Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 FRMPD2B-201ENST00000431305 1347 ntBASIC16.93■□□□□ 0.3
NUP88Q99567 AC104667.2-202ENST00000452801 1301 ntTSL 2 BASIC16.93■□□□□ 0.3
NUP88Q99567 INSC-208ENST00000530161 1702 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
NUP88Q99567 TNN-203ENST00000622870 3719 ntTSL 5 BASIC16.93■□□□□ 0.3
NUP88Q99567 PPIL6-202ENST00000424445 4031 ntTSL 5 BASIC16.93■□□□□ 0.3
NUP88Q99567 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
NUP88Q99567 DPY19L2P2-201ENST00000312132 4078 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
NUP88Q99567 FRMD5-201ENST00000402883 4091 ntTSL 5 BASIC16.92■□□□□ 0.3
NUP88Q99567 TGM6-202ENST00000381423 2158 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
NUP88Q99567 SEZ6L-209ENST00000529632 6534 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
NUP88Q99567 SMARCA4-214ENST00000589677 5181 ntAPPRIS ALT1 TSL 5 BASIC16.92■□□□□ 0.3
NUP88Q99567 ADGRG2-207ENST00000379869 4768 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
NUP88Q99567 SPIDR-201ENST00000297423 3988 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
NUP88Q99567 NUP50-201ENST00000347635 5233 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
NUP88Q99567 HTR7-203ENST00000371719 3033 ntAPPRIS ALT1 TSL 1 (best) BASIC16.92■□□□□ 0.3
NUP88Q99567 RSPRY1-202ENST00000537866 3586 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
NUP88Q99567 TCL1A-203ENST00000554012 1391 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
NUP88Q99567 LINC01010-201ENST00000431422 2069 ntTSL 2 BASIC16.92■□□□□ 0.3
NUP88Q99567 LINC01864-201ENST00000587218 1661 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
NUP88Q99567 YTHDF3-216ENST00000623280 5193 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
NUP88Q99567 AKNA-206ENST00000374088 5464 ntAPPRIS P2 TSL 2 BASIC16.92■□□□□ 0.3
NUP88Q99567 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
NUP88Q99567 AL354702.1-201ENST00000442006 1960 ntBASIC16.92■□□□□ 0.3
NUP88Q99567 MYL12B-201ENST00000237500 1210 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
NUP88Q99567 TOMM7-201ENST00000358435 778 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
NUP88Q99567 CALCA-203ENST00000396372 581 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
NUP88Q99567 RPL8P2-201ENST00000430538 502 ntBASIC16.92■□□□□ 0.3
NUP88Q99567 AP000356.1-201ENST00000438893 364 ntTSL 3 BASIC16.92■□□□□ 0.3
NUP88Q99567 LINC02046-201ENST00000469812 378 ntTSL 3 BASIC16.92■□□□□ 0.3
NUP88Q99567 TAPBP-241ENST00000489157 1299 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
NUP88Q99567 AC078852.2-201ENST00000504748 527 ntTSL 5 BASIC16.92■□□□□ 0.3
NUP88Q99567 PARP8-218ENST00000513738 596 ntTSL 4 BASIC16.92■□□□□ 0.3
NUP88Q99567 PGAM1P5-201ENST00000548011 764 ntBASIC16.92■□□□□ 0.3
NUP88Q99567 AC145207.3-201ENST00000576784 529 ntTSL 5 BASIC16.92■□□□□ 0.3
NUP88Q99567 AC010754.1-201ENST00000582300 1061 ntTSL 3 BASIC16.92■□□□□ 0.3
NUP88Q99567 IMPA2-207ENST00000588927 787 ntTSL 5 BASIC16.92■□□□□ 0.3
NUP88Q99567 BX537318.1-201ENST00000608290 1207 ntTSL 5 BASIC16.92■□□□□ 0.3
NUP88Q99567 Metazoa_SRP.69-201ENST00000615730 281 ntBASIC16.92■□□□□ 0.3
NUP88Q99567 SLC12A5-216ENST00000626701 617 ntTSL 3 BASIC16.92■□□□□ 0.3
NUP88Q99567 RETN-203ENST00000629642 400 ntTSL 5 BASIC16.92■□□□□ 0.3
NUP88Q99567 AC128714.1-201ENST00000637035 887 ntBASIC16.92■□□□□ 0.3
NUP88Q99567 TSPAN14-210ENST00000616406 2436 ntTSL 2 BASIC16.92■□□□□ 0.3
NUP88Q99567 FBXL21-202ENST00000467490 1742 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
NUP88Q99567 FCHSD2-204ENST00000409418 3154 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
NUP88Q99567 GREM1-202ENST00000560830 2648 ntTSL 2 BASIC16.92■□□□□ 0.3
NUP88Q99567 TFE3-201ENST00000315869 3415 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
NUP88Q99567 SLC16A9-202ENST00000395348 4178 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
NUP88Q99567 ZC3HAV1-204ENST00000471652 3182 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
NUP88Q99567 EIF3J-AS1-201ENST00000313807 2863 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
NUP88Q99567 HECW1-203ENST00000453890 5169 ntAPPRIS ALT2 TSL 2 BASIC16.91■□□□□ 0.3
NUP88Q99567 METTL17-221ENST00000556670 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
NUP88Q99567 MINDY2-203ENST00000559228 9238 ntAPPRIS P3 TSL 2 BASIC16.91■□□□□ 0.3
NUP88Q99567 RUNX3-201ENST00000308873 3861 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
NUP88Q99567 ATG4B-206ENST00000405546 3294 ntTSL 2 BASIC16.91■□□□□ 0.3
NUP88Q99567 PRSS8-201ENST00000317508 1872 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
NUP88Q99567 PLAG1-203ENST00000429357 1899 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
NUP88Q99567 FAM103A1-201ENST00000304191 1568 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
NUP88Q99567 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
NUP88Q99567 ZNF664-202ENST00000392404 4262 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
NUP88Q99567 NCBP2-206ENST00000447325 2216 ntTSL 2 BASIC16.91■□□□□ 0.3
NUP88Q99567 C15orf52-206ENST00000559313 3022 ntAPPRIS P2 TSL 5 BASIC16.91■□□□□ 0.3
NUP88Q99567 TMSB10-201ENST00000233143 496 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
NUP88Q99567 RPS9-201ENST00000302907 829 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
NUP88Q99567 CRB3-201ENST00000308243 631 ntAPPRIS ALT2 TSL 2 BASIC16.91■□□□□ 0.3
NUP88Q99567 ZDHHC4-201ENST00000335965 1259 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
NUP88Q99567 RNA5SP359-201ENST00000364838 113 ntBASIC16.91■□□□□ 0.3
NUP88Q99567 LINC00313-205ENST00000427188 967 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
NUP88Q99567 TSPY25P-201ENST00000429463 745 ntBASIC16.91■□□□□ 0.3
NUP88Q99567 AC069218.1-201ENST00000435269 762 ntBASIC16.91■□□□□ 0.3
NUP88Q99567 FGFR3P1-201ENST00000449999 601 ntBASIC16.91■□□□□ 0.3
NUP88Q99567 AC025165.3-201ENST00000471530 679 ntTSL 5 BASIC16.91■□□□□ 0.3
NUP88Q99567 PRKRA-211ENST00000487082 1211 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
NUP88Q99567 AC138230.1-201ENST00000525893 664 ntTSL 5 BASIC16.91■□□□□ 0.3
NUP88Q99567 AC026803.1-201ENST00000569130 274 ntBASIC16.91■□□□□ 0.3
NUP88Q99567 AC008743.1-201ENST00000596350 813 ntTSL 4 BASIC16.91■□□□□ 0.3
NUP88Q99567 ZNF350-AS1-202ENST00000600253 577 ntTSL 4 BASIC16.91■□□□□ 0.3
NUP88Q99567 PRMT7-203ENST00000449359 2091 ntTSL 2 BASIC16.91■□□□□ 0.3
NUP88Q99567 THY1-206ENST00000528522 2050 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
NUP88Q99567 TTC39A-208ENST00000413473 2718 ntAPPRIS P4 TSL 1 (best) BASIC16.91■□□□□ 0.3
NUP88Q99567 RUNX1T1-251ENST00000615601 7372 ntAPPRIS ALT1 TSL 5 BASIC16.91■□□□□ 0.3
NUP88Q99567 GDAP1L1-207ENST00000612599 2585 ntTSL 3 BASIC16.91■□□□□ 0.3
NUP88Q99567 G6PD-201ENST00000369620 1799 ntTSL 5 BASIC16.91■□□□□ 0.3
NUP88Q99567 LRIF1-202ENST00000485275 1796 ntAPPRIS ALT2 TSL 2 BASIC16.91■□□□□ 0.3
NUP88Q99567 SRPX-205ENST00000538295 1780 ntAPPRIS ALT2 TSL 2 BASIC16.91■□□□□ 0.3
NUP88Q99567 UHRF1BP1L-201ENST00000279907 5168 ntAPPRIS P4 TSL 1 (best) BASIC16.91■□□□□ 0.3
NUP88Q99567 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
NUP88Q99567 GALNTL6-205ENST00000511251 2905 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
NUP88Q99567 BSDC1-203ENST00000419121 1473 ntTSL 2 BASIC16.91■□□□□ 0.3
NUP88Q99567 FOSB-213ENST00000615753 1468 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
NUP88Q99567 AC013472.1-203ENST00000380387 1966 ntTSL 4 BASIC16.91■□□□□ 0.3
NUP88Q99567 IRF9-202ENST00000396864 1838 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
NUP88Q99567 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC16.91■□□□□ 0.3
NUP88Q99567 SLC1A7-206ENST00000620347 2873 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
NUP88Q99567 NRAS-201ENST00000369535 4449 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
NUP88Q99567 RNF222-202ENST00000399398 3062 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
NUP88Q99567 TMCO3-202ENST00000434316 3050 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
NUP88Q99567 CCDC50-201ENST00000392455 8429 ntAPPRIS ALT1 TSL 1 (best) BASIC16.9■□□□□ 0.3
NUP88Q99567 LINC00665-206ENST00000590622 1749 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
NUP88Q99567 PKN1-202ENST00000342216 2960 ntTSL 2 BASIC16.9■□□□□ 0.3
NUP88Q99567 DUS2-201ENST00000358896 1933 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 80.5 ms