Protein–RNA interactions for Protein: A0A539

TCRBV7S3A2, T-cell receptor beta variable 4-2 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV7S3A2A0A539 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC23.05■■□□□ 1.28
TCRBV7S3A2A0A539 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
TCRBV7S3A2A0A539 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC23.05■■□□□ 1.28
TCRBV7S3A2A0A539 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC23.05■■□□□ 1.28
TCRBV7S3A2A0A539 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
TCRBV7S3A2A0A539 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
TCRBV7S3A2A0A539 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC23.04■■□□□ 1.28
TCRBV7S3A2A0A539 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC23.04■■□□□ 1.28
TCRBV7S3A2A0A539 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC23.04■■□□□ 1.28
TCRBV7S3A2A0A539 AC103834.1-201ENST00000520383 144 ntBASIC23.04■■□□□ 1.28
TCRBV7S3A2A0A539 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC23.04■■□□□ 1.28
TCRBV7S3A2A0A539 AL033527.3-201ENST00000566366 1196 ntBASIC23.04■■□□□ 1.28
TCRBV7S3A2A0A539 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
TCRBV7S3A2A0A539 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
TCRBV7S3A2A0A539 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC23.04■■□□□ 1.28
TCRBV7S3A2A0A539 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
TCRBV7S3A2A0A539 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC23.03■■□□□ 1.28
TCRBV7S3A2A0A539 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
TCRBV7S3A2A0A539 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC23.03■■□□□ 1.28
TCRBV7S3A2A0A539 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC23.03■■□□□ 1.28
TCRBV7S3A2A0A539 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC23.03■■□□□ 1.28
TCRBV7S3A2A0A539 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
TCRBV7S3A2A0A539 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC23.02■■□□□ 1.28
TCRBV7S3A2A0A539 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC23.02■■□□□ 1.28
TCRBV7S3A2A0A539 AL117328.2-201ENST00000624617 1940 ntBASIC23.02■■□□□ 1.28
TCRBV7S3A2A0A539 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC23.02■■□□□ 1.28
TCRBV7S3A2A0A539 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC23.02■■□□□ 1.28
TCRBV7S3A2A0A539 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC23.02■■□□□ 1.28
TCRBV7S3A2A0A539 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
TCRBV7S3A2A0A539 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
TCRBV7S3A2A0A539 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC23.02■■□□□ 1.28
TCRBV7S3A2A0A539 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC23.01■■□□□ 1.27
TCRBV7S3A2A0A539 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
TCRBV7S3A2A0A539 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
TCRBV7S3A2A0A539 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC23.01■■□□□ 1.27
TCRBV7S3A2A0A539 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
TCRBV7S3A2A0A539 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
TCRBV7S3A2A0A539 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC23.01■■□□□ 1.27
TCRBV7S3A2A0A539 AC004448.1-201ENST00000458332 883 ntBASIC23.01■■□□□ 1.27
TCRBV7S3A2A0A539 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
TCRBV7S3A2A0A539 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC23.01■■□□□ 1.27
TCRBV7S3A2A0A539 AC012354.3-201ENST00000623734 483 ntBASIC23.01■■□□□ 1.27
TCRBV7S3A2A0A539 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
TCRBV7S3A2A0A539 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC23.01■■□□□ 1.27
TCRBV7S3A2A0A539 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC23.01■■□□□ 1.27
TCRBV7S3A2A0A539 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
TCRBV7S3A2A0A539 AC079630.1-202ENST00000618127 1840 ntBASIC23.01■■□□□ 1.27
TCRBV7S3A2A0A539 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC23■■□□□ 1.27
TCRBV7S3A2A0A539 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC23■■□□□ 1.27
TCRBV7S3A2A0A539 EP400NL-214ENST00000641289 2402 ntBASIC23■■□□□ 1.27
TCRBV7S3A2A0A539 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC23■■□□□ 1.27
TCRBV7S3A2A0A539 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
TCRBV7S3A2A0A539 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
TCRBV7S3A2A0A539 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
TCRBV7S3A2A0A539 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC23■■□□□ 1.27
TCRBV7S3A2A0A539 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC23■■□□□ 1.27
TCRBV7S3A2A0A539 MIR4508-201ENST00000584178 70 ntBASIC23■■□□□ 1.27
TCRBV7S3A2A0A539 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC23■■□□□ 1.27
TCRBV7S3A2A0A539 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
TCRBV7S3A2A0A539 COMT-203ENST00000403184 2217 ntTSL 2 BASIC23■■□□□ 1.27
TCRBV7S3A2A0A539 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
TCRBV7S3A2A0A539 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC22.99■■□□□ 1.27
TCRBV7S3A2A0A539 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC22.99■■□□□ 1.27
TCRBV7S3A2A0A539 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
TCRBV7S3A2A0A539 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC22.99■■□□□ 1.27
TCRBV7S3A2A0A539 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC22.99■■□□□ 1.27
TCRBV7S3A2A0A539 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC22.99■■□□□ 1.27
TCRBV7S3A2A0A539 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC22.98■■□□□ 1.27
TCRBV7S3A2A0A539 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
TCRBV7S3A2A0A539 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC22.98■■□□□ 1.27
TCRBV7S3A2A0A539 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC22.98■■□□□ 1.27
TCRBV7S3A2A0A539 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC22.98■■□□□ 1.27
TCRBV7S3A2A0A539 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
TCRBV7S3A2A0A539 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
TCRBV7S3A2A0A539 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC22.98■■□□□ 1.27
TCRBV7S3A2A0A539 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
TCRBV7S3A2A0A539 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC22.98■■□□□ 1.27
TCRBV7S3A2A0A539 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
TCRBV7S3A2A0A539 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC22.98■■□□□ 1.27
TCRBV7S3A2A0A539 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC22.97■■□□□ 1.27
TCRBV7S3A2A0A539 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC22.97■■□□□ 1.27
TCRBV7S3A2A0A539 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
TCRBV7S3A2A0A539 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC22.97■■□□□ 1.27
TCRBV7S3A2A0A539 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC22.97■■□□□ 1.27
TCRBV7S3A2A0A539 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
TCRBV7S3A2A0A539 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC22.97■■□□□ 1.27
TCRBV7S3A2A0A539 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
TCRBV7S3A2A0A539 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC22.97■■□□□ 1.27
TCRBV7S3A2A0A539 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC22.97■■□□□ 1.27
TCRBV7S3A2A0A539 USF2-207ENST00000595068 1612 ntTSL 5 BASIC22.97■■□□□ 1.27
TCRBV7S3A2A0A539 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
TCRBV7S3A2A0A539 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
TCRBV7S3A2A0A539 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC22.96■■□□□ 1.27
TCRBV7S3A2A0A539 KRT8P33-201ENST00000508125 1423 ntBASIC22.96■■□□□ 1.27
TCRBV7S3A2A0A539 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
TCRBV7S3A2A0A539 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC22.95■■□□□ 1.27
TCRBV7S3A2A0A539 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC22.95■■□□□ 1.26
TCRBV7S3A2A0A539 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC22.95■■□□□ 1.26
TCRBV7S3A2A0A539 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
TCRBV7S3A2A0A539 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
Retrieved 100 of 98,524 protein–RNA pairs in 16.9 ms