Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 AL355803.1-201ENST00000455524 188 ntTSL 2 BASIC14.4□□□□□ -0.1
HMGB4Q8WW32 AC011247.2-201ENST00000457097 233 ntTSL 4 BASIC14.4□□□□□ -0.1
HMGB4Q8WW32 REEP5-205ENST00000504247 480 ntTSL 5 BASIC14.4□□□□□ -0.1
HMGB4Q8WW32 REEP5-207ENST00000513339 1139 ntTSL 2 BASIC14.4□□□□□ -0.1
HMGB4Q8WW32 ORAOV1-209ENST00000538554 1000 ntTSL 2 BASIC14.4□□□□□ -0.1
HMGB4Q8WW32 C12orf73-210ENST00000552940 685 ntTSL 2 BASIC14.4□□□□□ -0.1
HMGB4Q8WW32 RN7SL357P-201ENST00000581065 298 ntBASIC14.4□□□□□ -0.1
HMGB4Q8WW32 AC138466.4-201ENST00000623965 852 ntBASIC14.4□□□□□ -0.1
HMGB4Q8WW32 AC138466.5-201ENST00000624002 808 ntBASIC14.4□□□□□ -0.1
HMGB4Q8WW32 LINC00969-294ENST00000627609 992 ntTSL 5 BASIC14.4□□□□□ -0.1
HMGB4Q8WW32 AC009975.2-202ENST00000634539 854 ntTSL 5 BASIC14.4□□□□□ -0.1
HMGB4Q8WW32 HIPK3-203ENST00000456517 7399 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
HMGB4Q8WW32 STAMBPL1-204ENST00000371927 4184 ntTSL 2 BASIC14.4□□□□□ -0.1
HMGB4Q8WW32 SLC34A1-201ENST00000324417 2573 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
HMGB4Q8WW32 ABCA7-203ENST00000435683 6211 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
HMGB4Q8WW32 INSC-208ENST00000530161 1702 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
HMGB4Q8WW32 LETMD1-235ENST00000552739 1713 ntTSL 2 BASIC14.4□□□□□ -0.1
HMGB4Q8WW32 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
HMGB4Q8WW32 LINC02021-201ENST00000504808 1608 ntTSL 3 BASIC14.4□□□□□ -0.1
HMGB4Q8WW32 TTC28-AS1-207ENST00000428584 5859 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
HMGB4Q8WW32 GSTCD-206ENST00000507281 2091 ntTSL 5 BASIC14.4□□□□□ -0.1
HMGB4Q8WW32 CCDC43-203ENST00000588210 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC14.4□□□□□ -0.1
HMGB4Q8WW32 TMEM132E-203ENST00000631683 4379 ntAPPRIS P2 TSL 5 BASIC14.4□□□□□ -0.1
HMGB4Q8WW32 SARS2-202ENST00000430193 1886 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
HMGB4Q8WW32 APTX-211ENST00000463596 1345 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
HMGB4Q8WW32 BCL9L-202ENST00000526143 5514 ntTSL 5 BASIC14.4□□□□□ -0.1
HMGB4Q8WW32 ZNF451-201ENST00000357489 4998 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
HMGB4Q8WW32 GPR137C-201ENST00000321662 3888 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.11
HMGB4Q8WW32 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
HMGB4Q8WW32 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
HMGB4Q8WW32 KIAA1841-201ENST00000295031 3116 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
HMGB4Q8WW32 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
HMGB4Q8WW32 BLCAP-205ENST00000397137 2036 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
HMGB4Q8WW32 OXA1L-212ENST00000604262 1571 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
HMGB4Q8WW32 PRAMEF8-202ENST00000614831 1592 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
HMGB4Q8WW32 PRAMEF7-202ENST00000616979 1592 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
HMGB4Q8WW32 KDELC2-201ENST00000323468 4312 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
HMGB4Q8WW32 C1orf228-218ENST00000458657 1818 ntAPPRIS P2 TSL 5 BASIC14.39□□□□□ -0.11
HMGB4Q8WW32 LINC02537-201ENST00000635943 1367 ntTSL 4 BASIC14.39□□□□□ -0.11
HMGB4Q8WW32 SETD1B-203ENST00000604567 5969 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
HMGB4Q8WW32 PRMT7-203ENST00000449359 2091 ntTSL 2 BASIC14.39□□□□□ -0.11
HMGB4Q8WW32 THY1-206ENST00000528522 2050 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
HMGB4Q8WW32 IL17B-201ENST00000261796 696 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
HMGB4Q8WW32 SSBP1-201ENST00000265304 687 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
HMGB4Q8WW32 Metazoa_SRP.4-201ENST00000366232 298 ntBASIC14.39□□□□□ -0.11
HMGB4Q8WW32 MAPK3-204ENST00000395200 997 ntTSL 3 BASIC14.39□□□□□ -0.11
HMGB4Q8WW32 PTTG1IP-202ENST00000397886 755 ntTSL 4 BASIC14.39□□□□□ -0.11
HMGB4Q8WW32 AC092265.1-201ENST00000422638 498 ntTSL 2 BASIC14.39□□□□□ -0.11
HMGB4Q8WW32 MIR503HG-202ENST00000440570 760 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
HMGB4Q8WW32 IZUMO1R-202ENST00000440961 805 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
HMGB4Q8WW32 AL355376.1-201ENST00000456082 517 ntTSL 3 BASIC14.39□□□□□ -0.11
HMGB4Q8WW32 HOXB-AS3-206ENST00000474040 741 ntTSL 3 BASIC14.39□□□□□ -0.11
HMGB4Q8WW32 SOX2-OT-208ENST00000477928 902 ntTSL 2 BASIC14.39□□□□□ -0.11
HMGB4Q8WW32 LINC00634-202ENST00000505157 222 ntBASIC14.39□□□□□ -0.11
HMGB4Q8WW32 EMP2-203ENST00000536829 781 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
HMGB4Q8WW32 ZNF124-206ENST00000543802 1292 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
HMGB4Q8WW32 ACTN1-AS1-202ENST00000553961 599 ntTSL 4 BASIC14.39□□□□□ -0.11
HMGB4Q8WW32 AC007952.4-201ENST00000573866 637 ntBASIC14.39□□□□□ -0.11
HMGB4Q8WW32 TMEM220-AS1-207ENST00000584714 541 ntTSL 4 BASIC14.39□□□□□ -0.11
HMGB4Q8WW32 SNRPA1-216ENST00000626000 539 ntTSL 5 BASIC14.39□□□□□ -0.11
HMGB4Q8WW32 LAIR1-209ENST00000434277 1645 ntAPPRIS ALT2 TSL 2 BASIC14.39□□□□□ -0.11
HMGB4Q8WW32 FGD4-203ENST00000472289 1629 ntTSL 2 BASIC14.39□□□□□ -0.11
HMGB4Q8WW32 TMPRSS4-211ENST00000522307 1634 ntTSL 2 BASIC14.39□□□□□ -0.11
HMGB4Q8WW32 AC013472.1-203ENST00000380387 1966 ntTSL 4 BASIC14.39□□□□□ -0.11
HMGB4Q8WW32 MX1-218ENST00000619682 1980 ntTSL 5 BASIC14.39□□□□□ -0.11
HMGB4Q8WW32 SLC2A14-202ENST00000396589 2335 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
HMGB4Q8WW32 YPEL1-201ENST00000339468 4329 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
HMGB4Q8WW32 ANKRD23-201ENST00000318357 2597 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
HMGB4Q8WW32 MAOB-201ENST00000378069 2566 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
HMGB4Q8WW32 XKRX-202ENST00000468904 2249 ntTSL 2 BASIC14.39□□□□□ -0.11
HMGB4Q8WW32 OR4D1-202ENST00000641449 4925 ntAPPRIS P1 BASIC14.39□□□□□ -0.11
HMGB4Q8WW32 MAGI1-201ENST00000330909 7415 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
HMGB4Q8WW32 CALN1-201ENST00000329008 9243 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
HMGB4Q8WW32 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
HMGB4Q8WW32 NBEA-201ENST00000310336 10794 ntAPPRIS ALT1 TSL 1 (best) BASIC14.39□□□□□ -0.11
HMGB4Q8WW32 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC14.39□□□□□ -0.11
HMGB4Q8WW32 NRG2-209ENST00000541337 3723 ntTSL 5 BASIC14.39□□□□□ -0.11
HMGB4Q8WW32 CD3EAP-202ENST00000589804 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
HMGB4Q8WW32 NIPA1-201ENST00000337435 6567 ntAPPRIS P4 TSL 1 (best) BASIC14.38□□□□□ -0.11
HMGB4Q8WW32 CYB561-203ENST00000392976 3151 ntAPPRIS P1 TSL 3 BASIC14.38□□□□□ -0.11
HMGB4Q8WW32 COG5-202ENST00000347053 4532 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
HMGB4Q8WW32 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
HMGB4Q8WW32 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
HMGB4Q8WW32 AC010096.1-201ENST00000443897 1709 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
HMGB4Q8WW32 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
HMGB4Q8WW32 NMBR-201ENST00000258042 1354 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
HMGB4Q8WW32 LTF-202ENST00000417439 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
HMGB4Q8WW32 GRSF1-201ENST00000254799 6666 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
HMGB4Q8WW32 TBC1D2-201ENST00000342112 3046 ntTSL 2 BASIC14.38□□□□□ -0.11
HMGB4Q8WW32 FAM76A-203ENST00000373949 2273 ntTSL 2 BASIC14.38□□□□□ -0.11
HMGB4Q8WW32 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC14.38□□□□□ -0.11
HMGB4Q8WW32 ZSCAN5A-206ENST00000587492 1542 ntTSL 2 BASIC14.38□□□□□ -0.11
HMGB4Q8WW32 DNAJC5-201ENST00000360864 5213 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
HMGB4Q8WW32 MRPL32-201ENST00000223324 1035 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
HMGB4Q8WW32 ASNA1-201ENST00000357332 1280 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
HMGB4Q8WW32 TNNT2-203ENST00000367315 1083 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
HMGB4Q8WW32 MIR1227-201ENST00000408484 88 ntBASIC14.38□□□□□ -0.11
HMGB4Q8WW32 Metazoa_SRP.9-201ENST00000415635 283 ntBASIC14.38□□□□□ -0.11
HMGB4Q8WW32 AC098934.1-203ENST00000442868 1262 ntBASIC14.38□□□□□ -0.11
HMGB4Q8WW32 RGS5-216ENST00000449680 788 ntTSL 3 BASIC14.38□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 71.7 ms