Protein–RNA interactions for Protein: Q96JB5

CDK5RAP3, CDK5 regulatory subunit-associated protein 3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDK5RAP3Q96JB5 FBXO21-202ENST00000427718 4138 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CDK5RAP3Q96JB5 GPR84-202ENST00000551809 2041 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
CDK5RAP3Q96JB5 KCNAB2-212ENST00000458166 1336 ntTSL 2 BASIC16.3■□□□□ 0.2
CDK5RAP3Q96JB5 PAK3-208ENST00000446737 2550 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
CDK5RAP3Q96JB5 ZNF34-201ENST00000343459 1901 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
CDK5RAP3Q96JB5 ELP4-201ENST00000350638 1907 ntAPPRIS ALT1 TSL 5 BASIC16.3■□□□□ 0.2
CDK5RAP3Q96JB5 ZNF34-202ENST00000429371 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
CDK5RAP3Q96JB5 KLK1-201ENST00000301420 866 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CDK5RAP3Q96JB5 ZNF248-202ENST00000374648 1286 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CDK5RAP3Q96JB5 PRTFDC1-202ENST00000376376 741 ntTSL 2 BASIC16.3■□□□□ 0.2
CDK5RAP3Q96JB5 ETV2-201ENST00000379023 926 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
CDK5RAP3Q96JB5 ZFAND2B-203ENST00000409206 1159 ntTSL 2 BASIC16.3■□□□□ 0.2
CDK5RAP3Q96JB5 HNRNPA1P63-201ENST00000427917 963 ntBASIC16.3■□□□□ 0.2
CDK5RAP3Q96JB5 USE1-202ENST00000445667 795 ntAPPRIS ALT1 TSL 5 BASIC16.3■□□□□ 0.2
CDK5RAP3Q96JB5 AL392046.1-202ENST00000457255 521 ntTSL 5 BASIC16.3■□□□□ 0.2
CDK5RAP3Q96JB5 AC005730.2-201ENST00000564549 1184 ntBASIC16.3■□□□□ 0.2
CDK5RAP3Q96JB5 AC129510.1-201ENST00000579979 555 ntTSL 3 BASIC16.3■□□□□ 0.2
CDK5RAP3Q96JB5 AC008403.1-201ENST00000595676 443 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
CDK5RAP3Q96JB5 AL096828.3-201ENST00000615354 462 ntBASIC16.3■□□□□ 0.2
CDK5RAP3Q96JB5 LINC01672-205ENST00000635092 633 ntTSL 5 BASIC16.3■□□□□ 0.2
CDK5RAP3Q96JB5 IER3IP1-202ENST00000639845 832 ntTSL 2 BASIC16.3■□□□□ 0.2
CDK5RAP3Q96JB5 PRKD1-202ENST00000415220 3189 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
CDK5RAP3Q96JB5 TPO-201ENST00000329066 3138 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CDK5RAP3Q96JB5 PLPPR1-201ENST00000374874 2495 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CDK5RAP3Q96JB5 AP004608.1-203ENST00000528482 3679 ntTSL 5 BASIC16.3■□□□□ 0.2
CDK5RAP3Q96JB5 TCF12-201ENST00000267811 6061 ntAPPRIS ALT1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CDK5RAP3Q96JB5 CEMIP-202ENST00000356249 7297 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CDK5RAP3Q96JB5 SELENON-201ENST00000354177 4227 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
CDK5RAP3Q96JB5 ELN-203ENST00000320492 2991 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
CDK5RAP3Q96JB5 EXOC6B-201ENST00000272427 5918 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CDK5RAP3Q96JB5 CICP16-201ENST00000502609 2813 ntBASIC16.3■□□□□ 0.2
CDK5RAP3Q96JB5 ZSCAN32-215ENST00000618425 2788 ntTSL 2 BASIC16.3■□□□□ 0.2
CDK5RAP3Q96JB5 LINC00882-204ENST00000484698 2718 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CDK5RAP3Q96JB5 NUP160-201ENST00000378460 5376 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
CDK5RAP3Q96JB5 ARHGEF26-AS1-204ENST00000491862 2598 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CDK5RAP3Q96JB5 CACNA1G-230ENST00000514717 6699 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
CDK5RAP3Q96JB5 FASN-206ENST00000634990 8407 ntAPPRIS ALT1 TSL 5 BASIC16.29■□□□□ 0.2
CDK5RAP3Q96JB5 MIR193BHG-211ENST00000641433 5365 ntBASIC16.29■□□□□ 0.2
CDK5RAP3Q96JB5 IRAK3-201ENST00000261233 8663 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CDK5RAP3Q96JB5 DDR1-271ENST00000513240 2882 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
CDK5RAP3Q96JB5 ADI1-201ENST00000327435 2391 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CDK5RAP3Q96JB5 PHYHD1-202ENST00000353176 1374 ntTSL 5 BASIC16.29■□□□□ 0.2
CDK5RAP3Q96JB5 IQCE-216ENST00000611775 2289 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
CDK5RAP3Q96JB5 TAOK2-204ENST00000543033 4072 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CDK5RAP3Q96JB5 NUCB1-201ENST00000405315 2668 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
CDK5RAP3Q96JB5 CYP26A1-202ENST00000371531 2245 ntTSL 2 BASIC16.29■□□□□ 0.2
CDK5RAP3Q96JB5 TRIM11-204ENST00000493030 5774 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CDK5RAP3Q96JB5 ALAS2-202ENST00000335854 1795 ntTSL 2 BASIC16.29■□□□□ 0.2
CDK5RAP3Q96JB5 LRIF1-202ENST00000485275 1796 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
CDK5RAP3Q96JB5 TUBB1P2-201ENST00000422712 1306 ntBASIC16.29■□□□□ 0.2
CDK5RAP3Q96JB5 TUBB1P1-201ENST00000503144 1300 ntBASIC16.29■□□□□ 0.2
CDK5RAP3Q96JB5 TUBB8P4-201ENST00000511806 1324 ntBASIC16.29■□□□□ 0.2
CDK5RAP3Q96JB5 WAC-AS1-202ENST00000528337 2608 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CDK5RAP3Q96JB5 TET3-201ENST00000305799 5174 ntTSL 5 BASIC16.29■□□□□ 0.2
CDK5RAP3Q96JB5 MPLKIP-201ENST00000306984 7668 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CDK5RAP3Q96JB5 ATP6V0B-201ENST00000236067 944 ntTSL 2 BASIC16.29■□□□□ 0.2
CDK5RAP3Q96JB5 Metazoa_SRP.6-201ENST00000366384 298 ntBASIC16.29■□□□□ 0.2
CDK5RAP3Q96JB5 HIST1H2AH-201ENST00000377459 387 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
CDK5RAP3Q96JB5 AL365277.1-206ENST00000417869 487 ntTSL 3 BASIC16.29■□□□□ 0.2
CDK5RAP3Q96JB5 BX284668.5-201ENST00000422124 406 ntTSL 2 BASIC16.29■□□□□ 0.2
CDK5RAP3Q96JB5 GOLGA2P4-201ENST00000441462 777 ntBASIC16.29■□□□□ 0.2
CDK5RAP3Q96JB5 ZNF529-AS1-201ENST00000448373 1004 ntTSL 2 BASIC16.29■□□□□ 0.2
CDK5RAP3Q96JB5 ZNF789-204ENST00000448667 1055 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CDK5RAP3Q96JB5 AL365277.1-204ENST00000450157 599 ntTSL 3 BASIC16.29■□□□□ 0.2
CDK5RAP3Q96JB5 ELFN1-AS1-202ENST00000453348 637 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CDK5RAP3Q96JB5 AL365277.1-203ENST00000458207 693 ntTSL 3 BASIC16.29■□□□□ 0.2
CDK5RAP3Q96JB5 ATP6V0B-211ENST00000498664 825 ntTSL 2 BASIC16.29■□□□□ 0.2
CDK5RAP3Q96JB5 NME2-204ENST00000503064 749 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CDK5RAP3Q96JB5 STARD4-205ENST00000505803 803 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
CDK5RAP3Q96JB5 STARD4-207ENST00000509887 1186 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CDK5RAP3Q96JB5 LINC01848-201ENST00000523446 518 ntTSL 3 BASIC16.29■□□□□ 0.2
CDK5RAP3Q96JB5 SNHG9-201ENST00000531523 275 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CDK5RAP3Q96JB5 AC135178.3-201ENST00000583963 531 ntTSL 4 BASIC16.29■□□□□ 0.2
CDK5RAP3Q96JB5 AC008805.1-201ENST00000590892 364 ntBASIC16.29■□□□□ 0.2
CDK5RAP3Q96JB5 KLK3-211ENST00000597483 810 ntTSL 2 BASIC16.29■□□□□ 0.2
CDK5RAP3Q96JB5 AC021016.3-201ENST00000608367 477 ntBASIC16.29■□□□□ 0.2
CDK5RAP3Q96JB5 AC104506.1-201ENST00000609247 429 ntBASIC16.29■□□□□ 0.2
CDK5RAP3Q96JB5 AL008721.1-201ENST00000609964 604 ntBASIC16.29■□□□□ 0.2
CDK5RAP3Q96JB5 AL023803.2-201ENST00000620080 638 ntBASIC16.29■□□□□ 0.2
CDK5RAP3Q96JB5 AC133540.1-201ENST00000620845 1019 ntBASIC16.29■□□□□ 0.2
CDK5RAP3Q96JB5 FP565260.5-201ENST00000623188 479 ntTSL 3 BASIC16.29■□□□□ 0.2
CDK5RAP3Q96JB5 PRDM4-201ENST00000228437 4210 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
CDK5RAP3Q96JB5 IRAK4-212ENST00000551736 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CDK5RAP3Q96JB5 RPS6KC1-208ENST00000614059 4188 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CDK5RAP3Q96JB5 CDH1-213ENST00000612417 2068 ntTSL 5 BASIC16.29■□□□□ 0.2
CDK5RAP3Q96JB5 GPX3-201ENST00000388825 1636 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
CDK5RAP3Q96JB5 PARP1-203ENST00000366794 3958 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CDK5RAP3Q96JB5 KIAA0930-203ENST00000391627 2623 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CDK5RAP3Q96JB5 LINC02551-202ENST00000533812 2203 ntTSL 5 BASIC16.29■□□□□ 0.2
CDK5RAP3Q96JB5 FAM30A-205ENST00000630242 9612 ntTSL 2 BASIC16.29■□□□□ 0.2
CDK5RAP3Q96JB5 SLC51A-201ENST00000296327 1463 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CDK5RAP3Q96JB5 AC009690.1-201ENST00000379915 4374 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
CDK5RAP3Q96JB5 SGCE-204ENST00000428696 1409 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CDK5RAP3Q96JB5 TPM3-206ENST00000330188 2108 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CDK5RAP3Q96JB5 ADAM11-201ENST00000200557 4571 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CDK5RAP3Q96JB5 FGD6-203ENST00000546711 4568 ntTSL 5 BASIC16.28■□□□□ 0.2
CDK5RAP3Q96JB5 P4HA1-205ENST00000440381 2790 ntTSL 3 BASIC16.28■□□□□ 0.2
CDK5RAP3Q96JB5 NXF1-213ENST00000532297 2795 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
CDK5RAP3Q96JB5 AC144522.1-201ENST00000625111 1658 ntBASIC16.28■□□□□ 0.2
CDK5RAP3Q96JB5 WNT5A-202ENST00000474267 6042 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 50.9 ms