Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 ADAMTS7P1-201ENST00000613213 4793 ntBASIC13.65□□□□□ -0.22
SOX3P41225 PEF1-201ENST00000373703 1629 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
SOX3P41225 ADD1-204ENST00000398123 2361 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
SOX3P41225 USP48-213ENST00000529637 3228 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
SOX3P41225 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
SOX3P41225 DBNDD1-203ENST00000392973 2689 ntTSL 2 BASIC13.65□□□□□ -0.22
SOX3P41225 B4GALT3-201ENST00000319769 1911 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
SOX3P41225 C1orf123-201ENST00000294360 1085 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
SOX3P41225 CRIP1-202ENST00000392531 485 ntAPPRIS P1 TSL 2 BASIC13.65□□□□□ -0.22
SOX3P41225 NUDT1-206ENST00000397049 714 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
SOX3P41225 MIR1247-201ENST00000408206 136 ntBASIC13.65□□□□□ -0.22
SOX3P41225 AC010141.1-201ENST00000411585 623 ntBASIC13.65□□□□□ -0.22
SOX3P41225 AC016876.1-201ENST00000415124 352 ntTSL 3 BASIC13.65□□□□□ -0.22
SOX3P41225 MRPS25-203ENST00000444840 1281 ntTSL 2 BASIC13.65□□□□□ -0.22
SOX3P41225 TPT1P11-201ENST00000458482 498 ntBASIC13.65□□□□□ -0.22
SOX3P41225 ZNF767P-206ENST00000513792 565 ntBASIC13.65□□□□□ -0.22
SOX3P41225 PPP1R32-205ENST00000538185 1107 ntTSL 2 BASIC13.65□□□□□ -0.22
SOX3P41225 NR2C2AP-207ENST00000544883 899 ntTSL 2 BASIC13.65□□□□□ -0.22
SOX3P41225 BLOC1S1-205ENST00000551926 531 ntTSL 5 BASIC13.65□□□□□ -0.22
SOX3P41225 VPS18-202ENST00000558474 873 ntTSL 3 BASIC13.65□□□□□ -0.22
SOX3P41225 PLA2G15-209ENST00000566188 1203 ntTSL 2 BASIC13.65□□□□□ -0.22
SOX3P41225 NRN1L-202ENST00000576147 681 ntAPPRIS ALT2 TSL 2 BASIC13.65□□□□□ -0.22
SOX3P41225 AP005329.1-201ENST00000578800 1035 ntTSL 2 BASIC13.65□□□□□ -0.22
SOX3P41225 PRCD-210ENST00000592014 462 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
SOX3P41225 AC244093.1-201ENST00000610837 814 ntBASIC13.65□□□□□ -0.22
SOX3P41225 MIR6787-201ENST00000616675 61 ntBASIC13.65□□□□□ -0.22
SOX3P41225 FAM189A2-201ENST00000257515 2423 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
SOX3P41225 TMEM230-201ENST00000202834 1472 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
SOX3P41225 MN1-201ENST00000302326 7556 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
SOX3P41225 WHRN-202ENST00000362057 3566 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
SOX3P41225 OPRL1-203ENST00000355631 3147 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
SOX3P41225 DHX16-202ENST00000376442 3445 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
SOX3P41225 PRMT7-203ENST00000449359 2091 ntTSL 2 BASIC13.65□□□□□ -0.22
SOX3P41225 NLRX1-204ENST00000409991 3716 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
SOX3P41225 ATXN7-201ENST00000295900 7224 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
SOX3P41225 DEPTOR-201ENST00000286234 2569 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
SOX3P41225 SLC22A12-202ENST00000377567 2599 ntTSL 5 BASIC13.65□□□□□ -0.22
SOX3P41225 SLCO2B1-217ENST00000532236 2593 ntAPPRIS ALT2 TSL 2 BASIC13.65□□□□□ -0.22
SOX3P41225 MBTD1-201ENST00000376381 1420 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
SOX3P41225 AL359915.2-205ENST00000418015 1529 ntTSL 2 BASIC13.64□□□□□ -0.23
SOX3P41225 PKM-220ENST00000568459 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC13.64□□□□□ -0.23
SOX3P41225 CCDC186-202ENST00000369286 1928 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
SOX3P41225 PRSS16-203ENST00000421826 1949 ntTSL 2 BASIC13.64□□□□□ -0.23
SOX3P41225 PEX5L-211ENST00000472994 2235 ntAPPRIS ALT2 TSL 2 BASIC13.64□□□□□ -0.23
SOX3P41225 MGC16275-201ENST00000499670 2501 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
SOX3P41225 SPRED1-201ENST00000299084 7780 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
SOX3P41225 AC026790.1-201ENST00000399760 2941 ntTSL 2 BASIC13.64□□□□□ -0.23
SOX3P41225 CILP2-202ENST00000586018 4234 ntAPPRIS ALT1 TSL 2 BASIC13.64□□□□□ -0.23
SOX3P41225 POLG-201ENST00000268124 4500 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
SOX3P41225 SLC26A8-201ENST00000355574 3463 ntAPPRIS P1 TSL 2 BASIC13.64□□□□□ -0.23
SOX3P41225 SF1-201ENST00000227503 2850 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
SOX3P41225 MKS1-202ENST00000393119 2397 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
SOX3P41225 CUX2-201ENST00000261726 6844 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
SOX3P41225 EPS8L3-202ENST00000361965 1971 ntAPPRIS ALT1 TSL 1 (best) BASIC13.64□□□□□ -0.23
SOX3P41225 KAT5-216ENST00000534650 1875 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
SOX3P41225 AC090826.2-201ENST00000568496 4946 ntTSL 2 BASIC13.64□□□□□ -0.23
SOX3P41225 SEPT12-201ENST00000268231 1469 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
SOX3P41225 SST-201ENST00000287641 618 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
SOX3P41225 PDZK1IP1-201ENST00000294338 846 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
SOX3P41225 AKIP1-201ENST00000299576 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
SOX3P41225 C8orf74-201ENST00000304519 1036 ntAPPRIS P2 TSL 1 (best) BASIC13.64□□□□□ -0.23
SOX3P41225 FZR1-201ENST00000313639 1215 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
SOX3P41225 LSM10-201ENST00000315732 850 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
SOX3P41225 MBD3L5-201ENST00000329753 778 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
SOX3P41225 KRTAP21-2-201ENST00000333892 440 ntAPPRIS P1 BASIC13.64□□□□□ -0.23
SOX3P41225 CD8B-204ENST00000393759 1096 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
SOX3P41225 HNRNPA1P32-201ENST00000396326 963 ntBASIC13.64□□□□□ -0.23
SOX3P41225 SUMO1-204ENST00000409181 784 ntTSL 3 BASIC13.64□□□□□ -0.23
SOX3P41225 SUMO1-207ENST00000409498 779 ntTSL 3 BASIC13.64□□□□□ -0.23
SOX3P41225 AL021707.3-201ENST00000418803 527 ntTSL 5 BASIC13.64□□□□□ -0.23
SOX3P41225 TREML1-202ENST00000426005 981 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
SOX3P41225 OARD1-212ENST00000482515 832 ntTSL 2 BASIC13.64□□□□□ -0.23
SOX3P41225 AC021723.1-201ENST00000486306 515 ntBASIC13.64□□□□□ -0.23
SOX3P41225 ALG3P1-201ENST00000508806 1114 ntBASIC13.64□□□□□ -0.23
SOX3P41225 NAPSB-201ENST00000525179 678 ntTSL 3 BASIC13.64□□□□□ -0.23
SOX3P41225 AP001258.2-201ENST00000529891 490 ntBASIC13.64□□□□□ -0.23
SOX3P41225 AP000911.1-202ENST00000532706 543 ntTSL 4 BASIC13.64□□□□□ -0.23
SOX3P41225 DBNDD1-206ENST00000568838 993 ntTSL 2 BASIC13.64□□□□□ -0.23
SOX3P41225 AC145343.1-201ENST00000579629 650 ntTSL 3 BASIC13.64□□□□□ -0.23
SOX3P41225 MIR4783-201ENST00000580343 82 ntBASIC13.64□□□□□ -0.23
SOX3P41225 AC092634.5-202ENST00000587736 928 ntTSL 2 BASIC13.64□□□□□ -0.23
SOX3P41225 MRPL34-203ENST00000595444 863 ntAPPRIS ALT2 TSL 3 BASIC13.64□□□□□ -0.23
SOX3P41225 AC009955.4-201ENST00000597192 544 ntBASIC13.64□□□□□ -0.23
SOX3P41225 DIO1-215ENST00000610607 796 ntTSL 5 BASIC13.64□□□□□ -0.23
SOX3P41225 BX088702.1-201ENST00000610784 235 ntBASIC13.64□□□□□ -0.23
SOX3P41225 DAAM2-201ENST00000274867 6194 ntAPPRIS ALT1 TSL 1 (best) BASIC13.64□□□□□ -0.23
SOX3P41225 PCMTD2-204ENST00000369758 3212 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
SOX3P41225 GGACT-201ENST00000376250 2804 ntAPPRIS P1 TSL 3 BASIC13.64□□□□□ -0.23
SOX3P41225 FAM129B-202ENST00000373314 3760 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
SOX3P41225 SLC4A7-214ENST00000455077 3775 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
SOX3P41225 RASSF3-204ENST00000542104 3492 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
SOX3P41225 PRKY-203ENST00000528056 7218 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
SOX3P41225 MLXIPL-201ENST00000313375 3278 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
SOX3P41225 NPR1-202ENST00000368680 4236 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
SOX3P41225 ZNF559-202ENST00000393883 5095 ntAPPRIS P3 TSL 2 BASIC13.64□□□□□ -0.23
SOX3P41225 AL589669.1-201ENST00000639829 1506 ntTSL 5 BASIC13.64□□□□□ -0.23
SOX3P41225 ALDH1A3-202ENST00000346623 3104 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
SOX3P41225 CCDC43-203ENST00000588210 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC13.63□□□□□ -0.23
SOX3P41225 SLC4A7-207ENST00000437179 3667 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
SOX3P41225 BOLL-203ENST00000392296 2838 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 96.5 ms