KLHL21-201ENST00000377658 4487 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
SOX3P41225 GRAMD4-202ENST00000406902 4484 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
SOX3P41225 SLIT1-201ENST00000266058 7925 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
SOX3P41225 AC068987.4-201ENST00000562343 2094 ntTSL 5 BASIC13.44□□□□□ -0.26
SOX3P41225 DDX31-204ENST00000372159 4577 ntAPPRIS P2 TSL 1 (best) BASIC13.44□□□□□ -0.26
SOX3P41225 BCKDHB-201ENST00000320393 3692 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
SOX3P41225 PBX3-201ENST00000342287 2755 ntAPPRIS ALT1 TSL 5 BASIC13.44□□□□□ -0.26
SOX3P41225 KLK3-216ENST00000617027 1341 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
SOX3P41225 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC13.44□□□□□ -0.26
SOX3P41225 SCARF1-201ENST00000263071 3443 ntAPPRIS P3 TSL 1 (best) BASIC13.44□□□□□ -0.26
SOX3P41225 SLC22A5-201ENST00000245407 3237 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
SOX3P41225 ILK-201ENST00000299421 1802 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
SOX3P41225 PDYN-AS1-201ENST00000446562 1802 ntTSL 2 BASIC13.44□□□□□ -0.26
SOX3P41225 ARHGEF10-207ENST00000520359 5472 ntAPPRIS ALT2 TSL 1 (best) BASIC13.44□□□□□ -0.26
SOX3P41225 CAND2-201ENST00000295989 4429 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
SOX3P41225 WDR83-201ENST00000418543 1457 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
SOX3P41225 ABCG8-201ENST00000272286 2665 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
SOX3P41225 SH3TC2-202ENST00000502274 2681 ntTSL 2 BASIC13.44□□□□□ -0.26
SOX3P41225 G3BP2-202ENST00000359707 4883 ntAPPRIS P4 TSL 1 (best) BASIC13.44□□□□□ -0.26
SOX3P41225 E2F7-201ENST00000322886 5740 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
SOX3P41225 FLI1-201ENST00000281428 4151 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
SOX3P41225 MAX-201ENST00000246163 897 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
SOX3P41225 VASH2-202ENST00000366964 2960 ntTSL 5 BASIC13.44□□□□□ -0.26
SOX3P41225 PRTFDC1-202ENST00000376376 741 ntTSL 2 BASIC13.44□□□□□ -0.26
SOX3P41225 NRM-202ENST00000376420 1228 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
SOX3P41225 MIR769-201ENST00000390225 118 ntBASIC13.44□□□□□ -0.26
SOX3P41225 AL139412.1-202ENST00000452465 675 ntTSL 3 BASIC13.44□□□□□ -0.26
SOX3P41225 IGHJ2P-201ENST00000454480 60 ntBASIC13.44□□□□□ -0.26
Retrieved 100 of 98,524 protein–RNA pairs in 34.7 ms