Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC29.75■■■□□ 2.35
SHANK3Q9BYB0 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC29.75■■■□□ 2.35
SHANK3Q9BYB0 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC29.75■■■□□ 2.35
SHANK3Q9BYB0 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC29.74■■■□□ 2.35
SHANK3Q9BYB0 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC29.74■■■□□ 2.35
SHANK3Q9BYB0 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC29.74■■■□□ 2.35
SHANK3Q9BYB0 AL137784.2-201ENST00000607332 1000 ntBASIC29.74■■■□□ 2.35
SHANK3Q9BYB0 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC29.74■■■□□ 2.35
SHANK3Q9BYB0 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC29.74■■■□□ 2.35
SHANK3Q9BYB0 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC29.74■■■□□ 2.35
SHANK3Q9BYB0 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC29.73■■■□□ 2.35
SHANK3Q9BYB0 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC29.73■■■□□ 2.35
SHANK3Q9BYB0 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC29.73■■■□□ 2.35
SHANK3Q9BYB0 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC29.73■■■□□ 2.35
SHANK3Q9BYB0 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC29.73■■■□□ 2.35
SHANK3Q9BYB0 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC29.73■■■□□ 2.35
SHANK3Q9BYB0 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC29.73■■■□□ 2.35
SHANK3Q9BYB0 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC29.73■■■□□ 2.35
SHANK3Q9BYB0 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC29.73■■■□□ 2.35
SHANK3Q9BYB0 AC010525.1-201ENST00000585559 441 ntBASIC29.73■■■□□ 2.35
SHANK3Q9BYB0 MIR6084-201ENST00000622012 110 ntBASIC29.73■■■□□ 2.35
SHANK3Q9BYB0 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC29.73■■■□□ 2.35
SHANK3Q9BYB0 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC29.72■■■□□ 2.35
SHANK3Q9BYB0 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC29.72■■■□□ 2.35
SHANK3Q9BYB0 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC29.72■■■□□ 2.35
SHANK3Q9BYB0 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC29.72■■■□□ 2.35
SHANK3Q9BYB0 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC29.72■■■□□ 2.35
SHANK3Q9BYB0 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC29.72■■■□□ 2.35
SHANK3Q9BYB0 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC29.71■■■□□ 2.35
SHANK3Q9BYB0 MIR572-201ENST00000384983 95 ntBASIC29.71■■■□□ 2.35
SHANK3Q9BYB0 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC29.71■■■□□ 2.35
SHANK3Q9BYB0 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC29.71■■■□□ 2.35
SHANK3Q9BYB0 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC29.71■■■□□ 2.35
SHANK3Q9BYB0 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC29.71■■■□□ 2.35
SHANK3Q9BYB0 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC29.71■■■□□ 2.35
SHANK3Q9BYB0 CCDC92B-201ENST00000575506 885 ntBASIC29.71■■■□□ 2.35
SHANK3Q9BYB0 AL358852.1-201ENST00000623174 1268 ntBASIC29.71■■■□□ 2.35
SHANK3Q9BYB0 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC29.71■■■□□ 2.35
SHANK3Q9BYB0 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC29.7■■■□□ 2.35
SHANK3Q9BYB0 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC29.7■■■□□ 2.35
SHANK3Q9BYB0 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC29.7■■■□□ 2.35
SHANK3Q9BYB0 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC29.7■■■□□ 2.35
SHANK3Q9BYB0 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC29.7■■■□□ 2.34
SHANK3Q9BYB0 AC123595.1-201ENST00000440769 1046 ntBASIC29.7■■■□□ 2.34
SHANK3Q9BYB0 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC29.7■■■□□ 2.34
SHANK3Q9BYB0 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC29.7■■■□□ 2.34
SHANK3Q9BYB0 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC29.7■■■□□ 2.34
SHANK3Q9BYB0 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC29.69■■■□□ 2.34
SHANK3Q9BYB0 KRT18P14-201ENST00000534205 1250 ntBASIC29.69■■■□□ 2.34
SHANK3Q9BYB0 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC29.69■■■□□ 2.34
SHANK3Q9BYB0 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC29.69■■■□□ 2.34
SHANK3Q9BYB0 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC29.69■■■□□ 2.34
SHANK3Q9BYB0 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC29.69■■■□□ 2.34
SHANK3Q9BYB0 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC29.69■■■□□ 2.34
SHANK3Q9BYB0 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC29.69■■■□□ 2.34
SHANK3Q9BYB0 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC29.68■■■□□ 2.34
SHANK3Q9BYB0 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC29.68■■■□□ 2.34
SHANK3Q9BYB0 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC29.68■■■□□ 2.34
SHANK3Q9BYB0 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC29.68■■■□□ 2.34
SHANK3Q9BYB0 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC29.68■■■□□ 2.34
SHANK3Q9BYB0 AL161729.1-201ENST00000604104 1402 ntBASIC29.68■■■□□ 2.34
SHANK3Q9BYB0 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC29.68■■■□□ 2.34
SHANK3Q9BYB0 HLA-L-211ENST00000482052 1765 ntBASIC29.68■■■□□ 2.34
SHANK3Q9BYB0 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC29.68■■■□□ 2.34
SHANK3Q9BYB0 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC29.68■■■□□ 2.34
SHANK3Q9BYB0 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC29.68■■■□□ 2.34
SHANK3Q9BYB0 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC29.67■■■□□ 2.34
SHANK3Q9BYB0 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC29.67■■■□□ 2.34
SHANK3Q9BYB0 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC29.67■■■□□ 2.34
SHANK3Q9BYB0 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC29.67■■■□□ 2.34
SHANK3Q9BYB0 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC29.67■■■□□ 2.34
SHANK3Q9BYB0 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC29.67■■■□□ 2.34
SHANK3Q9BYB0 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC29.67■■■□□ 2.34
SHANK3Q9BYB0 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC29.67■■■□□ 2.34
SHANK3Q9BYB0 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC29.67■■■□□ 2.34
SHANK3Q9BYB0 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC29.66■■■□□ 2.34
SHANK3Q9BYB0 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC29.66■■■□□ 2.34
SHANK3Q9BYB0 ALDH1A3-203ENST00000557963 1670 ntBASIC29.66■■■□□ 2.34
SHANK3Q9BYB0 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC29.66■■■□□ 2.34
SHANK3Q9BYB0 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC29.66■■■□□ 2.34
SHANK3Q9BYB0 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC29.65■■■□□ 2.34
SHANK3Q9BYB0 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC29.65■■■□□ 2.34
SHANK3Q9BYB0 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC29.65■■■□□ 2.34
SHANK3Q9BYB0 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC29.65■■■□□ 2.34
SHANK3Q9BYB0 TERF1P2-201ENST00000583350 1212 ntBASIC29.65■■■□□ 2.34
SHANK3Q9BYB0 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC29.65■■■□□ 2.34
SHANK3Q9BYB0 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC29.65■■■□□ 2.34
SHANK3Q9BYB0 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC29.65■■■□□ 2.34
SHANK3Q9BYB0 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC29.65■■■□□ 2.34
SHANK3Q9BYB0 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC29.65■■■□□ 2.34
SHANK3Q9BYB0 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC29.65■■■□□ 2.34
SHANK3Q9BYB0 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC29.65■■■□□ 2.34
SHANK3Q9BYB0 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC29.65■■■□□ 2.34
SHANK3Q9BYB0 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC29.65■■■□□ 2.34
SHANK3Q9BYB0 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC29.64■■■□□ 2.34
SHANK3Q9BYB0 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC29.64■■■□□ 2.34
SHANK3Q9BYB0 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC29.64■■■□□ 2.34
SHANK3Q9BYB0 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC29.64■■■□□ 2.34
SHANK3Q9BYB0 KRT18P61-201ENST00000585825 1298 ntBASIC29.64■■■□□ 2.34
SHANK3Q9BYB0 AL354811.1-201ENST00000610286 706 ntBASIC29.64■■■□□ 2.34
Retrieved 100 of 98,524 protein–RNA pairs in 21.8 ms