Protein–RNA interactions for Protein: O00151

PDLIM1, PDZ and LIM domain protein 1, humanhuman

Predictions only

Length 329 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1O00151 CYP4B1-201ENST00000271153 2171 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
PDLIM1O00151 TMPRSS13-201ENST00000430170 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
PDLIM1O00151 MVP-202ENST00000395353 2925 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
PDLIM1O00151 PI4KB-203ENST00000368874 3934 ntAPPRIS ALT1 TSL 1 (best) BASIC13.82□□□□□ -0.2
PDLIM1O00151 SSBP2-220ENST00000615665 4465 ntTSL 5 BASIC13.82□□□□□ -0.2
PDLIM1O00151 C16orf82-201ENST00000418886 2268 ntAPPRIS ALT2 BASIC13.82□□□□□ -0.2
PDLIM1O00151 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC13.82□□□□□ -0.2
PDLIM1O00151 ADAMTS13-202ENST00000356589 4349 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
PDLIM1O00151 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
PDLIM1O00151 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
PDLIM1O00151 LENEP-202ENST00000392487 555 ntAPPRIS P1 BASIC13.82□□□□□ -0.2
PDLIM1O00151 AC087499.6-201ENST00000411576 835 ntBASIC13.82□□□□□ -0.2
PDLIM1O00151 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
PDLIM1O00151 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC13.82□□□□□ -0.2
PDLIM1O00151 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC13.82□□□□□ -0.2
PDLIM1O00151 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC13.82□□□□□ -0.2
PDLIM1O00151 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC13.82□□□□□ -0.2
PDLIM1O00151 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC13.82□□□□□ -0.2
PDLIM1O00151 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC13.82□□□□□ -0.2
PDLIM1O00151 CDK4-206ENST00000549606 558 ntTSL 2 BASIC13.82□□□□□ -0.2
PDLIM1O00151 AL662799.1-202ENST00000614205 422 ntBASIC13.82□□□□□ -0.2
PDLIM1O00151 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC13.82□□□□□ -0.2
PDLIM1O00151 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
PDLIM1O00151 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC13.82□□□□□ -0.2
PDLIM1O00151 LCOR-203ENST00000371097 4852 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
PDLIM1O00151 NAP1L2-201ENST00000373517 2550 ntAPPRIS P1 BASIC13.82□□□□□ -0.2
PDLIM1O00151 PAK3-208ENST00000446737 2550 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
PDLIM1O00151 KAZN-205ENST00000400798 3643 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
PDLIM1O00151 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC13.82□□□□□ -0.2
PDLIM1O00151 C4B-201ENST00000425700 5237 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
PDLIM1O00151 PRR12-203ENST00000615927 4479 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.2
PDLIM1O00151 AL356966.1-201ENST00000454752 2367 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
PDLIM1O00151 SFI1-229ENST00000540643 4226 ntAPPRIS ALT2 TSL 2 BASIC13.82□□□□□ -0.2
PDLIM1O00151 AL158070.2-201ENST00000623713 1621 ntBASIC13.82□□□□□ -0.2
PDLIM1O00151 VRK3-201ENST00000316763 1938 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
PDLIM1O00151 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC13.82□□□□□ -0.2
PDLIM1O00151 ZNF618-201ENST00000288466 9109 ntAPPRIS P3 TSL 2 BASIC13.82□□□□□ -0.2
PDLIM1O00151 PTCHD3-201ENST00000438700 2529 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
PDLIM1O00151 XRRA1-207ENST00000527087 2505 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
PDLIM1O00151 ARGLU1-203ENST00000400198 3390 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
PDLIM1O00151 PTPN20-206ENST00000395722 1995 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
PDLIM1O00151 ADGRA1-201ENST00000392606 3438 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
PDLIM1O00151 SIGLEC6-201ENST00000343300 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
PDLIM1O00151 CCDC187-203ENST00000569961 3158 ntAPPRIS P2 TSL 1 (best) BASIC13.81□□□□□ -0.2
PDLIM1O00151 SVIL-AS1-204ENST00000427063 2025 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
PDLIM1O00151 ABCB9-201ENST00000280560 3517 ntAPPRIS P2 TSL 1 (best) BASIC13.81□□□□□ -0.2
PDLIM1O00151 AC024075.2-201ENST00000598112 1473 ntBASIC13.81□□□□□ -0.2
PDLIM1O00151 ARMCX3-203ENST00000471229 2051 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
PDLIM1O00151 SFI1-208ENST00000432498 4162 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
PDLIM1O00151 BX005266.2-201ENST00000450704 1549 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
PDLIM1O00151 Z98257.2-202ENST00000641138 1548 ntBASIC13.81□□□□□ -0.2
PDLIM1O00151 FIBCD1-204ENST00000448616 3119 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
PDLIM1O00151 TRMT2B-206ENST00000545398 3106 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
PDLIM1O00151 EGFR-AS1-201ENST00000442411 2806 ntTSL 2 BASIC13.81□□□□□ -0.2
PDLIM1O00151 EDC3-201ENST00000315127 3763 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
PDLIM1O00151 TMEM87A-201ENST00000307216 1598 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
PDLIM1O00151 TRMT11-201ENST00000334379 1565 ntAPPRIS P2 TSL 1 (best) BASIC13.81□□□□□ -0.2
PDLIM1O00151 MLLT6-211ENST00000621332 7578 ntAPPRIS P2 TSL 1 (best) BASIC13.81□□□□□ -0.2
PDLIM1O00151 SECISBP2-202ENST00000375807 3462 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
PDLIM1O00151 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC13.81□□□□□ -0.2
PDLIM1O00151 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC13.81□□□□□ -0.2
PDLIM1O00151 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC13.81□□□□□ -0.2
PDLIM1O00151 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC13.81□□□□□ -0.2
PDLIM1O00151 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC13.81□□□□□ -0.2
PDLIM1O00151 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC13.81□□□□□ -0.2
PDLIM1O00151 BCAT2-203ENST00000545387 1272 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
PDLIM1O00151 TP53TG3HP-202ENST00000569755 579 ntBASIC13.81□□□□□ -0.2
PDLIM1O00151 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC13.81□□□□□ -0.2
PDLIM1O00151 CHCHD2P3-201ENST00000603038 451 ntBASIC13.81□□□□□ -0.2
PDLIM1O00151 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC13.81□□□□□ -0.2
PDLIM1O00151 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
PDLIM1O00151 KRT78-202ENST00000359499 2554 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
PDLIM1O00151 STK25-235ENST00000543554 2556 ntTSL 2 BASIC13.81□□□□□ -0.2
PDLIM1O00151 PLEKHG2-206ENST00000458508 3898 ntAPPRIS ALT2 TSL 2 BASIC13.81□□□□□ -0.2
PDLIM1O00151 AC005014.1-201ENST00000432006 2976 ntBASIC13.81□□□□□ -0.2
PDLIM1O00151 TIPARP-201ENST00000295924 4109 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
PDLIM1O00151 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
PDLIM1O00151 MYLK-201ENST00000346322 5892 ntAPPRIS ALT2 TSL 5 BASIC13.81□□□□□ -0.2
PDLIM1O00151 ODF2-213ENST00000448249 2059 ntTSL 2 BASIC13.81□□□□□ -0.2
PDLIM1O00151 SLC25A17-217ENST00000544408 2060 ntTSL 2 BASIC13.81□□□□□ -0.2
PDLIM1O00151 SRA1-201ENST00000336283 2107 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
PDLIM1O00151 HORMAD1-201ENST00000322343 1771 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
PDLIM1O00151 PAK1IP1-201ENST00000379568 1800 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
PDLIM1O00151 RPP30-202ENST00000371703 2589 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
PDLIM1O00151 CFAP43-201ENST00000278064 2963 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
PDLIM1O00151 STAG3-206ENST00000426455 4450 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
PDLIM1O00151 VAMP7-202ENST00000286448 2646 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
PDLIM1O00151 GDAP1L1-208ENST00000617075 2645 ntTSL 5 BASIC13.8□□□□□ -0.2
PDLIM1O00151 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC13.8□□□□□ -0.2
PDLIM1O00151 NCLP1-201ENST00000445357 1963 ntBASIC13.8□□□□□ -0.2
PDLIM1O00151 ELAVL4-207ENST00000448907 1951 ntTSL 2 BASIC13.8□□□□□ -0.2
PDLIM1O00151 NAALADL1-201ENST00000340252 2376 ntTSL 5 BASIC13.8□□□□□ -0.2
PDLIM1O00151 ZYG11A-201ENST00000371528 4469 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
PDLIM1O00151 FAM187A-201ENST00000331733 3397 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
PDLIM1O00151 CCDC103-204ENST00000417826 3397 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
PDLIM1O00151 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
PDLIM1O00151 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
PDLIM1O00151 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
PDLIM1O00151 PKIG-203ENST00000372887 769 ntTSL 3 BASIC13.8□□□□□ -0.2
PDLIM1O00151 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 42.8 ms