Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 AC136475.7-201ENST00000602949 592 ntBASIC16.82■□□□□ 0.28
BRCA1P38398 AC008993.3-201ENST00000633603 631 ntTSL 5 BASIC16.82■□□□□ 0.28
BRCA1P38398 PNLIP-201ENST00000369221 1483 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
BRCA1P38398 KRT8P25-201ENST00000473150 1456 ntBASIC16.82■□□□□ 0.28
BRCA1P38398 AC008125.1-201ENST00000548488 1538 ntTSL 5 BASIC16.82■□□□□ 0.28
BRCA1P38398 FP565260.2-201ENST00000623476 1599 ntAPPRIS P1 TSL 3 BASIC16.82■□□□□ 0.28
BRCA1P38398 NRADDP-202ENST00000641269 1585 ntBASIC16.82■□□□□ 0.28
BRCA1P38398 DDX59-206ENST00000447706 2900 ntTSL 2 BASIC16.82■□□□□ 0.28
BRCA1P38398 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
BRCA1P38398 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC16.82■□□□□ 0.28
BRCA1P38398 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
BRCA1P38398 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
BRCA1P38398 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
BRCA1P38398 GPD2-208ENST00000438166 2457 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
BRCA1P38398 CPNE2-204ENST00000565874 1976 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
BRCA1P38398 CYB5D2-201ENST00000301391 1910 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
BRCA1P38398 AC002350.2-201ENST00000623894 1828 ntBASIC16.82■□□□□ 0.28
BRCA1P38398 AADACL4-201ENST00000376221 1575 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
BRCA1P38398 BORCS8-202ENST00000462790 1429 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
BRCA1P38398 VPREB3-201ENST00000248948 610 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
BRCA1P38398 GAST-201ENST00000329402 470 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
BRCA1P38398 COA6-201ENST00000366612 1013 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
BRCA1P38398 VPREB3-202ENST00000398465 503 ntTSL 3 BASIC16.82■□□□□ 0.28
BRCA1P38398 AC015818.3-201ENST00000583797 589 ntBASIC16.82■□□□□ 0.28
BRCA1P38398 NRSN2-206ENST00000608736 712 ntTSL 3 BASIC16.82■□□□□ 0.28
BRCA1P38398 TNFRSF10A-204ENST00000613472 978 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
BRCA1P38398 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
BRCA1P38398 C2orf68-201ENST00000306336 2837 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
BRCA1P38398 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
BRCA1P38398 AL513477.1-201ENST00000602865 2407 ntBASIC16.81■□□□□ 0.28
BRCA1P38398 RERG-201ENST00000256953 2264 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
BRCA1P38398 LILRB3-201ENST00000245620 2066 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
BRCA1P38398 SLC1A5-202ENST00000434726 1872 ntTSL 2 BASIC16.81■□□□□ 0.28
BRCA1P38398 RDH12-203ENST00000551171 1879 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
BRCA1P38398 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
BRCA1P38398 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
BRCA1P38398 CASP8-212ENST00000432109 1629 ntAPPRIS P4 TSL 5 BASIC16.81■□□□□ 0.28
BRCA1P38398 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
BRCA1P38398 HSPA1L-201ENST00000375654 2544 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
BRCA1P38398 BIN3-205ENST00000519513 1431 ntTSL 2 BASIC16.81■□□□□ 0.28
BRCA1P38398 TRIB1-203ENST00000520847 1332 ntTSL 2 BASIC16.81■□□□□ 0.28
BRCA1P38398 MIR181D-201ENST00000384853 137 ntBASIC16.81■□□□□ 0.28
BRCA1P38398 TISP43-202ENST00000409982 1039 ntAPPRIS P5 TSL 1 (best) BASIC16.81■□□□□ 0.28
BRCA1P38398 RN7SL479P-201ENST00000472003 300 ntBASIC16.81■□□□□ 0.28
BRCA1P38398 LINC02130-201ENST00000566054 518 ntTSL 2 BASIC16.81■□□□□ 0.28
BRCA1P38398 Metazoa_SRP.122-201ENST00000610476 285 ntBASIC16.81■□□□□ 0.28
BRCA1P38398 IL4R-219ENST00000628578 201 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
BRCA1P38398 DUX4L33-201ENST00000635217 958 ntBASIC16.81■□□□□ 0.28
BRCA1P38398 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
BRCA1P38398 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
BRCA1P38398 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
BRCA1P38398 MAGEA4-202ENST00000360243 1773 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
BRCA1P38398 MAGEA4-203ENST00000370335 1773 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
BRCA1P38398 MAGEA4-204ENST00000370340 1773 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
BRCA1P38398 CBX6-201ENST00000216083 3191 ntAPPRIS ALT2 TSL 2 BASIC16.81■□□□□ 0.28
BRCA1P38398 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
BRCA1P38398 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC16.81■□□□□ 0.28
BRCA1P38398 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
BRCA1P38398 ADAM15-201ENST00000271836 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
BRCA1P38398 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
BRCA1P38398 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
BRCA1P38398 ERLIN1-202ENST00000407654 1453 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
BRCA1P38398 CREB5-202ENST00000396298 2001 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
BRCA1P38398 INHBA-205ENST00000638023 2002 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
BRCA1P38398 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
BRCA1P38398 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
BRCA1P38398 TSFM-207ENST00000540550 1935 ntTSL 2 BASIC16.8■□□□□ 0.28
BRCA1P38398 SLC7A8-214ENST00000621729 1371 ntTSL 5 BASIC16.8■□□□□ 0.28
BRCA1P38398 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
BRCA1P38398 TRMT11-202ENST00000368332 1889 ntAPPRIS ALT1 TSL 2 BASIC16.8■□□□□ 0.28
BRCA1P38398 EDDM3B-201ENST00000326783 896 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
BRCA1P38398 IGLJ1-201ENST00000390320 127 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
BRCA1P38398 RN7SL677P-201ENST00000466970 319 ntBASIC16.8■□□□□ 0.28
BRCA1P38398 TRAPPC4-212ENST00000533058 1209 ntTSL 2 BASIC16.8■□□□□ 0.28
BRCA1P38398 DDX11L8-201ENST00000535849 366 ntBASIC16.8■□□□□ 0.28
BRCA1P38398 ALG10-202ENST00000538927 571 ntTSL 5 BASIC16.8■□□□□ 0.28
BRCA1P38398 AC078878.2-201ENST00000543451 286 ntTSL 5 BASIC16.8■□□□□ 0.28
BRCA1P38398 PAX8-AS1-219ENST00000623306 840 ntTSL 5 BASIC16.8■□□□□ 0.28
BRCA1P38398 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
BRCA1P38398 AP1M2-201ENST00000250244 1749 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
BRCA1P38398 DLX4-206ENST00000611342 1662 ntBASIC16.8■□□□□ 0.28
BRCA1P38398 SPATA7-203ENST00000393545 2123 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
BRCA1P38398 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
BRCA1P38398 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
BRCA1P38398 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
BRCA1P38398 BPI-201ENST00000262865 1874 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
BRCA1P38398 ORMDL3-202ENST00000394169 2230 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
BRCA1P38398 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
BRCA1P38398 SPIN3-245ENST00000640768 1722 ntTSL 5 BASIC16.8■□□□□ 0.28
BRCA1P38398 ZCCHC7-201ENST00000322831 1219 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
BRCA1P38398 KDM5C-IT1-201ENST00000412242 755 ntTSL 5 BASIC16.8■□□□□ 0.28
BRCA1P38398 AP005273.1-201ENST00000444862 522 ntTSL 3 BASIC16.8■□□□□ 0.28
BRCA1P38398 RPSAP16-201ENST00000447583 821 ntBASIC16.8■□□□□ 0.28
BRCA1P38398 AC022121.1-201ENST00000484584 579 ntBASIC16.8■□□□□ 0.28
BRCA1P38398 ANAPC15-209ENST00000538919 849 ntAPPRIS P3 TSL 3 BASIC16.8■□□□□ 0.28
BRCA1P38398 BCAT2-203ENST00000545387 1272 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
BRCA1P38398 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
BRCA1P38398 ZNF34-201ENST00000343459 1901 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
BRCA1P38398 ZNF34-202ENST00000429371 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
BRCA1P38398 CEP295NL-205ENST00000619342 1866 ntTSL 5 BASIC16.79■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 54.9 ms