Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 GGA3-214ENST00000582717 2255 ntTSL 2 BASIC14.17□□□□□ -0.14
CCDC28BQ9BUN5 SP6-202ENST00000536300 3848 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
CCDC28BQ9BUN5 MAGI3-202ENST00000369611 3596 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CCDC28BQ9BUN5 RNH1-224ENST00000534797 2973 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CCDC28BQ9BUN5 TJAP1-208ENST00000438588 2716 ntTSL 5 BASIC14.17□□□□□ -0.14
CCDC28BQ9BUN5 PLD2-201ENST00000263088 3503 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CCDC28BQ9BUN5 NSD2-203ENST00000382888 2666 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CCDC28BQ9BUN5 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CCDC28BQ9BUN5 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CCDC28BQ9BUN5 USP17L6P-201ENST00000382470 1197 ntBASIC14.17□□□□□ -0.14
CCDC28BQ9BUN5 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC14.17□□□□□ -0.14
CCDC28BQ9BUN5 AL442647.2-201ENST00000429864 857 ntBASIC14.17□□□□□ -0.14
CCDC28BQ9BUN5 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC14.17□□□□□ -0.14
CCDC28BQ9BUN5 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC14.17□□□□□ -0.14
CCDC28BQ9BUN5 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC14.17□□□□□ -0.14
CCDC28BQ9BUN5 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC14.17□□□□□ -0.14
CCDC28BQ9BUN5 AC104794.3-201ENST00000566840 1248 ntBASIC14.17□□□□□ -0.14
CCDC28BQ9BUN5 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC14.17□□□□□ -0.14
CCDC28BQ9BUN5 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC14.17□□□□□ -0.14
CCDC28BQ9BUN5 AC004790.1-201ENST00000612686 536 ntBASIC14.17□□□□□ -0.14
CCDC28BQ9BUN5 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC14.17□□□□□ -0.14
CCDC28BQ9BUN5 FP236240.1-204ENST00000624932 712 ntTSL 2 BASIC14.17□□□□□ -0.14
CCDC28BQ9BUN5 AC134684.3-201ENST00000641758 218 ntBASIC14.17□□□□□ -0.14
CCDC28BQ9BUN5 ZBTB49-201ENST00000337872 2889 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CCDC28BQ9BUN5 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CCDC28BQ9BUN5 SLC4A7-214ENST00000455077 3775 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
CCDC28BQ9BUN5 TBX6-202ENST00000395224 1803 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CCDC28BQ9BUN5 SLC7A7-201ENST00000285850 2263 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
CCDC28BQ9BUN5 TRDMT1-203ENST00000377799 3527 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CCDC28BQ9BUN5 ADGRG3-201ENST00000333493 2728 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
CCDC28BQ9BUN5 BEGAIN-212ENST00000637716 3259 ntAPPRIS P5 TSL 5 BASIC14.17□□□□□ -0.14
CCDC28BQ9BUN5 B3GNT5-202ENST00000460419 3368 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
CCDC28BQ9BUN5 GOLGA8IP-202ENST00000611635 2100 ntBASIC14.17□□□□□ -0.14
CCDC28BQ9BUN5 AC134407.3-201ENST00000624035 2139 ntBASIC14.17□□□□□ -0.14
CCDC28BQ9BUN5 POPDC2-201ENST00000264231 1679 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
CCDC28BQ9BUN5 LDHAL6B-201ENST00000307144 1693 ntAPPRIS P1 BASIC14.17□□□□□ -0.14
CCDC28BQ9BUN5 EBP-205ENST00000495186 1775 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CCDC28BQ9BUN5 RHOH-218ENST00000613272 1865 ntAPPRIS P1 TSL 3 BASIC14.16□□□□□ -0.14
CCDC28BQ9BUN5 SLC1A1-201ENST00000262352 3722 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CCDC28BQ9BUN5 LINC01341-202ENST00000421003 2600 ntTSL 2 BASIC14.16□□□□□ -0.14
CCDC28BQ9BUN5 FAM30A-205ENST00000630242 9612 ntTSL 2 BASIC14.16□□□□□ -0.14
CCDC28BQ9BUN5 GSDMA-201ENST00000301659 2164 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CCDC28BQ9BUN5 FASN-201ENST00000306749 8565 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
CCDC28BQ9BUN5 MARK2P9-201ENST00000430958 1727 ntBASIC14.16□□□□□ -0.14
CCDC28BQ9BUN5 DAZL-201ENST00000250863 3104 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
CCDC28BQ9BUN5 TFR2-205ENST00000462107 3131 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
CCDC28BQ9BUN5 MSH2-201ENST00000233146 3307 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CCDC28BQ9BUN5 TSN-212ENST00000536142 3328 ntTSL 2 BASIC14.16□□□□□ -0.14
CCDC28BQ9BUN5 GTF2IRD1-205ENST00000476977 5868 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
CCDC28BQ9BUN5 RNF26-201ENST00000311413 2787 ntAPPRIS P1 BASIC14.16□□□□□ -0.14
CCDC28BQ9BUN5 AL022313.4-201ENST00000562756 2046 ntBASIC14.16□□□□□ -0.14
CCDC28BQ9BUN5 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CCDC28BQ9BUN5 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CCDC28BQ9BUN5 OR10H1-201ENST00000334920 1124 ntAPPRIS P1 BASIC14.16□□□□□ -0.14
CCDC28BQ9BUN5 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC14.16□□□□□ -0.14
CCDC28BQ9BUN5 IL1RAPL2-202ENST00000372582 2985 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CCDC28BQ9BUN5 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC14.16□□□□□ -0.14
CCDC28BQ9BUN5 AL391647.1-201ENST00000395664 511 ntBASIC14.16□□□□□ -0.14
CCDC28BQ9BUN5 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
CCDC28BQ9BUN5 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC14.16□□□□□ -0.14
CCDC28BQ9BUN5 ARSEP1-201ENST00000420443 635 ntBASIC14.16□□□□□ -0.14
CCDC28BQ9BUN5 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC14.16□□□□□ -0.14
CCDC28BQ9BUN5 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
CCDC28BQ9BUN5 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC14.16□□□□□ -0.14
CCDC28BQ9BUN5 AL161932.2-201ENST00000435436 679 ntBASIC14.16□□□□□ -0.14
CCDC28BQ9BUN5 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CCDC28BQ9BUN5 MESTP3-201ENST00000503460 968 ntBASIC14.16□□□□□ -0.14
CCDC28BQ9BUN5 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CCDC28BQ9BUN5 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC14.16□□□□□ -0.14
CCDC28BQ9BUN5 DOC2GP-202ENST00000514950 1163 ntBASIC14.16□□□□□ -0.14
CCDC28BQ9BUN5 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CCDC28BQ9BUN5 AC027237.1-201ENST00000560942 655 ntBASIC14.16□□□□□ -0.14
CCDC28BQ9BUN5 LSM12-202ENST00000585388 942 ntTSL 3 BASIC14.16□□□□□ -0.14
CCDC28BQ9BUN5 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
CCDC28BQ9BUN5 AC104506.1-201ENST00000609247 429 ntBASIC14.16□□□□□ -0.14
CCDC28BQ9BUN5 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC14.16□□□□□ -0.14
CCDC28BQ9BUN5 GNAI2-203ENST00000422163 2407 ntTSL 2 BASIC14.16□□□□□ -0.14
CCDC28BQ9BUN5 AFDN-211ENST00000447894 5475 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
CCDC28BQ9BUN5 IL1RL2-201ENST00000264257 2615 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CCDC28BQ9BUN5 AC022144.1-201ENST00000602255 1580 ntBASIC14.16□□□□□ -0.14
CCDC28BQ9BUN5 TUBB8-206ENST00000568584 1790 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CCDC28BQ9BUN5 RAB42-201ENST00000373826 1950 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
CCDC28BQ9BUN5 PRC1-204ENST00000442656 2060 ntTSL 2 BASIC14.16□□□□□ -0.14
CCDC28BQ9BUN5 AP000437.1-201ENST00000624057 2085 ntBASIC14.16□□□□□ -0.14
CCDC28BQ9BUN5 FKBP9-214ENST00000538336 3621 ntTSL 2 BASIC14.16□□□□□ -0.14
CCDC28BQ9BUN5 DLGAP4-202ENST00000340491 2392 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
CCDC28BQ9BUN5 TMPRSS13-202ENST00000445164 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
CCDC28BQ9BUN5 RNF41-202ENST00000394013 2452 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
CCDC28BQ9BUN5 MTSS1-201ENST00000325064 2777 ntTSL 2 BASIC14.16□□□□□ -0.14
CCDC28BQ9BUN5 ATG14-201ENST00000247178 4742 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
CCDC28BQ9BUN5 TNS2-202ENST00000314276 4944 ntAPPRIS P4 TSL 1 (best) BASIC14.16□□□□□ -0.14
CCDC28BQ9BUN5 NYNRIN-201ENST00000382554 7857 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
CCDC28BQ9BUN5 ADAMTS10-201ENST00000270328 4194 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
CCDC28BQ9BUN5 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC28BQ9BUN5 BCL2L12-211ENST00000614495 1402 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC28BQ9BUN5 PDYN-AS1-201ENST00000446562 1802 ntTSL 2 BASIC14.15□□□□□ -0.14
CCDC28BQ9BUN5 RERE-204ENST00000400908 5790 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC28BQ9BUN5 NCF2-201ENST00000367535 2226 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
CCDC28BQ9BUN5 BICDL2-204ENST00000573514 3519 ntTSL 2 BASIC14.15□□□□□ -0.14
CCDC28BQ9BUN5 PLIN4-202ENST00000633942 6484 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 53.8 ms