Protein–RNA interactions for Protein: A6NMK7

CPSF4L, Putative cleavage and polyadenylation specificity factor subunit 4-like protein, humanhuman

Known RBP Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4LA6NMK7 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
CPSF4LA6NMK7 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CPSF4LA6NMK7 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC20.79■□□□□ 0.92
CPSF4LA6NMK7 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC20.79■□□□□ 0.92
CPSF4LA6NMK7 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC20.79■□□□□ 0.92
CPSF4LA6NMK7 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CPSF4LA6NMK7 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CPSF4LA6NMK7 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CPSF4LA6NMK7 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC20.78■□□□□ 0.92
CPSF4LA6NMK7 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC20.78■□□□□ 0.92
CPSF4LA6NMK7 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CPSF4LA6NMK7 AL033527.3-201ENST00000566366 1196 ntBASIC20.78■□□□□ 0.92
CPSF4LA6NMK7 AC012354.3-201ENST00000623734 483 ntBASIC20.78■□□□□ 0.92
CPSF4LA6NMK7 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CPSF4LA6NMK7 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CPSF4LA6NMK7 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
CPSF4LA6NMK7 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CPSF4LA6NMK7 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
CPSF4LA6NMK7 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CPSF4LA6NMK7 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.92
CPSF4LA6NMK7 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CPSF4LA6NMK7 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC20.77■□□□□ 0.92
CPSF4LA6NMK7 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC20.77■□□□□ 0.92
CPSF4LA6NMK7 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC20.77■□□□□ 0.92
CPSF4LA6NMK7 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC20.77■□□□□ 0.92
CPSF4LA6NMK7 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC20.77■□□□□ 0.92
CPSF4LA6NMK7 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC20.77■□□□□ 0.92
CPSF4LA6NMK7 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC20.77■□□□□ 0.92
CPSF4LA6NMK7 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC20.77■□□□□ 0.91
CPSF4LA6NMK7 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
CPSF4LA6NMK7 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
CPSF4LA6NMK7 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CPSF4LA6NMK7 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC20.76■□□□□ 0.91
CPSF4LA6NMK7 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC20.76■□□□□ 0.91
CPSF4LA6NMK7 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
CPSF4LA6NMK7 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CPSF4LA6NMK7 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC20.76■□□□□ 0.91
CPSF4LA6NMK7 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CPSF4LA6NMK7 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CPSF4LA6NMK7 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CPSF4LA6NMK7 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CPSF4LA6NMK7 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC20.75■□□□□ 0.91
CPSF4LA6NMK7 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC20.75■□□□□ 0.91
CPSF4LA6NMK7 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC20.75■□□□□ 0.91
CPSF4LA6NMK7 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
CPSF4LA6NMK7 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC20.75■□□□□ 0.91
CPSF4LA6NMK7 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CPSF4LA6NMK7 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CPSF4LA6NMK7 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
CPSF4LA6NMK7 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CPSF4LA6NMK7 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CPSF4LA6NMK7 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CPSF4LA6NMK7 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
CPSF4LA6NMK7 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CPSF4LA6NMK7 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
CPSF4LA6NMK7 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CPSF4LA6NMK7 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC20.74■□□□□ 0.91
CPSF4LA6NMK7 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC20.74■□□□□ 0.91
CPSF4LA6NMK7 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
CPSF4LA6NMK7 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC20.74■□□□□ 0.91
CPSF4LA6NMK7 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CPSF4LA6NMK7 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC20.74■□□□□ 0.91
CPSF4LA6NMK7 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC20.74■□□□□ 0.91
CPSF4LA6NMK7 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC20.74■□□□□ 0.91
CPSF4LA6NMK7 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CPSF4LA6NMK7 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
CPSF4LA6NMK7 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CPSF4LA6NMK7 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CPSF4LA6NMK7 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CPSF4LA6NMK7 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CPSF4LA6NMK7 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CPSF4LA6NMK7 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC20.73■□□□□ 0.91
CPSF4LA6NMK7 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
CPSF4LA6NMK7 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
CPSF4LA6NMK7 C1orf229-201ENST00000623686 2258 ntBASIC20.73■□□□□ 0.91
CPSF4LA6NMK7 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC20.73■□□□□ 0.91
CPSF4LA6NMK7 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CPSF4LA6NMK7 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC20.73■□□□□ 0.91
CPSF4LA6NMK7 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC20.73■□□□□ 0.91
CPSF4LA6NMK7 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC20.73■□□□□ 0.91
CPSF4LA6NMK7 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CPSF4LA6NMK7 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
CPSF4LA6NMK7 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
CPSF4LA6NMK7 KRT8P33-201ENST00000508125 1423 ntBASIC20.72■□□□□ 0.91
CPSF4LA6NMK7 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC20.72■□□□□ 0.91
CPSF4LA6NMK7 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
CPSF4LA6NMK7 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC20.72■□□□□ 0.91
CPSF4LA6NMK7 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC20.72■□□□□ 0.91
CPSF4LA6NMK7 MIR4508-201ENST00000584178 70 ntBASIC20.72■□□□□ 0.91
CPSF4LA6NMK7 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC20.72■□□□□ 0.91
CPSF4LA6NMK7 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
CPSF4LA6NMK7 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
CPSF4LA6NMK7 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CPSF4LA6NMK7 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CPSF4LA6NMK7 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC20.71■□□□□ 0.91
CPSF4LA6NMK7 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
CPSF4LA6NMK7 AC233723.2-201ENST00000623798 2106 ntBASIC20.71■□□□□ 0.91
CPSF4LA6NMK7 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
CPSF4LA6NMK7 AC004448.1-201ENST00000458332 883 ntBASIC20.71■□□□□ 0.91
CPSF4LA6NMK7 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 15.2 ms