Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 GRIN1-205ENST00000371555 4003 ntTSL 5 BASIC11.23□□□□□ -0.61
CXCL1P09341 SLC5A11-201ENST00000347898 2745 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
CXCL1P09341 PES1-205ENST00000405677 2708 ntTSL 2 BASIC11.23□□□□□ -0.61
CXCL1P09341 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
CXCL1P09341 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC11.23□□□□□ -0.61
CXCL1P09341 NEK11-209ENST00000510688 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC11.23□□□□□ -0.61
CXCL1P09341 DENND1C-201ENST00000381480 2816 ntAPPRIS P3 TSL 1 (best) BASIC11.23□□□□□ -0.61
CXCL1P09341 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC11.23□□□□□ -0.61
CXCL1P09341 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC11.23□□□□□ -0.61
CXCL1P09341 MISP-201ENST00000215582 2871 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
CXCL1P09341 TRMT1L-201ENST00000367506 4392 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
CXCL1P09341 SAMD14-202ENST00000330175 4425 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
CXCL1P09341 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC11.23□□□□□ -0.61
CXCL1P09341 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC11.23□□□□□ -0.61
CXCL1P09341 DNAJB12-202ENST00000394903 3198 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
CXCL1P09341 CDC37-201ENST00000222005 1608 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
CXCL1P09341 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
CXCL1P09341 ARAP1-201ENST00000334211 4942 ntAPPRIS P3 TSL 1 (best) BASIC11.23□□□□□ -0.61
CXCL1P09341 PLA1A-206ENST00000495992 1695 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
CXCL1P09341 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC11.23□□□□□ -0.61
CXCL1P09341 LINC00343-203ENST00000454555 1765 ntTSL 2 BASIC11.23□□□□□ -0.61
CXCL1P09341 HADHB-209ENST00000545822 1870 ntTSL 5 BASIC11.23□□□□□ -0.61
CXCL1P09341 CPLX4-202ENST00000587244 1916 ntTSL 1 (best) BASIC11.23□□□□□ -0.61
CXCL1P09341 AL132642.2-201ENST00000623423 1998 ntBASIC11.23□□□□□ -0.61
CXCL1P09341 SLC5A8-201ENST00000536262 4178 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
CXCL1P09341 CDK5RAP1-202ENST00000346416 2122 ntAPPRIS P1 TSL 1 (best) BASIC11.23□□□□□ -0.61
CXCL1P09341 PLEKHB2-206ENST00000409612 2210 ntAPPRIS ALT1 TSL 2 BASIC11.23□□□□□ -0.61
CXCL1P09341 PARP3-202ENST00000417220 2472 ntAPPRIS P3 TSL 5 BASIC11.23□□□□□ -0.61
CXCL1P09341 FSTL4-207ENST00000621681 2660 ntTSL 5 BASIC11.22□□□□□ -0.61
CXCL1P09341 KIF25-AS1-202ENST00000456585 2795 ntTSL 2 BASIC11.22□□□□□ -0.61
CXCL1P09341 ZNF570-201ENST00000330173 5559 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
CXCL1P09341 GRM4-209ENST00000609222 3176 ntTSL 2 BASIC11.22□□□□□ -0.61
CXCL1P09341 GAS7-219ENST00000585266 3535 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
CXCL1P09341 DUSP22-211ENST00000604971 3824 ntTSL 2 BASIC11.22□□□□□ -0.61
CXCL1P09341 MCFD2-212ENST00000444761 4169 ntTSL 2 BASIC11.22□□□□□ -0.61
CXCL1P09341 ESPNL-202ENST00000409169 4441 ntTSL 5 BASIC11.22□□□□□ -0.61
CXCL1P09341 PRDM15-207ENST00000447207 4928 ntAPPRIS ALT2 TSL 5 BASIC11.22□□□□□ -0.61
CXCL1P09341 RTFDC1-201ENST00000023939 1745 ntTSL 2 BASIC11.22□□□□□ -0.61
CXCL1P09341 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
CXCL1P09341 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
CXCL1P09341 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
CXCL1P09341 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC11.22□□□□□ -0.61
CXCL1P09341 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
CXCL1P09341 EDEM3-202ENST00000367512 6678 ntAPPRIS ALT2 TSL 1 (best) BASIC11.22□□□□□ -0.61
CXCL1P09341 PTPRK-204ENST00000368210 5025 ntAPPRIS ALT2 TSL 5 BASIC11.22□□□□□ -0.61
CXCL1P09341 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC11.22□□□□□ -0.61
CXCL1P09341 IL2RG-203ENST00000374202 1534 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
CXCL1P09341 CNTLN-201ENST00000380641 4871 ntAPPRIS ALT2 TSL 2 BASIC11.22□□□□□ -0.61
CXCL1P09341 LENEP-202ENST00000392487 555 ntAPPRIS P1 BASIC11.22□□□□□ -0.61
CXCL1P09341 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
CXCL1P09341 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC11.22□□□□□ -0.61
CXCL1P09341 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC11.22□□□□□ -0.61
CXCL1P09341 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
CXCL1P09341 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
CXCL1P09341 CSTF2-203ENST00000415585 2074 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
CXCL1P09341 MED15P5-201ENST00000423150 992 ntBASIC11.22□□□□□ -0.61
CXCL1P09341 MKNK2P1-201ENST00000437526 628 ntBASIC11.22□□□□□ -0.61
CXCL1P09341 TBC1D26-201ENST00000437605 1868 ntAPPRIS P1 TSL 5 BASIC11.22□□□□□ -0.61
CXCL1P09341 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC11.22□□□□□ -0.61
CXCL1P09341 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC11.22□□□□□ -0.61
CXCL1P09341 LRRC74B-201ENST00000442047 1179 ntAPPRIS P1 TSL 5 BASIC11.22□□□□□ -0.61
CXCL1P09341 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC11.22□□□□□ -0.61
CXCL1P09341 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC11.22□□□□□ -0.61
CXCL1P09341 DCAF11-204ENST00000446197 4299 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
CXCL1P09341 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
CXCL1P09341 GUCY1B3-202ENST00000502959 2255 ntTSL 2 BASIC11.22□□□□□ -0.61
CXCL1P09341 PIGG-208ENST00000504346 3019 ntTSL 2 BASIC11.22□□□□□ -0.61
CXCL1P09341 TMEM25-208ENST00000524725 2630 ntAPPRIS ALT2 TSL 2 BASIC11.22□□□□□ -0.61
CXCL1P09341 BAIAP2L1-201ENST00000005260 3622 ntAPPRIS P1 TSL 1 (best) BASIC11.22□□□□□ -0.61
CXCL1P09341 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC11.22□□□□□ -0.61
CXCL1P09341 CNTROB-203ENST00000565740 2783 ntAPPRIS ALT2 TSL 5 BASIC11.22□□□□□ -0.61
CXCL1P09341 C16orf45-209ENST00000566490 1854 ntTSL 5 BASIC11.22□□□□□ -0.61
CXCL1P09341 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC11.22□□□□□ -0.61
CXCL1P09341 LINC01864-201ENST00000587218 1661 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
CXCL1P09341 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC11.22□□□□□ -0.61
CXCL1P09341 RN7SL828P-201ENST00000607615 303 ntBASIC11.22□□□□□ -0.61
CXCL1P09341 MIR6074-201ENST00000612054 107 ntBASIC11.22□□□□□ -0.61
CXCL1P09341 AC021752.1-202ENST00000613161 2398 ntTSL 2 BASIC11.22□□□□□ -0.61
CXCL1P09341 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC11.22□□□□□ -0.61
CXCL1P09341 PCDHB2-201ENST00000194155 4126 ntAPPRIS P1 BASIC11.22□□□□□ -0.61
CXCL1P09341 KCNC2-201ENST00000298972 3563 ntAPPRIS ALT2 TSL 5 BASIC11.22□□□□□ -0.61
CXCL1P09341 SPHK2-208ENST00000599029 3085 ntAPPRIS ALT2 TSL 1 (best) BASIC11.22□□□□□ -0.61
CXCL1P09341 TJAP1-202ENST00000372444 2778 ntAPPRIS P1 TSL 5 BASIC11.22□□□□□ -0.61
CXCL1P09341 TJAP1-203ENST00000372445 2751 ntTSL 1 (best) BASIC11.22□□□□□ -0.61
CXCL1P09341 PASK-204ENST00000405260 4942 ntAPPRIS P3 TSL 5 BASIC11.21□□□□□ -0.61
CXCL1P09341 EEF2KMT-201ENST00000427587 2390 ntAPPRIS P4 TSL 1 (best) BASIC11.21□□□□□ -0.61
CXCL1P09341 PRKAR1A-203ENST00000392711 4327 ntAPPRIS P1 TSL 5 BASIC11.21□□□□□ -0.61
CXCL1P09341 AC068580.3-201ENST00000449248 2015 ntTSL 1 (best) BASIC11.21□□□□□ -0.61
CXCL1P09341 FGGY-201ENST00000303721 1976 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
CXCL1P09341 ITGB8-201ENST00000222573 8751 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
CXCL1P09341 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC11.21□□□□□ -0.61
CXCL1P09341 PPP2R5E-201ENST00000337537 6659 ntAPPRIS P3 TSL 1 (best) BASIC11.21□□□□□ -0.61
CXCL1P09341 DNMT1-203ENST00000540357 4916 ntTSL 5 BASIC11.21□□□□□ -0.61
CXCL1P09341 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC11.21□□□□□ -0.61
CXCL1P09341 SLC35E2B-205ENST00000617444 6283 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
CXCL1P09341 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC11.21□□□□□ -0.61
CXCL1P09341 MYLK-203ENST00000359169 7585 ntAPPRIS P3 TSL 5 BASIC11.21□□□□□ -0.61
CXCL1P09341 KIAA1324-210ENST00000529753 2903 ntTSL 1 (best) BASIC11.21□□□□□ -0.61
CXCL1P09341 RBMS1-201ENST00000348849 4273 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.61
CXCL1P09341 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC11.21□□□□□ -0.61
Retrieved 100 of 98,524 protein–RNA pairs in 40.5 ms