Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 CA12-202ENST00000344366 2744 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
SMARCA1P28370 EML4-201ENST00000318522 5549 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
SMARCA1P28370 PPM1M-203ENST00000409502 1790 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
SMARCA1P28370 AL589669.1-201ENST00000639829 1506 ntTSL 5 BASIC16.37■□□□□ 0.21
SMARCA1P28370 SEC61B-201ENST00000223641 545 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
SMARCA1P28370 OR9I1-201ENST00000302610 945 ntAPPRIS P1 BASIC16.37■□□□□ 0.21
SMARCA1P28370 EIF3F-201ENST00000309828 1254 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
SMARCA1P28370 KNCN-202ENST00000396314 608 ntAPPRIS P3 TSL 4 BASIC16.37■□□□□ 0.21
SMARCA1P28370 AC073316.1-202ENST00000402115 988 ntTSL 5 BASIC16.37■□□□□ 0.21
SMARCA1P28370 ZNF226-203ENST00000413984 716 ntTSL 3 BASIC16.37■□□□□ 0.21
SMARCA1P28370 AC012506.3-201ENST00000415245 892 ntTSL 3 BASIC16.37■□□□□ 0.21
SMARCA1P28370 AL590617.2-201ENST00000432673 917 ntTSL 3 BASIC16.37■□□□□ 0.21
SMARCA1P28370 SEC61B-203ENST00000498603 587 ntTSL 3 BASIC16.37■□□□□ 0.21
SMARCA1P28370 SERGEF-208ENST00000528200 1264 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
SMARCA1P28370 CRADD-205ENST00000548483 1056 ntTSL 2 BASIC16.37■□□□□ 0.21
SMARCA1P28370 MFSD11-218ENST00000591864 446 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
SMARCA1P28370 EXOSC5-204ENST00000596905 826 ntTSL 2 BASIC16.37■□□□□ 0.21
SMARCA1P28370 AC007326.1-201ENST00000604539 458 ntBASIC16.37■□□□□ 0.21
SMARCA1P28370 AC051619.9-201ENST00000623237 597 ntBASIC16.37■□□□□ 0.21
SMARCA1P28370 C9orf3-202ENST00000297979 2820 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
SMARCA1P28370 LPAR1-203ENST00000374431 3637 ntAPPRIS P2 TSL 1 (best) BASIC16.37■□□□□ 0.21
SMARCA1P28370 KDM3A-203ENST00000409556 4928 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
SMARCA1P28370 GLIS2-201ENST00000262366 4469 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
SMARCA1P28370 SLC30A5-209ENST00000621204 3999 ntTSL 5 BASIC16.37■□□□□ 0.21
SMARCA1P28370 PKD1P6-NPIPP1-202ENST00000605794 2902 ntTSL 2 BASIC16.37■□□□□ 0.21
SMARCA1P28370 SPON1-201ENST00000576479 4837 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
SMARCA1P28370 DNM1-203ENST00000393594 3245 ntAPPRIS ALT1 TSL 2 BASIC16.37■□□□□ 0.21
SMARCA1P28370 CAMK1D-204ENST00000619168 8153 ntAPPRIS P4 TSL 1 (best) BASIC16.37■□□□□ 0.21
SMARCA1P28370 MPP6-202ENST00000396475 3848 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
SMARCA1P28370 MFAP4-202ENST00000395592 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
SMARCA1P28370 FER1L4-213ENST00000621044 2778 ntTSL 2 BASIC16.37■□□□□ 0.21
SMARCA1P28370 FCRL6-201ENST00000321935 1997 ntAPPRIS ALT2 TSL 2 BASIC16.37■□□□□ 0.21
SMARCA1P28370 GOLGA8EP-201ENST00000530246 1959 ntBASIC16.37■□□□□ 0.21
SMARCA1P28370 ZNF251-201ENST00000292562 2807 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
SMARCA1P28370 FAM198B-203ENST00000585682 4900 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
SMARCA1P28370 ASF1A-201ENST00000229595 2362 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
SMARCA1P28370 APBB1-203ENST00000389906 2684 ntAPPRIS ALT1 TSL 5 BASIC16.36■□□□□ 0.21
SMARCA1P28370 MFRP-205ENST00000619721 3917 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
SMARCA1P28370 TRIM67-202ENST00000444294 9320 ntAPPRIS ALT1 TSL 5 BASIC16.36■□□□□ 0.21
SMARCA1P28370 MAP1S-201ENST00000324096 3419 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
SMARCA1P28370 DSTN-203ENST00000474024 1853 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
SMARCA1P28370 CST5-201ENST00000304710 756 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
SMARCA1P28370 POLD4-201ENST00000312419 918 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
SMARCA1P28370 RASSF3-202ENST00000336061 1030 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
SMARCA1P28370 OPN1MW2-201ENST00000369929 1261 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
SMARCA1P28370 COL5A1-AS1-201ENST00000371813 336 ntTSL 2 BASIC16.36■□□□□ 0.21
SMARCA1P28370 CIDEC-202ENST00000383817 1199 ntAPPRIS ALT1 TSL 1 (best) BASIC16.36■□□□□ 0.21
SMARCA1P28370 RPL13A-201ENST00000391857 1181 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
SMARCA1P28370 AL391832.2-201ENST00000418557 889 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
SMARCA1P28370 RPS27L-203ENST00000439025 970 ntTSL 2 BASIC16.36■□□□□ 0.21
SMARCA1P28370 TEX36-AS1-202ENST00000446081 749 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
SMARCA1P28370 LINC00887-204ENST00000456816 796 ntTSL 3 BASIC16.36■□□□□ 0.21
SMARCA1P28370 RPL18AP8-201ENST00000486071 528 ntBASIC16.36■□□□□ 0.21
SMARCA1P28370 SLC25A15P3-201ENST00000505530 290 ntBASIC16.36■□□□□ 0.21
SMARCA1P28370 ERH-203ENST00000557016 1124 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
SMARCA1P28370 KRT18P8-201ENST00000581937 1246 ntBASIC16.36■□□□□ 0.21
SMARCA1P28370 IMPA2-207ENST00000588927 787 ntTSL 5 BASIC16.36■□□□□ 0.21
SMARCA1P28370 CNOT7-213ENST00000628418 432 ntTSL 5 BASIC16.36■□□□□ 0.21
SMARCA1P28370 EXOC6B-209ENST00000634650 2583 ntTSL 5 BASIC16.36■□□□□ 0.21
SMARCA1P28370 ZNF556-202ENST00000586426 1643 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
SMARCA1P28370 AL157996.1-201ENST00000624684 2299 ntBASIC16.36■□□□□ 0.21
SMARCA1P28370 SMG8-201ENST00000300917 3263 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
SMARCA1P28370 PPP6R1-203ENST00000587283 2953 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
SMARCA1P28370 PAX5-214ENST00000523241 1342 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
SMARCA1P28370 AC005726.3-202ENST00000577814 1316 ntTSL 3 BASIC16.36■□□□□ 0.21
SMARCA1P28370 RBPJ-205ENST00000355476 5990 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
SMARCA1P28370 CAP2P1-201ENST00000557743 1390 ntBASIC16.36■□□□□ 0.21
SMARCA1P28370 GRK6P1-201ENST00000400595 1711 ntBASIC16.36■□□□□ 0.21
SMARCA1P28370 TMEM237-202ENST00000409444 5592 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
SMARCA1P28370 RASGRF2-206ENST00000638442 2842 ntTSL 5 BASIC16.36■□□□□ 0.21
SMARCA1P28370 PIGC-201ENST00000344529 1447 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
SMARCA1P28370 TARBP2-202ENST00000394357 1402 ntTSL 3 BASIC16.36■□□□□ 0.21
SMARCA1P28370 AC061965.1-201ENST00000560524 1465 ntBASIC16.35■□□□□ 0.21
SMARCA1P28370 KIAA1191-201ENST00000298569 2991 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
SMARCA1P28370 RARG-203ENST00000425354 2959 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
SMARCA1P28370 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
SMARCA1P28370 WDR20-203ENST00000335263 2616 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
SMARCA1P28370 ITPK1-207ENST00000555495 3035 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
SMARCA1P28370 LZTS1-202ENST00000381569 5706 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
SMARCA1P28370 PRKAG2-215ENST00000492843 2699 ntTSL 5 BASIC16.35■□□□□ 0.21
SMARCA1P28370 TMCO3-202ENST00000434316 3050 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
SMARCA1P28370 TMEM139-201ENST00000359333 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
SMARCA1P28370 FAM86C1-201ENST00000346333 2010 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
SMARCA1P28370 SPAG8-209ENST00000484764 1618 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
SMARCA1P28370 MYO15B-237ENST00000642007 4893 ntBASIC16.35■□□□□ 0.21
SMARCA1P28370 LAIR2-201ENST00000301202 699 ntAPPRIS P4 TSL 1 (best) BASIC16.35■□□□□ 0.21
SMARCA1P28370 TDP2-201ENST00000341060 2120 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
SMARCA1P28370 PPDPF-202ENST00000370179 868 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
SMARCA1P28370 AC026316.1-201ENST00000398900 414 ntBASIC16.35■□□□□ 0.21
SMARCA1P28370 LY6G6E-227ENST00000409239 776 ntAPPRIS ALT2 TSL 4 BASIC16.35■□□□□ 0.21
SMARCA1P28370 DCAF7-201ENST00000415273 1220 ntTSL 2 BASIC16.35■□□□□ 0.21
SMARCA1P28370 MYLK-AS1-202ENST00000470449 760 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
SMARCA1P28370 NDUFS6P1-201ENST00000485187 316 ntBASIC16.35■□□□□ 0.21
SMARCA1P28370 RCAN1-212ENST00000492600 935 ntTSL 2 BASIC16.35■□□□□ 0.21
SMARCA1P28370 AP001160.1-201ENST00000535817 565 ntTSL 3 BASIC16.35■□□□□ 0.21
SMARCA1P28370 EIF2B1-205ENST00000539951 848 ntTSL 5 BASIC16.35■□□□□ 0.21
SMARCA1P28370 AC025154.2-201ENST00000550530 445 ntTSL 3 BASIC16.35■□□□□ 0.21
SMARCA1P28370 FAM104A-206ENST00000583024 417 ntTSL 3 BASIC16.35■□□□□ 0.21
SMARCA1P28370 CR392039.2-201ENST00000623182 509 ntBASIC16.35■□□□□ 0.21
SMARCA1P28370 CMC2-224ENST00000630396 481 ntTSL 5 BASIC16.35■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 78 ms