Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 Metazoa_SRP.152-201ENST00000614413 286 ntBASIC14.22□□□□□ -0.13
VCANP13611 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC14.22□□□□□ -0.13
VCANP13611 TLE3-203ENST00000451782 2356 ntAPPRIS ALT1 TSL 5 BASIC14.22□□□□□ -0.13
VCANP13611 ZNF497-201ENST00000311044 3468 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
VCANP13611 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC14.22□□□□□ -0.13
VCANP13611 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
VCANP13611 PDE7A-203ENST00000401827 3673 ntAPPRIS ALT1 TSL 1 (best) BASIC14.22□□□□□ -0.13
VCANP13611 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
VCANP13611 MCHR1-201ENST00000249016 2851 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
VCANP13611 AC023509.3-202ENST00000591834 1609 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
VCANP13611 CAV2-202ENST00000343213 776 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
VCANP13611 AL049792.1-201ENST00000424708 1262 ntBASIC14.22□□□□□ -0.13
VCANP13611 AC105424.1-201ENST00000514583 209 ntBASIC14.22□□□□□ -0.13
VCANP13611 AC022424.2-201ENST00000514848 454 ntTSL 2 BASIC14.22□□□□□ -0.13
VCANP13611 SPATA8-202ENST00000558553 406 ntAPPRIS ALT2 TSL 2 BASIC14.22□□□□□ -0.13
VCANP13611 MIR4726-201ENST00000615971 58 ntBASIC14.22□□□□□ -0.13
VCANP13611 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
VCANP13611 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC14.22□□□□□ -0.13
VCANP13611 LPAR5-201ENST00000329858 3171 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
VCANP13611 MIOS-201ENST00000340080 3453 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
VCANP13611 BCAR1-202ENST00000393420 2667 ntTSL 5 BASIC14.21□□□□□ -0.13
VCANP13611 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.13
VCANP13611 FECH-201ENST00000262093 3853 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
VCANP13611 NR1I2-207ENST00000640105 1305 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
VCANP13611 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC14.21□□□□□ -0.13
VCANP13611 PHKG1-201ENST00000297373 1431 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.13
VCANP13611 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
VCANP13611 ZCCHC7-201ENST00000322831 1219 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
VCANP13611 RPL13AP5-201ENST00000439189 612 ntBASIC14.21□□□□□ -0.13
VCANP13611 MRNIP-216ENST00000521333 410 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
VCANP13611 VAMP1-204ENST00000535180 747 ntTSL 3 BASIC14.21□□□□□ -0.13
VCANP13611 AC112702.1-201ENST00000623712 366 ntBASIC14.21□□□□□ -0.13
VCANP13611 CARS-216ENST00000639317 135 ntTSL 5 BASIC14.21□□□□□ -0.13
VCANP13611 PTN-202ENST00000393083 1599 ntTSL 5 BASIC14.21□□□□□ -0.13
VCANP13611 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
VCANP13611 BEAN1-201ENST00000299694 2160 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
VCANP13611 RBM14-201ENST00000310137 2828 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
VCANP13611 AC124319.4-201ENST00000622931 2161 ntBASIC14.21□□□□□ -0.13
VCANP13611 AC022007.1-201ENST00000383808 1897 ntTSL 2 BASIC14.21□□□□□ -0.13
VCANP13611 AC087481.3-201ENST00000602886 1894 ntBASIC14.21□□□□□ -0.13
VCANP13611 SALL4P6-201ENST00000429385 1691 ntBASIC14.21□□□□□ -0.13
VCANP13611 DMC1-207ENST00000616615 1595 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
VCANP13611 SLC35A2-203ENST00000376515 1044 ntTSL 3 BASIC14.21□□□□□ -0.13
VCANP13611 AC017081.1-201ENST00000420063 823 ntBASIC14.21□□□□□ -0.13
VCANP13611 AC093495.1-201ENST00000420253 1067 ntTSL 4 BASIC14.21□□□□□ -0.13
VCANP13611 DHRSX-IT1-201ENST00000437244 651 ntTSL 5 BASIC14.21□□□□□ -0.13
VCANP13611 AC008808.2-201ENST00000510349 569 ntTSL 3 BASIC14.21□□□□□ -0.13
VCANP13611 AC011389.2-201ENST00000514811 365 ntTSL 2 BASIC14.21□□□□□ -0.13
VCANP13611 C8orf37-AS1-203ENST00000521905 617 ntTSL 5 BASIC14.21□□□□□ -0.13
VCANP13611 MIR22HG-206ENST00000573127 899 ntTSL 3 BASIC14.21□□□□□ -0.13
VCANP13611 AP005203.1-202ENST00000584204 561 ntTSL 4 BASIC14.21□□□□□ -0.13
VCANP13611 ZNF223-202ENST00000585552 541 ntTSL 4 BASIC14.21□□□□□ -0.13
VCANP13611 AC136475.9-201ENST00000605240 497 ntBASIC14.21□□□□□ -0.13
VCANP13611 FURIN-208ENST00000640725 224 ntTSL 5 BASIC14.21□□□□□ -0.13
VCANP13611 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC14.21□□□□□ -0.14
VCANP13611 ZNF460-202ENST00000537645 2037 ntTSL 2 BASIC14.21□□□□□ -0.14
VCANP13611 DDX49-214ENST00000629999 1912 ntTSL 5 BASIC14.21□□□□□ -0.14
VCANP13611 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.14
VCANP13611 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC14.21□□□□□ -0.14
VCANP13611 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
VCANP13611 SEC61B-201ENST00000223641 545 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
VCANP13611 HMGN1P4-201ENST00000419500 290 ntBASIC14.2□□□□□ -0.14
VCANP13611 AC131097.4-201ENST00000442867 571 ntTSL 4 BASIC14.2□□□□□ -0.14
VCANP13611 SEC61B-203ENST00000498603 587 ntTSL 3 BASIC14.2□□□□□ -0.14
VCANP13611 SEMA6A-AS1-206ENST00000514214 782 ntTSL 3 BASIC14.2□□□□□ -0.14
VCANP13611 HNRNPA1P69-201ENST00000552536 933 ntBASIC14.2□□□□□ -0.14
VCANP13611 AC006273.1-201ENST00000606966 861 ntBASIC14.2□□□□□ -0.14
VCANP13611 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
VCANP13611 SLC26A5-201ENST00000306312 2689 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
VCANP13611 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
VCANP13611 SEPT9-208ENST00000541152 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
VCANP13611 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC14.2□□□□□ -0.14
VCANP13611 RADIL-201ENST00000399583 3689 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
VCANP13611 HEATR3-201ENST00000299192 3560 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
VCANP13611 PODN-201ENST00000312553 3010 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
VCANP13611 MAP3K11-208ENST00000530153 2830 ntTSL 2 BASIC14.2□□□□□ -0.14
VCANP13611 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
VCANP13611 OR8B8-201ENST00000328064 1033 ntAPPRIS P1 BASIC14.2□□□□□ -0.14
VCANP13611 CHEK2-203ENST00000382565 696 ntTSL 5 BASIC14.2□□□□□ -0.14
VCANP13611 AIMP2-203ENST00000400479 1107 ntTSL 5 BASIC14.2□□□□□ -0.14
VCANP13611 AC106017.1-201ENST00000428348 440 ntTSL 2 BASIC14.2□□□□□ -0.14
VCANP13611 AC007952.3-201ENST00000442355 440 ntTSL 2 BASIC14.2□□□□□ -0.14
VCANP13611 AC007952.8-202ENST00000495691 440 ntTSL 2 BASIC14.2□□□□□ -0.14
VCANP13611 AC090825.2-201ENST00000557959 739 ntBASIC14.2□□□□□ -0.14
VCANP13611 AC136698.1-201ENST00000558110 546 ntTSL 4 BASIC14.2□□□□□ -0.14
VCANP13611 AC048382.4-201ENST00000559065 546 ntTSL 4 BASIC14.2□□□□□ -0.14
VCANP13611 NSRP1-213ENST00000584423 482 ntTSL 2 BASIC14.2□□□□□ -0.14
VCANP13611 AL357137.1-201ENST00000604645 203 ntBASIC14.2□□□□□ -0.14
VCANP13611 ANKRD13B-201ENST00000394859 3214 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
VCANP13611 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
VCANP13611 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
VCANP13611 TRMT11-201ENST00000334379 1565 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
VCANP13611 GPRC5C-202ENST00000392627 2988 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
VCANP13611 CCDC32-201ENST00000358005 1704 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
VCANP13611 SCAMP5-202ENST00000425597 3411 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
VCANP13611 SAFB-202ENST00000454510 2650 ntAPPRIS ALT2 TSL 2 BASIC14.2□□□□□ -0.14
VCANP13611 SFXN4-201ENST00000355697 1363 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
VCANP13611 DDX31-202ENST00000372153 3285 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
VCANP13611 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
VCANP13611 KIR2DL1-201ENST00000291633 1203 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 75.2 ms