Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 PLXDC1-201ENST00000315392 6252 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
USP28Q96RU2 PPM1F-201ENST00000263212 5143 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
USP28Q96RU2 CHEK2-201ENST00000328354 1867 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
USP28Q96RU2 KCNV1-201ENST00000297404 2927 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
USP28Q96RU2 PDE2A-203ENST00000418754 2855 ntTSL 2 BASIC16.55■□□□□ 0.24
USP28Q96RU2 GPR68-204ENST00000535815 2859 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
USP28Q96RU2 MAP3K1-201ENST00000399503 7011 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
USP28Q96RU2 AL662899.1-201ENST00000461287 2332 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
USP28Q96RU2 CBY1-201ENST00000216029 1133 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
USP28Q96RU2 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
USP28Q96RU2 CIDEC-201ENST00000336832 1277 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
USP28Q96RU2 LBX2-201ENST00000341396 886 ntTSL 3 BASIC16.55■□□□□ 0.24
USP28Q96RU2 EDF1-203ENST00000371649 790 ntTSL 2 BASIC16.55■□□□□ 0.24
USP28Q96RU2 VCX3B-201ENST00000381029 756 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
USP28Q96RU2 CIDEC-203ENST00000423850 1036 ntTSL 2 BASIC16.55■□□□□ 0.24
USP28Q96RU2 RNF144A-AS1-203ENST00000426122 579 ntTSL 4 BASIC16.55■□□□□ 0.24
USP28Q96RU2 CIDEC-206ENST00000455015 1123 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
USP28Q96RU2 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC16.55■□□□□ 0.24
USP28Q96RU2 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC16.55■□□□□ 0.24
USP28Q96RU2 AP000812.2-201ENST00000538934 718 ntBASIC16.55■□□□□ 0.24
USP28Q96RU2 AF111169.4-201ENST00000556368 749 ntTSL 2 BASIC16.55■□□□□ 0.24
USP28Q96RU2 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC16.55■□□□□ 0.24
USP28Q96RU2 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC16.55■□□□□ 0.24
USP28Q96RU2 AL160412.1-202ENST00000616819 663 ntTSL 4 BASIC16.55■□□□□ 0.24
USP28Q96RU2 RHOXF1P1-202ENST00000635473 501 ntBASIC16.55■□□□□ 0.24
USP28Q96RU2 AC004943.2-201ENST00000563328 4842 ntTSL 3 BASIC16.55■□□□□ 0.24
USP28Q96RU2 FXYD6-207ENST00000527717 1799 ntAPPRIS P2 TSL 2 BASIC16.55■□□□□ 0.24
USP28Q96RU2 OPA1-201ENST00000361150 6330 ntTSL 5 BASIC16.55■□□□□ 0.24
USP28Q96RU2 RNASEH2C-201ENST00000308418 2794 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
USP28Q96RU2 FAM109A-201ENST00000361483 3256 ntAPPRIS ALT2 TSL 3 BASIC16.55■□□□□ 0.24
USP28Q96RU2 FGFR3-201ENST00000260795 4132 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
USP28Q96RU2 ABI2-215ENST00000430418 1676 ntTSL 5 BASIC16.55■□□□□ 0.24
USP28Q96RU2 IKBKG-208ENST00000611176 1654 ntTSL 2 BASIC16.55■□□□□ 0.24
USP28Q96RU2 ALOX15B-201ENST00000380173 2605 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
USP28Q96RU2 WSCD2-206ENST00000547525 4481 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
USP28Q96RU2 CLCNKA-202ENST00000375692 2581 ntAPPRIS ALT1 TSL 1 (best) BASIC16.55■□□□□ 0.24
USP28Q96RU2 CNTN1-203ENST00000547702 3033 ntTSL 2 BASIC16.55■□□□□ 0.24
USP28Q96RU2 FERMT1-201ENST00000217289 5151 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
USP28Q96RU2 ATXN7L1-207ENST00000477775 2426 ntTSL 2 BASIC16.55■□□□□ 0.24
USP28Q96RU2 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC16.55■□□□□ 0.24
USP28Q96RU2 RGMA-204ENST00000543599 3174 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
USP28Q96RU2 ZNF75A-205ENST00000574298 2347 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
USP28Q96RU2 CRACR2A-203ENST00000440314 2697 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
USP28Q96RU2 GNAI2-201ENST00000266027 2169 ntTSL 2 BASIC16.54■□□□□ 0.24
USP28Q96RU2 ALAS2-202ENST00000335854 1795 ntTSL 2 BASIC16.54■□□□□ 0.24
USP28Q96RU2 COL6A1-207ENST00000612273 3251 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
USP28Q96RU2 ADAM15-202ENST00000355956 2877 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
USP28Q96RU2 CCNC-210ENST00000520429 2473 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
USP28Q96RU2 PIK3R1-211ENST00000521381 7011 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
USP28Q96RU2 COLCA2-202ENST00000526216 1332 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
USP28Q96RU2 PSMD8-209ENST00000602911 1330 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
USP28Q96RU2 KLK3-216ENST00000617027 1341 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
USP28Q96RU2 C14orf39-201ENST00000321731 2813 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
USP28Q96RU2 ATP11B-201ENST00000323116 7325 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
USP28Q96RU2 AC244394.1-201ENST00000435000 1665 ntBASIC16.54■□□□□ 0.24
USP28Q96RU2 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
USP28Q96RU2 FZR1-201ENST00000313639 1215 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
USP28Q96RU2 DUSP23-202ENST00000368108 694 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
USP28Q96RU2 RBM38-204ENST00000371219 760 ntTSL 2 BASIC16.54■□□□□ 0.24
USP28Q96RU2 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC16.54■□□□□ 0.24
USP28Q96RU2 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC16.54■□□□□ 0.24
USP28Q96RU2 AC112492.5-201ENST00000421897 457 ntBASIC16.54■□□□□ 0.24
USP28Q96RU2 NME2P1-201ENST00000426182 414 ntBASIC16.54■□□□□ 0.24
USP28Q96RU2 C1QTNF6-203ENST00000434784 975 ntTSL 3 BASIC16.54■□□□□ 0.24
USP28Q96RU2 AC124944.1-201ENST00000448113 625 ntTSL 2 BASIC16.54■□□□□ 0.24
USP28Q96RU2 AC100850.1-201ENST00000506768 649 ntBASIC16.54■□□□□ 0.24
USP28Q96RU2 MSRB3-206ENST00000535664 964 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
USP28Q96RU2 APRT-204ENST00000563655 709 ntTSL 5 BASIC16.54■□□□□ 0.24
USP28Q96RU2 DUX4L46-201ENST00000566845 751 ntBASIC16.54■□□□□ 0.24
USP28Q96RU2 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC16.54■□□□□ 0.24
USP28Q96RU2 YIF1B-215ENST00000592246 936 ntTSL 3 BASIC16.54■□□□□ 0.24
USP28Q96RU2 WNT11-204ENST00000621122 789 ntTSL 5 BASIC16.54■□□□□ 0.24
USP28Q96RU2 B4GALT3-201ENST00000319769 1911 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
USP28Q96RU2 KLHL13-204ENST00000371882 3256 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
USP28Q96RU2 LINC00863-201ENST00000439559 3287 ntTSL 5 BASIC16.54■□□□□ 0.24
USP28Q96RU2 HAP1-204ENST00000393939 5683 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
USP28Q96RU2 PDIA3P1-201ENST00000471856 1510 ntBASIC16.54■□□□□ 0.24
USP28Q96RU2 C9orf3-202ENST00000297979 2820 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
USP28Q96RU2 AMOTL2-201ENST00000249883 4488 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
USP28Q96RU2 OPRL1-203ENST00000355631 3147 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
USP28Q96RU2 G6PD-201ENST00000369620 1799 ntTSL 5 BASIC16.54■□□□□ 0.24
USP28Q96RU2 MRPS7-201ENST00000245539 1406 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
USP28Q96RU2 OR2A25-202ENST00000641441 1733 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
USP28Q96RU2 CD6-201ENST00000313421 3252 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
USP28Q96RU2 PP14571-202ENST00000404891 2017 ntTSL 2 BASIC16.53■□□□□ 0.24
USP28Q96RU2 GGT1-203ENST00000400382 2628 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
USP28Q96RU2 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
USP28Q96RU2 SSTR3-201ENST00000610913 4100 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
USP28Q96RU2 RPRD1A-202ENST00000399022 4438 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
USP28Q96RU2 TBC1D24-207ENST00000627285 4382 ntAPPRIS P3 TSL 5 BASIC16.53■□□□□ 0.24
USP28Q96RU2 AC109466.1-209ENST00000486913 1618 ntTSL 2 BASIC16.53■□□□□ 0.24
USP28Q96RU2 TCOF1-202ENST00000377797 5095 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
USP28Q96RU2 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC16.53■□□□□ 0.24
USP28Q96RU2 AC020658.7-201ENST00000624274 2442 ntBASIC16.53■□□□□ 0.24
USP28Q96RU2 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
USP28Q96RU2 BATF-201ENST00000286639 980 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
USP28Q96RU2 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
USP28Q96RU2 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC16.53■□□□□ 0.24
USP28Q96RU2 AC007405.2-202ENST00000418106 540 ntTSL 4 BASIC16.53■□□□□ 0.24
USP28Q96RU2 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC16.53■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 58.3 ms