Protein–RNA interactions for Protein: P28702

RXRB, Retinoic acid receptor RXR-beta, humanhuman

Predictions only

Length 533 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RXRBP28702 AL589666.1-201ENST00000503906 835 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
RXRBP28702 AC138035.2-201ENST00000509192 727 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
RXRBP28702 AC009238.3-201ENST00000512705 217 ntBASIC18.13■□□□□ 0.49
RXRBP28702 PTS-204ENST00000525803 625 ntTSL 3 BASIC18.13■□□□□ 0.49
RXRBP28702 AP001102.1-201ENST00000528959 409 ntBASIC18.13■□□□□ 0.49
RXRBP28702 ANAPC15-209ENST00000538919 849 ntAPPRIS P3 TSL 3 BASIC18.13■□□□□ 0.49
RXRBP28702 AC003965.2-201ENST00000577140 265 ntTSL 3 BASIC18.13■□□□□ 0.49
RXRBP28702 SMIM22-206ENST00000589327 629 ntAPPRIS P4 TSL 1 (best) BASIC18.13■□□□□ 0.49
RXRBP28702 Metazoa_SRP.152-201ENST00000614413 286 ntBASIC18.13■□□□□ 0.49
RXRBP28702 LINC02193-207ENST00000621799 723 ntTSL 5 BASIC18.13■□□□□ 0.49
RXRBP28702 AC069287.1-202ENST00000622626 723 ntTSL 5 BASIC18.13■□□□□ 0.49
RXRBP28702 GARS-210ENST00000627489 324 ntTSL 4 BASIC18.13■□□□□ 0.49
RXRBP28702 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
RXRBP28702 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
RXRBP28702 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC18.13■□□□□ 0.49
RXRBP28702 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
RXRBP28702 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC18.13■□□□□ 0.49
RXRBP28702 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
RXRBP28702 NMBR-201ENST00000258042 1354 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
RXRBP28702 DKFZP434H168-201ENST00000567381 1905 ntBASIC18.13■□□□□ 0.49
RXRBP28702 POLR2J2-203ENST00000476151 1598 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
RXRBP28702 TINF2-215ENST00000626689 1643 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
RXRBP28702 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
RXRBP28702 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
RXRBP28702 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC18.12■□□□□ 0.49
RXRBP28702 DZIP1-203ENST00000361396 7418 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
RXRBP28702 FXYD6-207ENST00000527717 1799 ntAPPRIS P2 TSL 2 BASIC18.12■□□□□ 0.49
RXRBP28702 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
RXRBP28702 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
RXRBP28702 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
RXRBP28702 EDEM2-202ENST00000374492 1919 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
RXRBP28702 TEAD3-202ENST00000402886 2729 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
RXRBP28702 CKAP2-202ENST00000378034 1972 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
RXRBP28702 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
RXRBP28702 INHBA-205ENST00000638023 2002 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
RXRBP28702 RBP1-201ENST00000232219 898 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
RXRBP28702 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
RXRBP28702 NPPA-202ENST00000376480 855 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
RXRBP28702 TXLNGY-202ENST00000407724 1000 ntTSL 3 BASIC18.12■□□□□ 0.49
RXRBP28702 MIR1249-201ENST00000408671 66 ntBASIC18.12■□□□□ 0.49
RXRBP28702 POU5F1-202ENST00000441888 1055 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
RXRBP28702 AL662797.1-201ENST00000442852 799 ntTSL 3 BASIC18.12■□□□□ 0.49
RXRBP28702 AC067942.2-201ENST00000506227 1268 ntBASIC18.12■□□□□ 0.49
RXRBP28702 AC109830.1-203ENST00000506638 467 ntTSL 2 BASIC18.12■□□□□ 0.49
RXRBP28702 IFI27L1-211ENST00000557066 580 ntTSL 3 BASIC18.12■□□□□ 0.49
RXRBP28702 AC090825.2-201ENST00000557959 739 ntBASIC18.12■□□□□ 0.49
RXRBP28702 AC090617.4-201ENST00000572404 422 ntTSL 3 BASIC18.12■□□□□ 0.49
RXRBP28702 NPPA-203ENST00000610706 849 ntAPPRIS ALT1 TSL 5 BASIC18.12■□□□□ 0.49
RXRBP28702 AC068134.4-201ENST00000613365 122 ntBASIC18.12■□□□□ 0.49
RXRBP28702 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
RXRBP28702 RBP1-206ENST00000617459 667 ntTSL 2 BASIC18.12■□□□□ 0.49
RXRBP28702 LINC01285-201ENST00000412422 2289 ntTSL 2 BASIC18.12■□□□□ 0.49
RXRBP28702 CRISP2-201ENST00000339139 1382 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
RXRBP28702 EFHB-202ENST00000344838 2389 ntAPPRIS ALT2 TSL 2 BASIC18.12■□□□□ 0.49
RXRBP28702 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
RXRBP28702 PAK1-201ENST00000278568 2543 ntTSL 2 BASIC18.12■□□□□ 0.49
RXRBP28702 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
RXRBP28702 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
RXRBP28702 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
RXRBP28702 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
RXRBP28702 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
RXRBP28702 COPS7A-201ENST00000229251 1721 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
RXRBP28702 ACVR1C-204ENST00000409680 1786 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
RXRBP28702 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
RXRBP28702 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
RXRBP28702 TARS2-203ENST00000369054 1998 ntTSL 2 BASIC18.11■□□□□ 0.49
RXRBP28702 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
RXRBP28702 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC18.11■□□□□ 0.49
RXRBP28702 REPS1-221ENST00000626459 3665 ntTSL 5 BASIC18.11■□□□□ 0.49
RXRBP28702 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC18.11■□□□□ 0.49
RXRBP28702 SLC29A3-201ENST00000373189 2257 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
RXRBP28702 AD000864.1-201ENST00000624076 2295 ntBASIC18.11■□□□□ 0.49
RXRBP28702 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC18.11■□□□□ 0.49
RXRBP28702 ANKMY1-210ENST00000406958 2396 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
RXRBP28702 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC18.11■□□□□ 0.49
RXRBP28702 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
RXRBP28702 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC18.11■□□□□ 0.49
RXRBP28702 MKRN2-201ENST00000170447 2848 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
RXRBP28702 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
RXRBP28702 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
RXRBP28702 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
RXRBP28702 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
RXRBP28702 ROPN1B-201ENST00000251776 1026 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
RXRBP28702 TIMM10-201ENST00000257245 680 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
RXRBP28702 ZCCHC7-201ENST00000322831 1219 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
RXRBP28702 NPPB-201ENST00000376468 694 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
RXRBP28702 LINC00685-201ENST00000391707 428 ntTSL 5 BASIC18.11■□□□□ 0.49
RXRBP28702 AC106017.1-201ENST00000428348 440 ntTSL 2 BASIC18.11■□□□□ 0.49
RXRBP28702 AC010163.1-201ENST00000434440 520 ntTSL 2 BASIC18.11■□□□□ 0.49
RXRBP28702 AC007952.3-201ENST00000442355 440 ntTSL 2 BASIC18.11■□□□□ 0.49
RXRBP28702 AC005011.1-201ENST00000455206 210 ntBASIC18.11■□□□□ 0.49
RXRBP28702 AC007952.8-202ENST00000495691 440 ntTSL 2 BASIC18.11■□□□□ 0.49
RXRBP28702 AC010395.2-201ENST00000509899 904 ntBASIC18.11■□□□□ 0.49
RXRBP28702 AC100797.1-201ENST00000520760 316 ntTSL 2 BASIC18.11■□□□□ 0.49
RXRBP28702 IL32-230ENST00000551122 733 ntAPPRIS ALT2 TSL 3 BASIC18.11■□□□□ 0.49
RXRBP28702 AC092535.4-201ENST00000609548 397 ntBASIC18.11■□□□□ 0.49
RXRBP28702 AC244097.1-201ENST00000621631 1216 ntBASIC18.11■□□□□ 0.49
RXRBP28702 DACT3-AS1-201ENST00000500689 1304 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
RXRBP28702 TUBB8-207ENST00000568866 1367 ntTSL 5 BASIC18.11■□□□□ 0.49
RXRBP28702 TMUB2-205ENST00000587172 1598 ntTSL 2 BASIC18.11■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 62.3 ms