Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 ZNF124-204ENST00000491356 956 ntTSL 2 BASIC13.24□□□□□ -0.29
RNF4P78317 GUSBP1-202ENST00000508260 1012 ntTSL 2 BASIC13.24□□□□□ -0.29
RNF4P78317 WDYHV1-206ENST00000523356 869 ntTSL 3 BASIC13.24□□□□□ -0.29
RNF4P78317 TMEM223-202ENST00000525631 736 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
RNF4P78317 MAX-218ENST00000557746 571 ntTSL 4 BASIC13.24□□□□□ -0.29
RNF4P78317 AC025259.3-202ENST00000564363 687 ntTSL 2 BASIC13.24□□□□□ -0.29
RNF4P78317 PHBP15-201ENST00000574228 665 ntBASIC13.24□□□□□ -0.29
RNF4P78317 AC012044.1-201ENST00000603431 297 ntBASIC13.24□□□□□ -0.29
RNF4P78317 TAC3-211ENST00000615887 1120 ntAPPRIS P1 TSL 2 BASIC13.24□□□□□ -0.29
RNF4P78317 ROPN1-211ENST00000620893 1006 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
RNF4P78317 PLAG1-203ENST00000429357 1899 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
RNF4P78317 C16orf45-202ENST00000452191 1865 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
RNF4P78317 COL4A3-202ENST00000396578 8097 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
RNF4P78317 SLC7A8-212ENST00000529705 1819 ntTSL 2 BASIC13.24□□□□□ -0.29
RNF4P78317 LRP10-203ENST00000546834 1780 ntAPPRIS ALT2 TSL 5 BASIC13.24□□□□□ -0.29
RNF4P78317 PLCXD2-204ENST00000477665 1721 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
RNF4P78317 TMEM200A-204ENST00000617887 2899 ntAPPRIS P1 TSL 2 BASIC13.24□□□□□ -0.29
RNF4P78317 CLEC12A-AS1-201ENST00000420905 3956 ntTSL 2 BASIC13.24□□□□□ -0.29
RNF4P78317 PNPLA3-201ENST00000216180 2805 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
RNF4P78317 BCAR1-204ENST00000418647 3387 ntAPPRIS ALT2 TSL 2 BASIC13.24□□□□□ -0.29
RNF4P78317 C2-205ENST00000418949 1658 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
RNF4P78317 ADAM23-202ENST00000374415 2714 ntAPPRIS ALT1 TSL 5 BASIC13.24□□□□□ -0.29
RNF4P78317 MPP2-214ENST00000523501 2121 ntAPPRIS P1 TSL 2 BASIC13.24□□□□□ -0.29
RNF4P78317 CYP1A1-207ENST00000567032 2107 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
RNF4P78317 GJB1-203ENST00000374029 1587 ntAPPRIS P1 TSL 5 BASIC13.24□□□□□ -0.29
RNF4P78317 PRC1-204ENST00000442656 2060 ntTSL 2 BASIC13.24□□□□□ -0.29
RNF4P78317 SHC1-204ENST00000368450 3059 ntAPPRIS ALT1 TSL 1 (best) BASIC13.24□□□□□ -0.29
RNF4P78317 SHC1-205ENST00000368453 3062 ntAPPRIS P3 TSL 1 (best) BASIC13.24□□□□□ -0.29
RNF4P78317 AC027601.5-201ENST00000624065 2482 ntBASIC13.23□□□□□ -0.29
RNF4P78317 UBL4B-201ENST00000334179 1478 ntAPPRIS P1 BASIC13.23□□□□□ -0.29
RNF4P78317 ADAM15-209ENST00000449910 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
RNF4P78317 TCOF1-201ENST00000323668 4832 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
RNF4P78317 PHAX-201ENST00000297540 4288 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
RNF4P78317 JARID2-202ENST00000397311 5595 ntAPPRIS ALT2 TSL 2 BASIC13.23□□□□□ -0.29
RNF4P78317 FAM90A2P-201ENST00000511144 1395 ntBASIC13.23□□□□□ -0.29
RNF4P78317 FAM90A25P-201ENST00000528404 1395 ntBASIC13.23□□□□□ -0.29
RNF4P78317 SUSD5-201ENST00000309558 5008 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
RNF4P78317 RARS2-201ENST00000369536 1818 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
RNF4P78317 ZNF362-205ENST00000539719 3106 ntAPPRIS P1 TSL 5 BASIC13.23□□□□□ -0.29
RNF4P78317 AC005089.1-201ENST00000619486 2241 ntBASIC13.23□□□□□ -0.29
RNF4P78317 MAGEA4-202ENST00000360243 1773 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
RNF4P78317 MAGEA4-203ENST00000370335 1773 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
RNF4P78317 MAGEA4-204ENST00000370340 1773 ntAPPRIS P1 TSL 5 BASIC13.23□□□□□ -0.29
RNF4P78317 LINC00115-201ENST00000473798 1317 ntBASIC13.23□□□□□ -0.29
RNF4P78317 KRT18P9-201ENST00000604826 1300 ntBASIC13.23□□□□□ -0.29
RNF4P78317 FAM98B-202ENST00000397609 4388 ntAPPRIS P2 TSL 5 BASIC13.23□□□□□ -0.29
RNF4P78317 FUK-202ENST00000378912 3925 ntTSL 2 BASIC13.23□□□□□ -0.29
RNF4P78317 SLC26A8-201ENST00000355574 3463 ntAPPRIS P1 TSL 2 BASIC13.23□□□□□ -0.29
RNF4P78317 MOV10L1-202ENST00000354853 1701 ntTSL 2 BASIC13.23□□□□□ -0.29
RNF4P78317 HLA-DPA1-242ENST00000419277 1704 ntAPPRIS P2 BASIC13.23□□□□□ -0.29
RNF4P78317 KIAA0319-203ENST00000535378 6896 ntAPPRIS ALT2 TSL 2 BASIC13.23□□□□□ -0.29
RNF4P78317 DKK4-201ENST00000220812 894 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
RNF4P78317 THOC6-201ENST00000253952 1246 ntTSL 2 BASIC13.23□□□□□ -0.29
RNF4P78317 KRT17P5-201ENST00000332088 839 ntBASIC13.23□□□□□ -0.29
RNF4P78317 RPS16-202ENST00000339471 643 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
RNF4P78317 GSTP1-201ENST00000398603 700 ntTSL 3 BASIC13.23□□□□□ -0.29
RNF4P78317 AL606491.1-201ENST00000412797 483 ntTSL 3 BASIC13.23□□□□□ -0.29
RNF4P78317 AC012360.1-201ENST00000433219 674 ntTSL 5 BASIC13.23□□□□□ -0.29
RNF4P78317 AL591684.1-201ENST00000434533 234 ntTSL 5 BASIC13.23□□□□□ -0.29
RNF4P78317 BANF1-202ENST00000445560 946 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
RNF4P78317 RPSAP15-201ENST00000448168 861 ntBASIC13.23□□□□□ -0.29
RNF4P78317 AL136982.2-201ENST00000451760 234 ntTSL 5 BASIC13.23□□□□□ -0.29
RNF4P78317 KRT18P15-201ENST00000458108 1291 ntBASIC13.23□□□□□ -0.29
RNF4P78317 ATP6V1G2-210ENST00000483251 662 ntTSL 3 BASIC13.23□□□□□ -0.29
RNF4P78317 GATD1-205ENST00000524550 995 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
RNF4P78317 NME1-NME2-203ENST00000555572 1193 ntAPPRIS ALT2 TSL 2 BASIC13.23□□□□□ -0.29
RNF4P78317 TMEM219-203ENST00000561899 1249 ntAPPRIS P1 TSL 2 BASIC13.23□□□□□ -0.29
RNF4P78317 TAF1C-216ENST00000566732 2972 ntAPPRIS ALT2 TSL 2 BASIC13.23□□□□□ -0.29
RNF4P78317 NAT9-220ENST00000582870 896 ntTSL 5 BASIC13.23□□□□□ -0.29
RNF4P78317 PIN1-207ENST00000588695 648 ntAPPRIS P1 TSL 2 BASIC13.23□□□□□ -0.29
RNF4P78317 FBXL12-212ENST00000592067 879 ntTSL 2 BASIC13.23□□□□□ -0.29
RNF4P78317 AC005779.2-201ENST00000593083 550 ntAPPRIS P1 TSL 4 BASIC13.23□□□□□ -0.29
RNF4P78317 NEAT1-203ENST00000601801 487 ntTSL 4 BASIC13.23□□□□□ -0.29
RNF4P78317 LINC00923-205ENST00000615399 932 ntTSL 5 BASIC13.23□□□□□ -0.29
RNF4P78317 AC079336.7-201ENST00000623428 1078 ntBASIC13.23□□□□□ -0.29
RNF4P78317 FAM86B1-203ENST00000448228 2096 ntAPPRIS P2 TSL 5 BASIC13.23□□□□□ -0.29
RNF4P78317 ROPN1B-202ENST00000504401 2050 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
RNF4P78317 FAM124B-201ENST00000243806 2030 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
RNF4P78317 GGACT-201ENST00000376250 2804 ntAPPRIS P1 TSL 3 BASIC13.23□□□□□ -0.29
RNF4P78317 CICP16-201ENST00000502609 2813 ntBASIC13.23□□□□□ -0.29
RNF4P78317 CASC2-202ENST00000426021 3232 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
RNF4P78317 SRRD-201ENST00000215917 4020 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
RNF4P78317 ZEB2-225ENST00000558170 4012 ntAPPRIS P2 TSL 1 (best) BASIC13.23□□□□□ -0.29
RNF4P78317 AC073869.1-201ENST00000415574 2762 ntBASIC13.23□□□□□ -0.29
RNF4P78317 BUB1B-PAK6-201ENST00000441369 2767 ntAPPRIS P1 TSL 2 BASIC13.23□□□□□ -0.29
RNF4P78317 SIAE-206ENST00000618733 1980 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
RNF4P78317 AC016397.2-201ENST00000624848 1985 ntBASIC13.23□□□□□ -0.29
RNF4P78317 CYB5D2-203ENST00000575251 1588 ntTSL 2 BASIC13.23□□□□□ -0.29
RNF4P78317 HSPA7-201ENST00000445535 1927 ntBASIC13.23□□□□□ -0.29
RNF4P78317 TCAM1P-207ENST00000485295 1537 ntBASIC13.23□□□□□ -0.29
RNF4P78317 AC138761.4-201ENST00000578881 1514 ntTSL 3 BASIC13.23□□□□□ -0.29
RNF4P78317 RGMA-203ENST00000542321 3038 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
RNF4P78317 INPP5E-201ENST00000371712 3394 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
RNF4P78317 AATBC-203ENST00000448247 1889 ntTSL 2 BASIC13.23□□□□□ -0.29
RNF4P78317 KIAA0513-207ENST00000567328 1873 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
RNF4P78317 IGDCC3-201ENST00000327987 4479 ntAPPRIS P2 TSL 1 (best) BASIC13.23□□□□□ -0.29
RNF4P78317 AL021395.1-201ENST00000611791 2232 ntTSL 5 BASIC13.23□□□□□ -0.29
RNF4P78317 SAMD4A-213ENST00000631086 6677 ntTSL 5 BASIC13.23□□□□□ -0.29
RNF4P78317 SDCBP2-AS1-201ENST00000446423 1811 ntTSL 2 BASIC13.23□□□□□ -0.29
RNF4P78317 SEPT7-201ENST00000350320 4350 ntAPPRIS P5 TSL 5 BASIC13.23□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 73.7 ms