Protein–RNA interactions for Protein: Q9P1Y6

PHRF1, PHD and RING finger domain-containing protein 1, humanhuman

Known RBP Predictions only

Length 1,649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1Q9P1Y6 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC30.7■■■□□ 2.51
PHRF1Q9P1Y6 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC30.7■■■□□ 2.51
PHRF1Q9P1Y6 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC30.7■■■□□ 2.5
PHRF1Q9P1Y6 NME4-202ENST00000382940 766 ntTSL 3 BASIC30.69■■■□□ 2.5
PHRF1Q9P1Y6 MIR572-201ENST00000384983 95 ntBASIC30.69■■■□□ 2.5
PHRF1Q9P1Y6 AC004911.1-201ENST00000416316 871 ntBASIC30.69■■■□□ 2.5
PHRF1Q9P1Y6 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC30.69■■■□□ 2.5
PHRF1Q9P1Y6 KRT18P14-201ENST00000534205 1250 ntBASIC30.69■■■□□ 2.5
PHRF1Q9P1Y6 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC30.69■■■□□ 2.5
PHRF1Q9P1Y6 NME4-211ENST00000620944 1193 ntTSL 2 BASIC30.69■■■□□ 2.5
PHRF1Q9P1Y6 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
PHRF1Q9P1Y6 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
PHRF1Q9P1Y6 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
PHRF1Q9P1Y6 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC30.69■■■□□ 2.5
PHRF1Q9P1Y6 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC30.69■■■□□ 2.5
PHRF1Q9P1Y6 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC30.69■■■□□ 2.5
PHRF1Q9P1Y6 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC30.68■■■□□ 2.5
PHRF1Q9P1Y6 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC30.68■■■□□ 2.5
PHRF1Q9P1Y6 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC30.68■■■□□ 2.5
PHRF1Q9P1Y6 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC30.68■■■□□ 2.5
PHRF1Q9P1Y6 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
PHRF1Q9P1Y6 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC30.68■■■□□ 2.5
PHRF1Q9P1Y6 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
PHRF1Q9P1Y6 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
PHRF1Q9P1Y6 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC30.68■■■□□ 2.5
PHRF1Q9P1Y6 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC30.68■■■□□ 2.5
PHRF1Q9P1Y6 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC30.68■■■□□ 2.5
PHRF1Q9P1Y6 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC30.68■■■□□ 2.5
PHRF1Q9P1Y6 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC30.67■■■□□ 2.5
PHRF1Q9P1Y6 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC30.67■■■□□ 2.5
PHRF1Q9P1Y6 ID1-201ENST00000376105 1233 ntBASIC30.67■■■□□ 2.5
PHRF1Q9P1Y6 VPS53-216ENST00000574029 585 ntTSL 4 BASIC30.67■■■□□ 2.5
PHRF1Q9P1Y6 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC30.67■■■□□ 2.5
PHRF1Q9P1Y6 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC30.67■■■□□ 2.5
PHRF1Q9P1Y6 AL161729.1-201ENST00000604104 1402 ntBASIC30.66■■■□□ 2.5
PHRF1Q9P1Y6 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC30.66■■■□□ 2.5
PHRF1Q9P1Y6 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC30.66■■■□□ 2.5
PHRF1Q9P1Y6 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC30.66■■■□□ 2.5
PHRF1Q9P1Y6 TERF1P2-201ENST00000583350 1212 ntBASIC30.66■■■□□ 2.5
PHRF1Q9P1Y6 AL354811.1-201ENST00000610286 706 ntBASIC30.66■■■□□ 2.5
PHRF1Q9P1Y6 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC30.66■■■□□ 2.5
PHRF1Q9P1Y6 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC30.66■■■□□ 2.5
PHRF1Q9P1Y6 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC30.66■■■□□ 2.5
PHRF1Q9P1Y6 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC30.66■■■□□ 2.5
PHRF1Q9P1Y6 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC30.65■■■□□ 2.5
PHRF1Q9P1Y6 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC30.65■■■□□ 2.5
PHRF1Q9P1Y6 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC30.65■■■□□ 2.5
PHRF1Q9P1Y6 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC30.65■■■□□ 2.5
PHRF1Q9P1Y6 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC30.65■■■□□ 2.5
PHRF1Q9P1Y6 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC30.65■■■□□ 2.5
PHRF1Q9P1Y6 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC30.65■■■□□ 2.5
PHRF1Q9P1Y6 AC145676.1-201ENST00000514988 2004 ntBASIC30.65■■■□□ 2.5
PHRF1Q9P1Y6 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC30.64■■■□□ 2.5
PHRF1Q9P1Y6 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC30.64■■■□□ 2.5
PHRF1Q9P1Y6 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
PHRF1Q9P1Y6 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC30.64■■■□□ 2.5
PHRF1Q9P1Y6 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC30.64■■■□□ 2.5
PHRF1Q9P1Y6 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC30.64■■■□□ 2.5
PHRF1Q9P1Y6 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC30.64■■■□□ 2.5
PHRF1Q9P1Y6 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC30.64■■■□□ 2.5
PHRF1Q9P1Y6 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
PHRF1Q9P1Y6 AC091060.1-201ENST00000623524 1766 ntBASIC30.64■■■□□ 2.5
PHRF1Q9P1Y6 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC30.63■■■□□ 2.49
PHRF1Q9P1Y6 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC30.63■■■□□ 2.49
PHRF1Q9P1Y6 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC30.63■■■□□ 2.49
PHRF1Q9P1Y6 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC30.63■■■□□ 2.49
PHRF1Q9P1Y6 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC30.63■■■□□ 2.49
PHRF1Q9P1Y6 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC30.62■■■□□ 2.49
PHRF1Q9P1Y6 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC30.62■■■□□ 2.49
PHRF1Q9P1Y6 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC30.62■■■□□ 2.49
PHRF1Q9P1Y6 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC30.62■■■□□ 2.49
PHRF1Q9P1Y6 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC30.62■■■□□ 2.49
PHRF1Q9P1Y6 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC30.62■■■□□ 2.49
PHRF1Q9P1Y6 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC30.62■■■□□ 2.49
PHRF1Q9P1Y6 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC30.62■■■□□ 2.49
PHRF1Q9P1Y6 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC30.62■■■□□ 2.49
PHRF1Q9P1Y6 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC30.62■■■□□ 2.49
PHRF1Q9P1Y6 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC30.62■■■□□ 2.49
PHRF1Q9P1Y6 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC30.62■■■□□ 2.49
PHRF1Q9P1Y6 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC30.62■■■□□ 2.49
PHRF1Q9P1Y6 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC30.61■■■□□ 2.49
PHRF1Q9P1Y6 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC30.61■■■□□ 2.49
PHRF1Q9P1Y6 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC30.61■■■□□ 2.49
PHRF1Q9P1Y6 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC30.61■■■□□ 2.49
PHRF1Q9P1Y6 AC010525.1-201ENST00000585559 441 ntBASIC30.61■■■□□ 2.49
PHRF1Q9P1Y6 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC30.61■■■□□ 2.49
PHRF1Q9P1Y6 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC30.6■■■□□ 2.49
PHRF1Q9P1Y6 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC30.6■■■□□ 2.49
PHRF1Q9P1Y6 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC30.6■■■□□ 2.49
PHRF1Q9P1Y6 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC30.6■■■□□ 2.49
PHRF1Q9P1Y6 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC30.6■■■□□ 2.49
PHRF1Q9P1Y6 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC30.6■■■□□ 2.49
PHRF1Q9P1Y6 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC30.6■■■□□ 2.49
PHRF1Q9P1Y6 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC30.59■■■□□ 2.49
PHRF1Q9P1Y6 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC30.59■■■□□ 2.49
PHRF1Q9P1Y6 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC30.59■■■□□ 2.49
PHRF1Q9P1Y6 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
PHRF1Q9P1Y6 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC30.59■■■□□ 2.49
PHRF1Q9P1Y6 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC30.59■■■□□ 2.49
PHRF1Q9P1Y6 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC30.58■■■□□ 2.49
Retrieved 100 of 98,524 protein–RNA pairs in 14.7 ms