Protein–RNA interactions for Protein: Q86TL0

ATG4D, Cysteine protease ATG4D, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4DQ86TL0 ST3GAL5-203ENST00000393805 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.31
ATG4DQ86TL0 ZSCAN5A-206ENST00000587492 1542 ntTSL 2 BASIC13.08□□□□□ -0.31
ATG4DQ86TL0 AC092535.1-201ENST00000417557 2165 ntTSL 2 BASIC13.08□□□□□ -0.31
ATG4DQ86TL0 CICP4-201ENST00000447359 2812 ntBASIC13.08□□□□□ -0.31
ATG4DQ86TL0 PSMC3-212ENST00000602866 1373 ntAPPRIS ALT1 TSL 1 (best) BASIC13.08□□□□□ -0.31
ATG4DQ86TL0 NBPF26-208ENST00000620612 4602 ntAPPRIS P1 TSL 5 BASIC13.08□□□□□ -0.31
ATG4DQ86TL0 SLC35A1-202ENST00000369556 1720 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
ATG4DQ86TL0 SAMD4B-201ENST00000314471 4519 ntAPPRIS P3 TSL 1 (best) BASIC13.08□□□□□ -0.32
ATG4DQ86TL0 SEMA4F-210ENST00000611975 6007 ntTSL 5 BASIC13.08□□□□□ -0.32
ATG4DQ86TL0 ATP2B3-204ENST00000370186 6742 ntTSL 5 BASIC13.08□□□□□ -0.32
ATG4DQ86TL0 PITPNM3-201ENST00000262483 7086 ntAPPRIS P3 TSL 1 (best) BASIC13.08□□□□□ -0.32
ATG4DQ86TL0 AGFG1-204ENST00000409315 2912 ntTSL 5 BASIC13.08□□□□□ -0.32
ATG4DQ86TL0 CRMP1-205ENST00000512574 2764 ntTSL 2 BASIC13.08□□□□□ -0.32
ATG4DQ86TL0 CDK5RAP2-202ENST00000360190 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
ATG4DQ86TL0 TGOLN2-204ENST00000409015 2276 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
ATG4DQ86TL0 AC011899.2-202ENST00000438047 4302 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
ATG4DQ86TL0 NPFF-201ENST00000267017 592 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
ATG4DQ86TL0 GTSF1-201ENST00000305879 804 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
ATG4DQ86TL0 MBD3L5-201ENST00000329753 778 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
ATG4DQ86TL0 AL022323.1-201ENST00000366110 957 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
ATG4DQ86TL0 EMC3-AS1-202ENST00000366264 559 ntTSL 4 BASIC13.08□□□□□ -0.32
ATG4DQ86TL0 Metazoa_SRP.6-201ENST00000366384 298 ntBASIC13.08□□□□□ -0.32
ATG4DQ86TL0 ZNF248-202ENST00000374648 1286 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
ATG4DQ86TL0 KRT18P36-201ENST00000411618 1276 ntBASIC13.08□□□□□ -0.32
ATG4DQ86TL0 ZNF529-AS1-201ENST00000448373 1004 ntTSL 2 BASIC13.08□□□□□ -0.32
ATG4DQ86TL0 NDRG1-209ENST00000518176 888 ntTSL 2 BASIC13.08□□□□□ -0.32
ATG4DQ86TL0 TUBB8-202ENST00000562809 820 ntTSL 5 BASIC13.08□□□□□ -0.32
ATG4DQ86TL0 AC005730.2-201ENST00000564549 1184 ntBASIC13.08□□□□□ -0.32
ATG4DQ86TL0 AC129510.1-201ENST00000579979 555 ntTSL 3 BASIC13.08□□□□□ -0.32
ATG4DQ86TL0 AC104982.3-201ENST00000581995 514 ntBASIC13.08□□□□□ -0.32
ATG4DQ86TL0 AC021594.1-201ENST00000587174 636 ntTSL 3 BASIC13.08□□□□□ -0.32
ATG4DQ86TL0 AC005324.6-201ENST00000587972 613 ntBASIC13.08□□□□□ -0.32
ATG4DQ86TL0 DHPS-207ENST00000594424 1172 ntTSL 3 BASIC13.08□□□□□ -0.32
ATG4DQ86TL0 AC008403.1-201ENST00000595676 443 ntAPPRIS P1 TSL 2 BASIC13.08□□□□□ -0.32
ATG4DQ86TL0 AC008537.4-201ENST00000595728 1103 ntTSL 5 BASIC13.08□□□□□ -0.32
ATG4DQ86TL0 ALKBH7-202ENST00000596657 603 ntTSL 2 BASIC13.08□□□□□ -0.32
ATG4DQ86TL0 FDPS-221ENST00000612683 1198 ntAPPRIS ALT1 TSL 5 BASIC13.08□□□□□ -0.32
ATG4DQ86TL0 AP000346.4-201ENST00000614827 381 ntBASIC13.08□□□□□ -0.32
ATG4DQ86TL0 FOXF1-201ENST00000262426 3516 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
ATG4DQ86TL0 AL355390.1-201ENST00000325811 2328 ntTSL 2 BASIC13.08□□□□□ -0.32
ATG4DQ86TL0 GPR37-201ENST00000303921 3021 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
ATG4DQ86TL0 NRAS-201ENST00000369535 4449 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
ATG4DQ86TL0 AP4M1-201ENST00000359593 1817 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
ATG4DQ86TL0 GNAI2-201ENST00000266027 2169 ntTSL 2 BASIC13.08□□□□□ -0.32
ATG4DQ86TL0 ZBP1-201ENST00000371173 2195 ntAPPRIS P3 TSL 1 (best) BASIC13.08□□□□□ -0.32
ATG4DQ86TL0 GPR68-203ENST00000531499 2859 ntAPPRIS P2 TSL 1 (best) BASIC13.08□□□□□ -0.32
ATG4DQ86TL0 TPCN1-214ENST00000550785 5345 ntTSL 2 BASIC13.08□□□□□ -0.32
ATG4DQ86TL0 CUL3-202ENST00000344951 6592 ntTSL 2 BASIC13.08□□□□□ -0.32
ATG4DQ86TL0 RGMA-202ENST00000425933 3078 ntAPPRIS ALT2 TSL 5 BASIC13.08□□□□□ -0.32
ATG4DQ86TL0 UGT3A2-201ENST00000282507 2355 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
ATG4DQ86TL0 MAP3K3-203ENST00000577395 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC13.08□□□□□ -0.32
ATG4DQ86TL0 PHF24-201ENST00000242315 5718 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
ATG4DQ86TL0 SPOCK3-210ENST00000506886 2947 ntAPPRIS ALT2 TSL 5 BASIC13.08□□□□□ -0.32
ATG4DQ86TL0 MAP2K4-201ENST00000353533 3826 ntAPPRIS P3 TSL 1 (best) BASIC13.08□□□□□ -0.32
ATG4DQ86TL0 SP8-203ENST00000617581 3496 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
ATG4DQ86TL0 GTF3C4-201ENST00000372146 9043 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
ATG4DQ86TL0 HMOX2-216ENST00000613539 1703 ntTSL 5 BASIC13.08□□□□□ -0.32
ATG4DQ86TL0 DIP2A-201ENST00000400274 7023 ntAPPRIS ALT2 TSL 5 BASIC13.07□□□□□ -0.32
ATG4DQ86TL0 SHROOM2-201ENST00000380913 7447 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
ATG4DQ86TL0 AC082651.3-201ENST00000474667 1947 ntTSL 2 BASIC13.07□□□□□ -0.32
ATG4DQ86TL0 ARHGAP23P1-201ENST00000562773 1937 ntBASIC13.07□□□□□ -0.32
ATG4DQ86TL0 KMT2E-201ENST00000257745 6714 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
ATG4DQ86TL0 OR2V1-202ENST00000641318 2665 ntAPPRIS P1 BASIC13.07□□□□□ -0.32
ATG4DQ86TL0 DDO-202ENST00000368924 2130 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
ATG4DQ86TL0 SPRY2-201ENST00000377102 2708 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
ATG4DQ86TL0 CDK20-201ENST00000325303 2175 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
ATG4DQ86TL0 MBD6-201ENST00000355673 4282 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
ATG4DQ86TL0 SERPING1-201ENST00000278407 2002 ntAPPRIS P2 TSL 1 (best) BASIC13.07□□□□□ -0.32
ATG4DQ86TL0 AOC1-201ENST00000360937 2649 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
ATG4DQ86TL0 MST1-202ENST00000449682 2621 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
ATG4DQ86TL0 PALD1-201ENST00000263563 4555 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
ATG4DQ86TL0 MRC2-202ENST00000446119 3201 ntTSL 2 BASIC13.07□□□□□ -0.32
ATG4DQ86TL0 CCDC88B-201ENST00000301897 870 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
ATG4DQ86TL0 COX8C-201ENST00000342144 533 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
ATG4DQ86TL0 KRTAP2-4-201ENST00000394015 764 ntAPPRIS P1 BASIC13.07□□□□□ -0.32
ATG4DQ86TL0 DYNC1I1-203ENST00000413338 958 ntTSL 2 BASIC13.07□□□□□ -0.32
ATG4DQ86TL0 GPAA1P2-201ENST00000417923 928 ntBASIC13.07□□□□□ -0.32
ATG4DQ86TL0 LINC01694-201ENST00000424569 821 ntTSL 5 BASIC13.07□□□□□ -0.32
ATG4DQ86TL0 MIR663AHG-201ENST00000427348 1213 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
ATG4DQ86TL0 AL451065.1-201ENST00000428958 238 ntTSL 5 BASIC13.07□□□□□ -0.32
ATG4DQ86TL0 LINC01762-204ENST00000434879 436 ntTSL 2 BASIC13.07□□□□□ -0.32
ATG4DQ86TL0 FBXL8-208ENST00000521920 574 ntTSL 4 BASIC13.07□□□□□ -0.32
ATG4DQ86TL0 PGAM1P5-201ENST00000548011 764 ntBASIC13.07□□□□□ -0.32
ATG4DQ86TL0 AL591471.1-201ENST00000621855 229 ntBASIC13.07□□□□□ -0.32
ATG4DQ86TL0 SNX12-206ENST00000622259 661 ntTSL 5 BASIC13.07□□□□□ -0.32
ATG4DQ86TL0 AL008638.5-201ENST00000623814 1298 ntBASIC13.07□□□□□ -0.32
ATG4DQ86TL0 LINC00595-217ENST00000635545 549 ntTSL 4 BASIC13.07□□□□□ -0.32
ATG4DQ86TL0 DSE-202ENST00000359564 4037 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
ATG4DQ86TL0 ZNF674-AS1-201ENST00000421685 2078 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
ATG4DQ86TL0 NOX5-203ENST00000448182 2498 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
ATG4DQ86TL0 FEM1B-201ENST00000306917 7122 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
ATG4DQ86TL0 ZNF362-201ENST00000373428 2936 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
ATG4DQ86TL0 LEMD3-201ENST00000308330 4764 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
ATG4DQ86TL0 PDLIM2-201ENST00000265810 4592 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
ATG4DQ86TL0 SPIN2A-201ENST00000374906 1319 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
ATG4DQ86TL0 ECSIT-209ENST00000591104 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
ATG4DQ86TL0 MYH11-201ENST00000300036 6029 ntAPPRIS P3 TSL 1 (best) BASIC13.07□□□□□ -0.32
ATG4DQ86TL0 LOXHD1-203ENST00000398686 1958 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
ATG4DQ86TL0 G6PD-201ENST00000369620 1799 ntTSL 5 BASIC13.07□□□□□ -0.32
ATG4DQ86TL0 PPM1M-203ENST00000409502 1790 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Retrieved 100 of 98,524 protein–RNA pairs in 55.4 ms