Protein–RNA interactions for Protein: P35625

TIMP3, Metalloproteinase inhibitor 3, humanhuman

Predictions only

Length 211 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TIMP3P35625 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC20.04■□□□□ 0.8
TIMP3P35625 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
TIMP3P35625 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
TIMP3P35625 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC20.03■□□□□ 0.8
TIMP3P35625 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
TIMP3P35625 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
TIMP3P35625 AC008764.7-201ENST00000593779 1081 ntBASIC20.03■□□□□ 0.8
TIMP3P35625 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
TIMP3P35625 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
TIMP3P35625 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC20.03■□□□□ 0.8
TIMP3P35625 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC20.03■□□□□ 0.8
TIMP3P35625 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
TIMP3P35625 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC20.03■□□□□ 0.8
TIMP3P35625 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
TIMP3P35625 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
TIMP3P35625 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC20.02■□□□□ 0.8
TIMP3P35625 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
TIMP3P35625 BX842568.3-201ENST00000418104 571 ntBASIC20.02■□□□□ 0.8
TIMP3P35625 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
TIMP3P35625 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
TIMP3P35625 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC20.02■□□□□ 0.8
TIMP3P35625 AC233992.3-201ENST00000607491 485 ntBASIC20.02■□□□□ 0.8
TIMP3P35625 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
TIMP3P35625 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC20.02■□□□□ 0.8
TIMP3P35625 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
TIMP3P35625 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC20.02■□□□□ 0.8
TIMP3P35625 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
TIMP3P35625 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC20.01■□□□□ 0.79
TIMP3P35625 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
TIMP3P35625 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
TIMP3P35625 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
TIMP3P35625 AC099791.1-201ENST00000416440 715 ntBASIC20.01■□□□□ 0.79
TIMP3P35625 AC026271.2-201ENST00000428091 497 ntBASIC20.01■□□□□ 0.79
TIMP3P35625 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC20.01■□□□□ 0.79
TIMP3P35625 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC20.01■□□□□ 0.79
TIMP3P35625 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC20.01■□□□□ 0.79
TIMP3P35625 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC20.01■□□□□ 0.79
TIMP3P35625 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC20.01■□□□□ 0.79
TIMP3P35625 MPST-208ENST00000628507 698 ntTSL 5 BASIC20.01■□□□□ 0.79
TIMP3P35625 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
TIMP3P35625 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
TIMP3P35625 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC20■□□□□ 0.79
TIMP3P35625 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
TIMP3P35625 pRNA.6-201ENST00000610482 90 ntBASIC20■□□□□ 0.79
TIMP3P35625 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
TIMP3P35625 pRNA.5-201ENST00000612139 90 ntBASIC20■□□□□ 0.79
TIMP3P35625 pRNA.11-201ENST00000618423 90 ntBASIC20■□□□□ 0.79
TIMP3P35625 pRNA.13-201ENST00000619112 90 ntBASIC20■□□□□ 0.79
TIMP3P35625 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
TIMP3P35625 GTSE1-AS1-202ENST00000623117 1518 ntBASIC20■□□□□ 0.79
TIMP3P35625 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
TIMP3P35625 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
TIMP3P35625 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
TIMP3P35625 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC19.99■□□□□ 0.79
TIMP3P35625 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC19.99■□□□□ 0.79
TIMP3P35625 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
TIMP3P35625 STOX2-205ENST00000513034 807 ntTSL 3 BASIC19.99■□□□□ 0.79
TIMP3P35625 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC19.99■□□□□ 0.79
TIMP3P35625 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
TIMP3P35625 AC138932.3-201ENST00000567634 1902 ntBASIC19.99■□□□□ 0.79
TIMP3P35625 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC19.99■□□□□ 0.79
TIMP3P35625 TMEM202-AS1-202ENST00000565181 2325 ntBASIC19.99■□□□□ 0.79
TIMP3P35625 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
TIMP3P35625 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
TIMP3P35625 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
TIMP3P35625 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC19.98■□□□□ 0.79
TIMP3P35625 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC19.98■□□□□ 0.79
TIMP3P35625 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC19.98■□□□□ 0.79
TIMP3P35625 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
TIMP3P35625 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC19.98■□□□□ 0.79
TIMP3P35625 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC19.98■□□□□ 0.79
TIMP3P35625 EED-207ENST00000528180 1745 ntTSL 5 BASIC19.98■□□□□ 0.79
TIMP3P35625 MED17-227ENST00000640521 2047 ntTSL 5 BASIC19.98■□□□□ 0.79
TIMP3P35625 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
TIMP3P35625 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
TIMP3P35625 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
TIMP3P35625 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
TIMP3P35625 SNX3-202ENST00000349379 890 ntTSL 2 BASIC19.97■□□□□ 0.79
TIMP3P35625 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC19.97■□□□□ 0.79
TIMP3P35625 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC19.97■□□□□ 0.79
TIMP3P35625 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
TIMP3P35625 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC19.97■□□□□ 0.79
TIMP3P35625 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
TIMP3P35625 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC19.96■□□□□ 0.79
TIMP3P35625 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC19.96■□□□□ 0.79
TIMP3P35625 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC19.96■□□□□ 0.79
TIMP3P35625 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
TIMP3P35625 IRS3P-201ENST00000223076 1006 ntBASIC19.96■□□□□ 0.79
TIMP3P35625 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC19.96■□□□□ 0.79
TIMP3P35625 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC19.96■□□□□ 0.79
TIMP3P35625 MIR5787-201ENST00000611784 55 ntBASIC19.96■□□□□ 0.79
TIMP3P35625 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC19.96■□□□□ 0.79
TIMP3P35625 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC19.96■□□□□ 0.79
TIMP3P35625 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
TIMP3P35625 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
TIMP3P35625 FP325331.1-202ENST00000623531 1380 ntBASIC19.95■□□□□ 0.79
TIMP3P35625 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC19.95■□□□□ 0.78
TIMP3P35625 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
TIMP3P35625 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC19.95■□□□□ 0.78
TIMP3P35625 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC19.95■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 21.6 ms