Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 PLAU-202ENST00000446342 2658 ntAPPRIS ALT2 TSL 2 BASIC14.57□□□□□ -0.08
VPS9D1Q9Y2B5 RIC1-201ENST00000251879 4127 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
VPS9D1Q9Y2B5 AC016397.2-201ENST00000624848 1985 ntBASIC14.57□□□□□ -0.08
VPS9D1Q9Y2B5 ABCA7-202ENST00000433129 6704 ntAPPRIS P2 TSL 1 (best) BASIC14.57□□□□□ -0.08
VPS9D1Q9Y2B5 BATF-201ENST00000286639 980 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
VPS9D1Q9Y2B5 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC14.57□□□□□ -0.08
VPS9D1Q9Y2B5 PLSCR2-201ENST00000336685 1272 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
VPS9D1Q9Y2B5 CDK2-202ENST00000354056 1260 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
VPS9D1Q9Y2B5 FAM27C-201ENST00000377542 616 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
VPS9D1Q9Y2B5 PSORS1C3-201ENST00000412143 593 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
VPS9D1Q9Y2B5 MTCYBP32-201ENST00000427945 1084 ntBASIC14.57□□□□□ -0.08
VPS9D1Q9Y2B5 SKA2-202ENST00000437036 625 ntTSL 2 BASIC14.57□□□□□ -0.08
VPS9D1Q9Y2B5 AC234783.1-201ENST00000441761 496 ntBASIC14.57□□□□□ -0.08
VPS9D1Q9Y2B5 AL162457.2-202ENST00000442888 679 ntTSL 5 BASIC14.57□□□□□ -0.08
VPS9D1Q9Y2B5 HOMER2P2-201ENST00000451621 847 ntBASIC14.57□□□□□ -0.08
VPS9D1Q9Y2B5 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC14.57□□□□□ -0.08
VPS9D1Q9Y2B5 NCK2-206ENST00000522586 490 ntTSL 5 BASIC14.57□□□□□ -0.08
VPS9D1Q9Y2B5 C11orf98-201ENST00000524958 654 ntAPPRIS P1 TSL 2 BASIC14.57□□□□□ -0.08
VPS9D1Q9Y2B5 C2orf69P2-201ENST00000562032 1123 ntBASIC14.57□□□□□ -0.08
VPS9D1Q9Y2B5 MIR4683-201ENST00000579659 81 ntBASIC14.57□□□□□ -0.08
VPS9D1Q9Y2B5 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC14.57□□□□□ -0.08
VPS9D1Q9Y2B5 PPY2P-201ENST00000582808 702 ntBASIC14.57□□□□□ -0.08
VPS9D1Q9Y2B5 PPY2P-202ENST00000583761 657 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
VPS9D1Q9Y2B5 TUBB6-210ENST00000590967 430 ntTSL 3 BASIC14.57□□□□□ -0.08
VPS9D1Q9Y2B5 AL358472.3-201ENST00000608147 415 ntBASIC14.57□□□□□ -0.08
VPS9D1Q9Y2B5 HTT-AS1_1.1-201ENST00000612914 230 ntBASIC14.57□□□□□ -0.08
VPS9D1Q9Y2B5 NPIPB11-202ENST00000614927 1216 ntTSL 5 BASIC14.57□□□□□ -0.08
VPS9D1Q9Y2B5 OR5H6-201ENST00000615035 1113 ntAPPRIS P1 BASIC14.57□□□□□ -0.08
VPS9D1Q9Y2B5 AL136301.1-201ENST00000615830 422 ntBASIC14.57□□□□□ -0.08
VPS9D1Q9Y2B5 CPN2-202ENST00000429275 2008 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
VPS9D1Q9Y2B5 REM1-201ENST00000201979 1665 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
VPS9D1Q9Y2B5 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
VPS9D1Q9Y2B5 PIN4-203ENST00000373669 1321 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
VPS9D1Q9Y2B5 CRLS1-201ENST00000378863 3958 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
VPS9D1Q9Y2B5 AC099850.1-201ENST00000451775 1338 ntTSL 2 BASIC14.57□□□□□ -0.08
VPS9D1Q9Y2B5 AC064801.2-201ENST00000625052 1303 ntBASIC14.57□□□□□ -0.08
VPS9D1Q9Y2B5 RIC8B-202ENST00000392837 5135 ntAPPRIS ALT2 TSL 5 BASIC14.57□□□□□ -0.08
VPS9D1Q9Y2B5 FERMT3-201ENST00000279227 2489 ntAPPRIS P4 TSL 1 (best) BASIC14.57□□□□□ -0.08
VPS9D1Q9Y2B5 FERMT3-202ENST00000345728 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC14.57□□□□□ -0.08
VPS9D1Q9Y2B5 CCDC32-201ENST00000358005 1704 ntAPPRIS P1 TSL 2 BASIC14.57□□□□□ -0.08
VPS9D1Q9Y2B5 COL9A1-204ENST00000370496 1372 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
VPS9D1Q9Y2B5 NFE2L2-204ENST00000423513 1382 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
VPS9D1Q9Y2B5 SLCO2B1-217ENST00000532236 2593 ntAPPRIS ALT2 TSL 2 BASIC14.57□□□□□ -0.08
VPS9D1Q9Y2B5 GDAP1L1-207ENST00000612599 2585 ntTSL 3 BASIC14.57□□□□□ -0.08
VPS9D1Q9Y2B5 HOXB4-201ENST00000332503 3757 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
VPS9D1Q9Y2B5 ILK-201ENST00000299421 1802 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
VPS9D1Q9Y2B5 DHRS4-AS1-204ENST00000555045 1848 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
VPS9D1Q9Y2B5 CAP2-206ENST00000489374 1430 ntTSL 2 BASIC14.57□□□□□ -0.08
VPS9D1Q9Y2B5 RP1L1-202ENST00000382483 7973 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
VPS9D1Q9Y2B5 GCFC2-211ENST00000541687 4318 ntTSL 2 BASIC14.57□□□□□ -0.08
VPS9D1Q9Y2B5 ACSF2-202ENST00000427954 2251 ntTSL 2 BASIC14.57□□□□□ -0.08
VPS9D1Q9Y2B5 SEPT12-201ENST00000268231 1469 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
VPS9D1Q9Y2B5 KRT8P4-201ENST00000509735 1454 ntBASIC14.57□□□□□ -0.08
VPS9D1Q9Y2B5 LINC00299-202ENST00000442956 2342 ntTSL 2 BASIC14.57□□□□□ -0.08
VPS9D1Q9Y2B5 KRBOX4-202ENST00000344302 2774 ntAPPRIS ALT2 TSL 2 BASIC14.56□□□□□ -0.08
VPS9D1Q9Y2B5 VILL-202ENST00000383759 2787 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
VPS9D1Q9Y2B5 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
VPS9D1Q9Y2B5 XRCC1-201ENST00000262887 2802 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
VPS9D1Q9Y2B5 AL162231.1-201ENST00000421828 1525 ntAPPRIS P2 TSL 1 (best) BASIC14.56□□□□□ -0.08
VPS9D1Q9Y2B5 NXPH3-202ENST00000513748 1530 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
VPS9D1Q9Y2B5 ZNF750-202ENST00000572562 1513 ntTSL 2 BASIC14.56□□□□□ -0.08
VPS9D1Q9Y2B5 SLC26A11-201ENST00000361193 2885 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
VPS9D1Q9Y2B5 HOXC12-201ENST00000243103 3335 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
VPS9D1Q9Y2B5 SOGA3-201ENST00000465909 3756 ntTSL 5 BASIC14.56□□□□□ -0.08
VPS9D1Q9Y2B5 RUNDC1-201ENST00000361677 3828 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
VPS9D1Q9Y2B5 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
VPS9D1Q9Y2B5 PRPS1-204ENST00000372435 2073 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
VPS9D1Q9Y2B5 KCTD10-208ENST00000540089 3096 ntTSL 2 BASIC14.56□□□□□ -0.08
VPS9D1Q9Y2B5 DUSP27-201ENST00000271385 3597 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
VPS9D1Q9Y2B5 LRP5L-202ENST00000402859 1661 ntAPPRIS P2 TSL 5 BASIC14.56□□□□□ -0.08
VPS9D1Q9Y2B5 SHC1P1-201ENST00000425230 1745 ntBASIC14.56□□□□□ -0.08
VPS9D1Q9Y2B5 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC14.56□□□□□ -0.08
VPS9D1Q9Y2B5 SUGP2-214ENST00000600377 4752 ntAPPRIS ALT2 TSL 2 BASIC14.56□□□□□ -0.08
VPS9D1Q9Y2B5 FGD5-AS1-202ENST00000424349 3792 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
VPS9D1Q9Y2B5 PAPOLA-223ENST00000557320 3264 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
VPS9D1Q9Y2B5 DYDC2-204ENST00000372199 2254 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
VPS9D1Q9Y2B5 KLK11-201ENST00000319720 1198 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
VPS9D1Q9Y2B5 H3F3A-203ENST00000366815 1088 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
VPS9D1Q9Y2B5 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC14.56□□□□□ -0.08
VPS9D1Q9Y2B5 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
VPS9D1Q9Y2B5 LARGE-AS1-202ENST00000424291 1065 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
VPS9D1Q9Y2B5 GSAP-205ENST00000430584 600 ntTSL 5 BASIC14.56□□□□□ -0.08
VPS9D1Q9Y2B5 LINC01221-201ENST00000432488 662 ntTSL 3 BASIC14.56□□□□□ -0.08
VPS9D1Q9Y2B5 AC128709.2-201ENST00000438408 558 ntTSL 4 BASIC14.56□□□□□ -0.08
VPS9D1Q9Y2B5 CICP12-201ENST00000455801 843 ntBASIC14.56□□□□□ -0.08
VPS9D1Q9Y2B5 PDCD10-207ENST00000471885 764 ntTSL 5 BASIC14.56□□□□□ -0.08
VPS9D1Q9Y2B5 TRIM36-IT1-201ENST00000503723 881 ntBASIC14.56□□□□□ -0.08
VPS9D1Q9Y2B5 MTND3P3-201ENST00000505004 126 ntBASIC14.56□□□□□ -0.08
VPS9D1Q9Y2B5 AC104596.1-201ENST00000507826 579 ntTSL 4 BASIC14.56□□□□□ -0.08
VPS9D1Q9Y2B5 ERICH5-202ENST00000545282 596 ntAPPRIS ALT2 TSL 2 BASIC14.56□□□□□ -0.08
VPS9D1Q9Y2B5 AC007376.2-201ENST00000556271 540 ntTSL 3 BASIC14.56□□□□□ -0.08
VPS9D1Q9Y2B5 MIR22HG-212ENST00000577164 931 ntTSL 4 BASIC14.56□□□□□ -0.08
VPS9D1Q9Y2B5 C1QTNF1-AS1-202ENST00000581579 865 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
VPS9D1Q9Y2B5 TJP3-202ENST00000541714 3350 ntAPPRIS P3 TSL 2 BASIC14.56□□□□□ -0.08
VPS9D1Q9Y2B5 RNF182-208ENST00000544682 3495 ntAPPRIS P1 TSL 4 BASIC14.56□□□□□ -0.08
VPS9D1Q9Y2B5 BBS2-201ENST00000245157 2963 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
VPS9D1Q9Y2B5 KIAA0319-201ENST00000378214 6802 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
VPS9D1Q9Y2B5 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
VPS9D1Q9Y2B5 LYRM1-203ENST00000412082 1399 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
VPS9D1Q9Y2B5 EHD4-201ENST00000220325 6416 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 69.5 ms